Wall clock time and date at job start Wed Apr 1 2020 03:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00208 * 2 1 4 4 H 1.48505 * 109.47071 * 269.99814 * 3 2 1 5 5 H 1.48497 * 109.47157 * 29.99478 * 3 2 1 6 6 H 1.48494 * 109.47207 * 150.00101 * 3 2 1 7 7 C 1.38814 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99997 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64571 * 0.02987 * 9 7 2 11 11 C 1.54917 * 104.83074 * 204.09198 * 10 9 7 12 12 H 1.08998 * 111.00524 * 81.06438 * 11 10 9 13 13 O 1.42898 * 111.00398 * 204.87574 * 11 10 9 14 14 C 1.55158 * 101.57978 * 322.98980 * 11 10 9 15 15 H 1.09003 * 110.71814 * 277.13679 * 14 11 10 16 16 N 1.46496 * 110.71649 * 154.04271 * 14 11 10 17 17 C 1.34781 * 119.99704 * 154.99666 * 16 14 11 18 18 O 1.21537 * 119.99847 * 0.02562 * 17 16 14 19 19 C 1.47991 * 120.00029 * 179.97438 * 17 16 14 20 20 C 1.40421 * 119.71418 * 0.02562 * 19 17 16 21 21 C 1.36075 * 120.77706 * 180.02562 * 20 19 17 22 22 C 1.40079 * 119.86449 * 359.97438 * 21 20 19 23 23 C 1.41588 * 121.89087 * 179.97438 * 22 21 20 24 24 O 1.35273 * 120.87401 * 0.02562 * 23 22 21 25 25 N 1.32327 * 118.24879 * 180.02562 * 23 22 21 26 26 C 1.32427 * 121.53444 * 0.02562 * 25 23 22 27 27 N 1.31113 * 122.93107 * 359.96709 * 26 25 23 28 28 C 1.34119 * 120.44516 * 0.05146 * 27 26 25 29 29 C 1.38553 * 119.71885 * 179.73237 * 19 17 16 30 30 C 1.47020 * 125.65236 * 179.97438 * 9 7 2 31 31 H 0.96998 * 119.99446 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.36873 * 85.25284 * 10 9 7 33 33 H 1.09005 * 110.36491 * 322.92691 * 10 9 7 34 34 H 0.96701 * 113.99799 * 298.54877 * 13 11 10 35 35 H 0.97001 * 120.00701 * 335.00045 * 16 14 11 36 36 H 1.07999 * 119.61227 * 359.97438 * 20 19 17 37 37 H 1.08004 * 120.06748 * 179.97438 * 21 20 19 38 38 H 0.96700 * 113.99844 * 90.00020 * 24 23 22 39 39 H 1.08003 * 118.53254 * 179.97438 * 26 25 23 40 40 H 1.08004 * 120.30916 * 359.97412 * 29 19 17 41 41 H 1.09000 * 109.88493 * 59.55525 * 30 9 7 42 42 H 1.09005 * 110.00581 * 298.46835 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5331 -0.0006 11 6 -0.4016 -3.9326 0.6107 12 1 -0.3519 -3.8989 1.6990 13 8 -1.6571 -4.4570 0.1740 14 6 0.7784 -4.7525 0.0253 15 1 0.5459 -5.0976 -0.9822 16 7 1.1057 -5.8840 0.8962 17 6 1.7076 -6.9761 0.3846 18 8 1.9792 -7.0218 -0.7991 19 6 2.0388 -8.1190 1.2645 20 6 1.7228 -8.0595 2.6314 21 6 2.0180 -9.0977 3.4601 22 6 2.6439 -10.2419 2.9491 23 6 2.9709 -11.3464 3.7724 24 8 2.6865 -11.3348 5.0948 25 7 3.5620 -12.3904 3.2141 26 6 3.8469 -12.4156 1.9210 27 7 3.5681 -11.4235 1.1104 28 6 2.9690 -10.3161 1.5724 29 6 2.6525 -9.2410 0.7314 30 6 1.9318 -3.7275 -0.0016 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5272 -2.4863 -1.0190 33 1 -0.5992 -1.7590 0.6154 34 1 -2.4190 -3.9214 0.4344 35 1 0.8893 -5.8474 1.8411 36 1 1.2405 -7.1792 3.0298 37 1 1.7701 -9.0396 4.5097 38 1 1.8137 -11.6896 5.3125 39 1 4.3303 -13.2924 1.5162 40 1 2.8891 -9.2844 -0.3216 41 1 2.5585 -3.8515 0.8815 42 1 2.5296 -3.8656 -0.9026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078184865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:44 Heat of formation + Delta-G solvation = -12.982780 kcal Electronic energy + Delta-G solvation = -28882.825255 eV Core-core repulsion = 24636.779451 eV Total energy + Delta-G solvation = -4246.045804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.92432 -40.09919 -38.45439 -38.09197 -37.36747 -35.15441 -34.32798 -33.66002 -32.20920 -31.53615 -30.60232 -28.54755 -27.23011 -25.68928 -24.99578 -24.36236 -22.79612 -21.55078 -20.73118 -20.25732 -19.71329 -18.96449 -18.31679 -17.32845 -17.13687 -16.81389 -16.66792 -15.98661 -15.58733 -14.98962 -14.95986 -14.77974 -14.45122 -14.43129 -14.17246 -13.94916 -13.49165 -13.37242 -13.01020 -12.93174 -12.64781 -12.37685 -12.19259 -11.97256 -11.54179 -11.36827 -11.30616 -11.09328 -11.06460 -10.87895 -10.25203 -10.13327 -9.99949 -9.79460 -9.77224 -9.73385 -9.40458 -8.94383 -8.82964 -8.77804 -6.99037 -5.78381 -3.20904 -0.42298 0.02009 1.23050 2.09206 2.71489 2.97386 3.08214 3.34423 3.39821 3.41173 3.59007 3.66401 3.79594 4.05213 4.31916 4.33090 4.39691 4.52751 4.59743 4.75250 4.91956 5.14847 5.21704 5.35399 5.41187 5.54020 5.55461 5.60307 5.69876 5.77929 5.79555 5.98398 6.04252 6.08509 6.32483 6.46932 6.58616 6.75852 6.80008 7.23783 7.43170 7.51033 7.59020 7.65086 8.02250 8.14121 8.20173 9.07737 9.68116 10.29782 11.26064 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.002142 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.685505 B =13068.788574 C =13175.768432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 0.918 3.082 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.128 3.872 11 C 0.067 3.933 12 H 0.062 0.938 13 O -0.566 6.566 14 C 0.140 3.860 15 H 0.105 0.895 16 N -0.704 5.704 17 C 0.554 3.446 18 O -0.525 6.525 19 C -0.083 4.083 20 C -0.094 4.094 21 C -0.073 4.073 22 C -0.163 4.163 23 C 0.407 3.593 24 O -0.469 6.469 25 N -0.545 5.545 26 C 0.320 3.680 27 N -0.502 5.502 28 C 0.163 3.837 29 C -0.037 4.037 30 C 0.129 3.871 31 H 0.254 0.746 32 H 0.026 0.974 33 H 0.114 0.886 34 H 0.379 0.621 35 H 0.398 0.602 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.413 0.587 39 H 0.204 0.796 40 H 0.160 0.840 41 H 0.031 0.969 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.184 -21.906 10.418 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.749 3.251 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.003 3.997 11 C 0.006 3.994 12 H 0.080 0.920 13 O -0.371 6.371 14 C 0.036 3.964 15 H 0.123 0.877 16 N -0.355 5.355 17 C 0.339 3.661 18 O -0.402 6.402 19 C -0.089 4.089 20 C -0.112 4.112 21 C -0.093 4.093 22 C -0.168 4.168 23 C 0.206 3.794 24 O -0.277 6.277 25 N -0.270 5.270 26 C 0.031 3.969 27 N -0.216 5.216 28 C 0.037 3.963 29 C -0.057 4.057 30 C 0.002 3.998 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.132 0.868 34 H 0.226 0.774 35 H 0.234 0.766 36 H 0.157 0.843 37 H 0.164 0.836 38 H 0.274 0.726 39 H 0.220 0.780 40 H 0.177 0.823 41 H 0.049 0.951 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.324 -22.649 8.892 24.368 hybrid contribution -0.746 1.752 1.129 2.214 sum 0.578 -20.897 10.021 23.183 Atomic orbital electron populations 1.69723 1.04957 1.25052 1.57579 1.24805 0.95796 0.97871 1.02102 0.86012 0.78507 0.82918 0.77707 1.21472 1.21577 1.20605 1.19106 0.90639 0.82068 1.43311 0.90150 1.44280 1.01448 0.99748 1.87253 1.22590 0.85659 0.91875 0.99622 1.23646 0.82630 0.96086 0.96999 0.92002 1.86405 1.15979 1.53394 1.81336 1.22103 0.94347 0.84810 0.95179 0.87697 1.45887 1.60377 1.16540 1.12673 1.18114 0.78282 0.82242 0.87447 1.90814 1.52622 1.81038 1.15721 1.20196 0.99597 0.95069 0.94060 1.21123 0.98655 0.99280 0.92165 1.20772 0.96524 0.91373 1.00662 1.19724 1.04162 0.97967 0.94996 1.19647 0.88415 0.87488 0.83899 1.84631 1.41231 1.84738 1.17093 1.67906 1.15677 1.28613 1.14785 1.24771 0.92296 0.96275 0.83522 1.68772 1.13182 1.00699 1.38994 1.18775 0.94420 0.93194 0.89925 1.21206 0.94100 0.89355 1.00996 1.21624 0.93608 0.85335 0.99212 0.93542 0.95557 0.86846 0.77409 0.76613 0.84275 0.83623 0.72580 0.77973 0.82289 0.95094 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.75 10.09 55.49 0.56 -25.19 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -14.84 3.39 -170.07 -0.58 -15.41 16 10 C 0.13 2.93 5.62 -2.53 -0.01 2.92 16 11 C 0.07 1.18 4.06 -24.58 -0.10 1.08 16 12 H 0.06 1.00 8.01 -51.93 -0.42 0.58 16 13 O -0.57 -9.17 13.47 -35.23 -0.47 -9.64 16 14 C 0.14 2.52 3.05 -66.10 -0.20 2.32 16 15 H 0.11 2.11 7.55 -51.93 -0.39 1.72 16 16 N -0.70 -9.97 5.06 -52.93 -0.27 -10.24 16 17 C 0.55 8.21 7.77 -12.26 -0.10 8.12 16 18 O -0.53 -9.78 15.95 5.33 0.09 -9.69 16 19 C -0.08 -0.96 5.87 -104.96 -0.62 -1.58 16 20 C -0.09 -0.80 9.45 -39.54 -0.37 -1.17 16 21 C -0.07 -0.55 9.58 -39.67 -0.38 -0.93 16 22 C -0.16 -1.53 5.76 -106.63 -0.61 -2.15 16 23 C 0.41 3.56 7.89 -16.06 -0.13 3.43 16 24 O -0.47 -2.85 12.91 -17.51 -0.23 -3.08 16 25 N -0.54 -5.22 10.42 -14.23 -0.15 -5.37 16 26 C 0.32 2.87 12.22 -92.19 -1.13 1.75 16 27 N -0.50 -5.55 10.44 -12.65 -0.13 -5.68 16 28 C 0.16 1.84 6.61 -84.86 -0.56 1.28 16 29 C -0.04 -0.44 9.58 -38.76 -0.37 -0.81 16 30 C 0.13 2.70 7.00 -3.07 -0.02 2.68 16 31 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.11 2.84 5.88 -51.93 -0.31 2.53 16 34 H 0.38 4.65 9.11 45.56 0.42 5.07 16 35 H 0.40 4.37 6.55 -40.82 -0.27 4.11 16 36 H 0.14 0.87 6.34 -52.49 -0.33 0.53 16 37 H 0.15 0.69 7.70 -52.48 -0.40 0.29 16 38 H 0.41 0.30 9.06 45.56 0.41 0.71 16 39 H 0.20 1.07 8.06 -52.48 -0.42 0.64 16 40 H 0.16 1.99 7.61 -52.48 -0.40 1.60 16 41 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -35.49 359.15 -8.56 -44.05 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -2.92 Total: 8.05 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: -4.85 Total: 10.36 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.57 Total: -61.90 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.62 Total: -22.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.49 -8.56 -44.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078184865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.069 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds