Wall clock time and date at job start Wed Apr 1 2020 03:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00117 * 2 1 4 4 H 1.48499 * 109.46834 * 240.00017 * 3 2 1 5 5 H 1.48507 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47170 * 119.99816 * 3 2 1 7 7 C 1.38811 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00238 * 193.78938 * 7 2 1 9 9 N 1.36941 * 120.00008 * 13.78722 * 7 2 1 10 10 C 1.46617 * 119.88806 * 205.09051 * 9 7 2 11 11 C 1.53104 * 108.04958 * 237.34588 * 10 9 7 12 12 C 1.53012 * 109.45085 * 301.00643 * 11 10 9 13 13 H 1.09000 * 113.42312 * 274.22675 * 12 11 10 14 14 C 1.54654 * 110.83305 * 143.88353 * 12 11 10 15 15 N 1.47804 * 85.79111 * 270.23048 * 14 12 11 16 16 C 1.34782 * 135.01226 * 153.84647 * 15 14 12 17 17 O 1.21651 * 119.99738 * 179.97438 * 16 15 14 18 18 C 1.47078 * 119.99547 * 359.97438 * 16 15 14 19 19 C 1.36020 * 127.14372 * 359.68185 * 18 16 15 20 20 O 1.33841 * 109.85484 * 179.86464 * 19 18 16 21 21 C 1.34911 * 111.34500 * 0.42450 * 20 19 18 22 22 C 1.38956 * 133.08905 * 179.77205 * 21 20 19 23 23 C 1.38042 * 119.95507 * 179.97438 * 22 21 20 24 24 F 1.35092 * 119.70293 * 179.97438 * 23 22 21 25 25 C 1.38903 * 120.59679 * 359.97438 * 23 22 21 26 26 C 1.37816 * 120.18017 * 0.02562 * 25 23 22 27 27 C 1.39119 * 119.65692 * 0.02562 * 26 25 23 28 28 C 1.46819 * 89.97548 * 333.80728 * 15 14 12 29 29 H 1.09001 * 111.56569 * 274.48108 * 28 15 14 30 30 C 1.45772 * 119.95475 * 25.13984 * 9 7 2 31 31 H 0.96995 * 119.99411 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.75211 * 117.70212 * 10 9 7 33 33 H 1.08994 * 109.75827 * 357.00244 * 10 9 7 34 34 H 1.09003 * 109.47078 * 60.99857 * 11 10 9 35 35 H 1.08994 * 109.47523 * 181.00237 * 11 10 9 36 36 H 1.08992 * 113.82335 * 24.45054 * 14 12 11 37 37 H 1.08997 * 113.81668 * 155.89025 * 14 12 11 38 38 H 1.08002 * 125.07369 * 359.97438 * 19 18 16 39 39 H 1.07992 * 120.02175 * 359.95080 * 22 21 20 40 40 H 1.08000 * 119.90881 * 179.97438 * 25 23 22 41 41 H 1.07991 * 120.16903 * 180.02562 * 26 25 23 42 42 H 1.09003 * 108.70002 * 19.74125 * 30 9 7 43 43 H 1.08995 * 108.70287 * 261.73168 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0669 -1.2156 0.2235 9 7 1.3552 -2.3711 -0.2816 10 6 1.8770 -3.6426 0.2289 11 6 2.1245 -4.5677 -0.9657 12 6 0.8140 -4.7784 -1.7271 13 1 0.2036 -5.5863 -1.3237 14 6 1.0708 -4.8690 -3.2494 15 7 0.8909 -3.4020 -3.2570 16 6 1.3212 -2.3928 -4.0400 17 8 0.9970 -1.2475 -3.7888 18 6 2.1825 -2.6765 -5.1979 19 6 2.6353 -3.8923 -5.6065 20 8 3.3917 -3.7511 -6.7016 21 6 3.4885 -2.4563 -7.0680 22 6 4.1471 -1.8106 -8.1073 23 6 4.0606 -0.4384 -8.2311 24 9 4.7034 0.1842 -9.2431 25 6 3.3186 0.3079 -7.3246 26 6 2.6593 -0.3170 -6.2882 27 6 2.7412 -1.6993 -6.1542 28 6 0.0483 -3.4998 -2.0586 29 1 -0.9903 -3.7085 -2.3150 30 6 0.1418 -2.3489 -1.0891 31 1 -0.4849 0.8401 -0.0004 32 1 1.1489 -4.0963 0.9014 33 1 2.8124 -3.4700 0.7611 34 1 2.8615 -4.1151 -1.6292 35 1 2.4969 -5.5284 -0.6104 36 1 2.0799 -5.1901 -3.5073 37 1 0.2987 -5.4120 -3.7945 38 1 2.4157 -4.8316 -5.1208 39 1 4.7266 -2.3817 -8.8173 40 1 3.2588 1.3809 -7.4317 41 1 2.0821 0.2633 -5.5837 42 1 0.1129 -1.4152 -1.6509 43 1 -0.7212 -2.3808 -0.4242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084471021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:44 Heat of formation + Delta-G solvation = 28.609791 kcal Electronic energy + Delta-G solvation = -30573.015675 eV Core-core repulsion = 26308.853498 eV Total energy + Delta-G solvation = -4264.162176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.13789 -42.73614 -40.43548 -37.87230 -37.48682 -35.23545 -32.93880 -32.14637 -30.80883 -30.20076 -29.77479 -28.35151 -27.06486 -24.18928 -23.83739 -23.60235 -22.57990 -22.17070 -21.05146 -19.73908 -18.46199 -17.90327 -17.52709 -16.78603 -16.57667 -16.49135 -15.80762 -15.77269 -15.61535 -15.32906 -15.13454 -14.33645 -14.24511 -13.94694 -13.73836 -13.51576 -13.28526 -13.11374 -13.09337 -12.71796 -12.48526 -12.23448 -12.08243 -11.92859 -11.55270 -11.26225 -11.09536 -10.69454 -10.65430 -10.52348 -10.22821 -10.16637 -9.94900 -9.82986 -9.73643 -9.05691 -8.91038 -8.37215 -8.31953 -8.17899 -6.61193 -5.66463 -3.08701 0.53557 0.98977 1.67200 2.33751 3.08460 3.27381 3.46969 3.52742 3.55696 3.75450 4.05221 4.25514 4.35419 4.57230 4.62722 4.64716 4.72276 4.85784 5.01084 5.12936 5.17761 5.28486 5.40305 5.44537 5.55135 5.58199 5.66046 5.74256 5.81131 5.92241 6.05482 6.07999 6.09436 6.21926 6.29422 6.32893 6.37537 6.48563 6.55337 6.74889 6.81805 6.95923 7.47755 7.75745 7.92976 8.17528 8.56270 8.67436 9.34516 9.98278 10.46189 11.41832 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.004215 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.551920 B = 6641.481933 C = 8527.077683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.012 3.988 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.585 5.585 10 C 0.147 3.853 11 C -0.119 4.119 12 C -0.106 4.106 13 H 0.089 0.911 14 C 0.083 3.917 15 N -0.627 5.627 16 C 0.603 3.397 17 O -0.507 6.507 18 C -0.197 4.197 19 C 0.045 3.955 20 O -0.183 6.183 21 C 0.074 3.926 22 C -0.148 4.148 23 C 0.126 3.874 24 F -0.132 7.132 25 C -0.167 4.167 26 C -0.022 4.022 27 C -0.102 4.102 28 C 0.128 3.872 29 H 0.075 0.925 30 C 0.164 3.836 31 H 0.253 0.747 32 H 0.021 0.979 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.219 0.781 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.152 0.848 42 H 0.107 0.893 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 -11.495 -13.764 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.186 4.186 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.384 4.384 8 H 0.080 0.920 9 N -0.307 5.307 10 C 0.020 3.980 11 C -0.158 4.158 12 C -0.125 4.125 13 H 0.107 0.893 14 C -0.040 4.040 15 N -0.363 5.363 16 C 0.392 3.608 17 O -0.383 6.383 18 C -0.202 4.202 19 C -0.022 4.022 20 O -0.082 6.082 21 C 0.026 3.974 22 C -0.167 4.167 23 C 0.106 3.894 24 F -0.111 7.111 25 C -0.186 4.186 26 C -0.040 4.040 27 C -0.104 4.104 28 C 0.025 3.975 29 H 0.093 0.907 30 C 0.038 3.962 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.235 0.765 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.170 0.830 42 H 0.125 0.875 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.037 -10.690 -13.937 18.023 hybrid contribution 0.483 0.845 -0.266 1.009 sum 4.520 -9.846 -14.203 17.863 Atomic orbital electron populations 1.69985 1.05174 1.25421 1.54211 1.24917 0.95267 0.98071 1.00371 0.86393 0.78941 0.83687 0.77854 1.21047 1.21635 1.21146 1.19041 0.91481 0.84464 1.43406 0.92020 1.43487 1.28920 1.01695 1.56632 1.20738 0.97460 0.87310 0.92445 1.21883 0.94842 0.99466 0.99628 1.22850 0.98683 0.97678 0.93325 0.89251 1.23766 1.00754 0.81794 0.97733 1.49685 1.51666 1.05641 1.29319 1.16513 0.79952 0.84274 0.80078 1.90867 1.57331 1.19663 1.70417 1.21213 1.06289 0.92519 1.00144 1.24858 0.91617 0.99842 0.85888 1.83849 1.59020 1.25795 1.39584 1.18996 0.99816 0.81626 0.96920 1.19509 1.05239 0.92417 0.99585 1.17080 0.95506 0.89481 0.87289 1.91517 1.79547 1.82393 1.57641 1.21102 1.00426 1.01213 0.95854 1.20666 0.95407 0.92196 0.95773 1.19504 1.00565 0.94490 0.95823 1.22728 0.93198 0.96962 0.84617 0.90708 1.20162 0.88865 0.96065 0.91093 0.93716 0.96158 0.92543 0.92101 0.92605 0.90739 0.89860 0.76466 0.83732 0.83718 0.83000 0.87512 0.94974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 10.91 55.49 0.61 -26.47 16 2 C 0.01 0.36 4.97 -17.43 -0.09 0.27 16 3 Si 0.90 23.13 29.58 -169.99 -5.03 18.11 16 4 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.25 -7.19 9.55 -15.06 -0.14 -7.34 16 8 H 0.06 1.73 7.84 -52.49 -0.41 1.31 16 9 N -0.58 -14.61 3.02 -175.00 -0.53 -15.14 16 10 C 0.15 2.93 6.47 -3.92 -0.03 2.91 16 11 C -0.12 -1.84 5.66 -26.67 -0.15 -1.99 16 12 C -0.11 -1.47 4.39 -89.97 -0.40 -1.87 16 13 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 14 C 0.08 0.94 6.61 -3.00 -0.02 0.92 16 15 N -0.63 -10.69 3.34 -175.41 -0.59 -11.27 16 16 C 0.60 11.83 7.97 -12.67 -0.10 11.73 16 17 O -0.51 -12.39 15.39 5.23 0.08 -12.31 16 18 C -0.20 -3.18 6.31 -103.25 -0.65 -3.83 16 19 C 0.04 0.54 11.18 29.94 0.33 0.88 16 20 O -0.18 -2.29 10.53 5.24 0.06 -2.23 16 21 C 0.07 1.00 7.39 -38.57 -0.28 0.71 16 22 C -0.15 -1.74 10.03 -39.39 -0.40 -2.14 16 23 C 0.13 1.52 7.28 -39.41 -0.29 1.24 16 24 F -0.13 -1.55 17.25 2.25 0.04 -1.51 16 25 C -0.17 -2.11 10.01 -39.49 -0.40 -2.50 16 26 C -0.02 -0.34 9.88 -39.41 -0.39 -0.73 16 27 C -0.10 -1.62 6.29 -104.96 -0.66 -2.28 16 28 C 0.13 2.32 4.23 -69.59 -0.29 2.02 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 C 0.16 3.96 4.61 -5.55 -0.03 3.94 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 1.12 7.88 -51.93 -0.41 0.71 16 34 H 0.06 1.05 7.69 -51.93 -0.40 0.65 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.69 6.05 -51.93 -0.31 0.38 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.22 1.80 5.04 -52.49 -0.26 1.54 16 39 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.15 2.50 7.53 -52.49 -0.40 2.11 16 42 H 0.11 3.05 4.83 -51.93 -0.25 2.80 16 43 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -34.41 354.15 -8.95 -43.36 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.95 Total: 0.17 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -3.97 Total: 1.96 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.51 Total: -52.88 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.14 Total: -14.54 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.03 Total: 18.11 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.41 -8.95 -43.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084471021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.971 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds