Wall clock time and date at job start Wed Apr 1 2020 03:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00335 * 2 1 4 4 H 1.48503 * 109.47047 * 240.00073 * 3 2 1 5 5 H 1.48499 * 109.47223 * 119.99855 * 3 2 1 6 6 H 1.48503 * 109.47024 * 359.97438 * 3 2 1 7 7 C 1.38816 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00318 * 207.26377 * 7 2 1 9 9 N 1.36933 * 119.99961 * 27.26821 * 7 2 1 10 10 C 1.47029 * 125.64936 * 193.62770 * 9 7 2 11 11 C 1.54320 * 107.27322 * 181.02206 * 10 9 7 12 12 H 1.09001 * 110.72130 * 140.73309 * 11 10 9 13 13 N 1.46499 * 110.72144 * 263.83726 * 11 10 9 14 14 C 1.34779 * 119.99683 * 273.53918 * 13 11 10 15 15 O 1.21586 * 119.99811 * 0.02562 * 14 13 11 16 16 C 1.47605 * 119.99699 * 179.97438 * 14 13 11 17 17 N 1.32559 * 120.90551 * 0.02562 * 16 14 13 18 18 N 1.28012 * 123.11295 * 179.97438 * 17 16 14 19 19 C 1.32280 * 124.11971 * 0.02562 * 18 17 16 20 20 O 1.35276 * 120.22995 * 179.97438 * 19 18 17 21 21 C 1.41109 * 119.54274 * 359.97438 * 19 18 17 22 22 C 1.39965 * 122.87855 * 180.02562 * 21 19 18 23 23 C 1.36399 * 119.35650 * 179.21522 * 22 21 19 24 24 C 1.39267 * 121.07797 * 0.75610 * 23 22 21 25 25 C 1.36482 * 121.01908 * 359.48156 * 24 23 22 26 26 C 1.39629 * 119.34420 * 0.02562 * 25 24 23 27 27 C 1.55163 * 102.94213 * 22.19869 * 11 10 9 28 28 H 1.08998 * 111.00445 * 82.56657 * 27 11 10 29 29 O 1.42894 * 111.00402 * 206.38691 * 27 11 10 30 30 C 1.47425 * 125.64884 * 13.32323 * 9 7 2 31 31 H 0.97000 * 119.99718 * 185.85160 * 1 2 3 32 32 H 1.08996 * 109.88404 * 300.44326 * 10 9 7 33 33 H 1.09003 * 109.87364 * 61.45371 * 10 9 7 34 34 H 0.96996 * 120.00220 * 93.54487 * 13 11 10 35 35 H 0.96693 * 114.00740 * 89.99158 * 20 19 18 36 36 H 1.07996 * 120.32319 * 359.95017 * 22 21 19 37 37 H 1.07996 * 119.45405 * 180.22524 * 23 22 21 38 38 H 1.07994 * 119.48891 * 179.51308 * 24 23 22 39 39 H 1.07996 * 120.33073 * 180.02562 * 25 24 23 40 40 H 0.96701 * 114.00090 * 179.97438 * 29 27 11 41 41 H 1.08995 * 110.36729 * 274.74866 * 30 9 7 42 42 H 1.08999 * 110.36759 * 37.07366 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 3.1040 1.6963 1.2125 6 1 1.2853 2.7464 -0.0006 7 6 2.0102 -1.2022 0.0005 8 1 3.0002 -1.2541 0.4290 9 7 1.4396 -2.3224 -0.5423 10 6 1.9205 -3.7005 -0.3655 11 6 0.9844 -4.6202 -1.1775 12 1 1.5514 -5.4116 -1.6678 13 7 -0.0578 -5.1877 -0.3184 14 6 0.1794 -6.3227 0.3686 15 8 1.2585 -6.8753 0.2758 16 6 -0.8704 -6.8942 1.2346 17 7 -2.0530 -6.3064 1.3494 18 7 -2.9932 -6.7650 2.0872 19 6 -2.8963 -7.8662 2.8136 20 8 -3.9412 -8.2795 3.5669 21 6 -1.6954 -8.6070 2.7974 22 6 -1.5169 -9.7812 3.5379 23 6 -0.3305 -10.4494 3.4563 24 6 0.7093 -9.9737 2.6614 25 6 0.5693 -8.8293 1.9309 26 6 -0.6362 -8.1267 1.9842 27 6 0.3679 -3.6531 -2.2226 28 1 1.0377 -3.5168 -3.0716 29 8 -0.9139 -4.1144 -2.6538 30 6 0.2377 -2.3470 -1.3956 31 1 -0.4850 -0.8357 0.0856 32 1 2.9409 -3.7878 -0.7384 33 1 1.8870 -3.9722 0.6896 34 1 -0.9185 -4.7467 -0.2441 35 1 -4.5476 -8.8749 3.1056 36 1 -2.3149 -10.1611 4.1585 37 1 -0.1924 -11.3576 4.0242 38 1 1.6406 -10.5190 2.6219 39 1 1.3828 -8.4707 1.3178 40 1 -1.3386 -3.5419 -3.3072 41 1 -0.6628 -2.3719 -0.7820 42 1 0.2237 -1.4801 -2.0563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083982003.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:54 Heat of formation + Delta-G solvation = -5.089285 kcal Electronic energy + Delta-G solvation = -29833.381567 eV Core-core repulsion = 25587.678051 eV Total energy + Delta-G solvation = -4245.703516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67754 -39.81736 -38.49866 -38.17768 -37.71142 -35.31742 -34.09842 -32.69398 -31.92899 -31.83032 -30.53837 -28.39408 -27.46229 -25.72380 -24.57009 -24.26743 -23.12402 -21.54596 -20.50761 -20.04503 -19.58962 -19.00520 -18.24756 -17.67518 -17.30507 -17.00116 -16.33021 -15.82525 -15.36238 -15.10171 -15.01303 -14.72253 -14.57317 -14.10974 -13.95265 -13.67805 -13.53502 -12.98019 -12.94131 -12.72195 -12.58652 -12.52741 -12.47045 -11.94210 -11.88163 -11.69393 -11.30008 -10.81243 -10.58876 -10.55063 -10.43907 -10.03443 -9.88612 -9.79782 -9.71786 -9.67666 -9.40028 -8.93900 -8.69407 -8.46274 -7.02427 -6.12431 -3.16853 -0.40436 0.27019 1.21316 2.25628 2.89050 2.96607 3.00324 3.49819 3.52785 3.61498 3.71179 3.73943 4.07861 4.18005 4.29504 4.39260 4.56635 4.59333 4.73206 4.84178 5.01755 5.06966 5.23346 5.25003 5.28639 5.33384 5.52534 5.56610 5.59509 5.75294 5.89665 5.95776 5.97649 6.01134 6.25027 6.40268 6.53066 6.67889 6.83607 6.88232 6.89925 7.58152 7.70401 7.86054 8.18580 8.43696 8.45182 8.96678 9.77086 10.27489 11.20624 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.002829 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.800182 B = 9894.800443 C =10158.952065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.025 4.025 3 Si 1.066 2.934 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.338 4.338 8 H 0.069 0.931 9 N -0.599 5.599 10 C 0.127 3.873 11 C 0.142 3.858 12 H 0.099 0.901 13 N -0.670 5.670 14 C 0.581 3.419 15 O -0.535 6.535 16 C 0.064 3.936 17 N -0.194 5.194 18 N -0.284 5.284 19 C 0.320 3.680 20 O -0.467 6.467 21 C -0.105 4.105 22 C -0.087 4.087 23 C -0.101 4.101 24 C -0.096 4.096 25 C -0.088 4.088 26 C -0.033 4.033 27 C 0.074 3.926 28 H 0.079 0.921 29 O -0.561 6.561 30 C 0.117 3.883 31 H 0.269 0.731 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.418 0.582 35 H 0.409 0.591 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.175 0.825 40 H 0.381 0.619 41 H 0.037 0.963 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.016 -22.813 1.940 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.227 4.227 3 Si 0.895 3.105 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.466 4.466 8 H 0.087 0.913 9 N -0.328 5.328 10 C 0.000 4.000 11 C 0.037 3.963 12 H 0.117 0.883 13 N -0.320 5.320 14 C 0.363 3.637 15 O -0.412 6.412 16 C -0.096 4.096 17 N -0.032 5.032 18 N -0.127 5.127 19 C 0.123 3.877 20 O -0.273 6.273 21 C -0.113 4.113 22 C -0.107 4.107 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.107 4.107 26 C -0.040 4.040 27 C 0.014 3.986 28 H 0.097 0.903 29 O -0.366 6.366 30 C -0.010 4.010 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.256 0.744 35 H 0.269 0.731 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.192 0.808 40 H 0.228 0.772 41 H 0.054 0.946 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.066 -20.291 2.247 20.816 hybrid contribution 0.176 -2.430 0.164 2.442 sum -3.890 -22.721 2.411 23.178 Atomic orbital electron populations 1.70801 1.06559 1.30315 1.48239 1.25757 0.96472 1.00984 0.99456 0.83512 0.74778 0.76016 0.76183 1.22087 1.22014 1.21063 1.19774 0.99459 0.87480 1.39848 0.91299 1.44414 1.30827 1.01135 1.56421 1.21771 0.95468 0.85295 0.97452 1.22151 0.88831 0.95263 0.90038 0.88265 1.45600 1.18602 1.24001 1.43757 1.17179 0.85548 0.81195 0.79730 1.90637 1.24265 1.61285 1.65048 1.24261 0.94718 0.93249 0.97377 1.72942 0.97076 1.23276 1.09873 1.72423 1.23458 1.11651 1.05126 1.21084 0.87517 0.90545 0.88543 1.84631 1.37086 1.68157 1.37441 1.18994 0.94538 0.97853 0.99946 1.20875 0.98701 0.93170 0.97904 1.21168 0.93001 0.99891 0.97983 1.21309 0.99289 0.95885 0.95079 1.21888 0.97134 0.93646 0.98021 1.19508 0.94983 0.93975 0.95548 1.23485 0.84823 0.94776 0.95538 0.90316 1.86395 1.33022 1.53054 1.64115 1.22260 0.91281 0.94557 0.92862 0.91887 0.94049 0.94801 0.74441 0.73074 0.84001 0.84792 0.84569 0.80830 0.77187 0.94588 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.59 12.82 55.49 0.71 -26.88 16 2 C -0.03 -0.72 5.09 -17.43 -0.09 -0.81 16 3 Si 1.07 25.30 30.00 -169.99 -5.10 20.20 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.34 -9.54 10.05 -15.06 -0.15 -9.69 16 8 H 0.07 1.94 7.96 -52.48 -0.42 1.52 16 9 N -0.60 -15.01 3.33 -169.93 -0.57 -15.58 16 10 C 0.13 2.70 6.98 -3.06 -0.02 2.68 16 11 C 0.14 2.56 3.14 -66.09 -0.21 2.35 16 12 H 0.10 1.66 7.69 -51.93 -0.40 1.26 16 13 N -0.67 -11.88 4.77 -53.04 -0.25 -12.14 16 14 C 0.58 9.98 7.80 -12.44 -0.10 9.89 16 15 O -0.54 -9.45 13.47 5.29 0.07 -9.38 16 16 C 0.06 1.03 7.05 -80.56 -0.57 0.46 16 17 N -0.19 -3.27 10.71 34.49 0.37 -2.90 16 18 N -0.28 -4.46 11.40 30.80 0.35 -4.10 16 19 C 0.32 3.96 7.91 -16.27 -0.13 3.84 16 20 O -0.47 -4.19 12.94 -17.52 -0.23 -4.41 16 21 C -0.11 -1.23 5.76 -106.76 -0.61 -1.85 16 22 C -0.09 -0.72 9.63 -39.60 -0.38 -1.10 16 23 C -0.10 -0.73 9.95 -39.86 -0.40 -1.12 16 24 C -0.10 -0.82 9.96 -39.83 -0.40 -1.21 16 25 C -0.09 -1.04 9.33 -39.70 -0.37 -1.41 16 26 C -0.03 -0.45 5.90 -104.80 -0.62 -1.07 16 27 C 0.07 1.29 4.23 -24.45 -0.10 1.18 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 29 O -0.56 -8.56 12.63 -35.23 -0.45 -9.00 16 30 C 0.12 2.60 4.93 -2.40 -0.01 2.59 16 31 H 0.27 8.12 5.83 -40.82 -0.24 7.88 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.78 8.05 -51.93 -0.42 0.36 16 34 H 0.42 7.65 7.59 -40.82 -0.31 7.34 16 35 H 0.41 1.34 9.06 45.56 0.41 1.76 16 36 H 0.14 0.80 7.75 -52.49 -0.41 0.39 16 37 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.17 2.25 5.28 -52.49 -0.28 1.97 16 40 H 0.38 4.28 9.12 45.56 0.42 4.70 16 41 H 0.04 0.88 6.84 -51.93 -0.36 0.52 16 42 H 0.06 1.42 7.73 -51.93 -0.40 1.02 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -35.91 356.38 -6.75 -42.66 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -2.88 Total: 11.42 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -4.16 Total: 4.73 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.61 Total: -61.59 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.60 Total: -22.80 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.10 Total: 20.20 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.91 -6.75 -42.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083982003.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.574 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds