Wall clock time and date at job start Wed Apr 1 2020 03:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86795 * 120.00469 * 2 1 4 4 H 1.48501 * 109.47198 * 264.98886 * 3 2 1 5 5 H 1.48500 * 109.47015 * 24.98616 * 3 2 1 6 6 H 1.48498 * 109.47114 * 144.98726 * 3 2 1 7 7 C 1.38823 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99692 * 189.12183 * 7 2 1 9 9 N 1.36939 * 119.99821 * 9.13042 * 7 2 1 10 10 C 1.50235 * 130.83980 * 10.22965 * 9 7 2 11 11 H 1.09002 * 115.86118 * 359.62586 * 10 9 7 12 12 C 1.55845 * 101.05045 * 233.95033 * 10 9 7 13 13 C 1.54851 * 103.44537 * 327.06178 * 12 10 9 14 14 C 1.50233 * 130.83467 * 190.20398 * 9 7 2 15 15 H 1.09002 * 115.86097 * 359.66467 * 14 9 7 16 16 C 1.55844 * 101.05043 * 233.98841 * 14 9 7 17 17 H 1.08990 * 110.62910 * 85.71612 * 16 14 9 18 18 N 1.46502 * 110.62336 * 208.57764 * 16 14 9 19 19 C 1.34778 * 119.99814 * 274.12586 * 18 16 14 20 20 O 1.21655 * 119.99942 * 0.02562 * 19 18 16 21 21 C 1.47078 * 120.00062 * 179.97438 * 19 18 16 22 22 C 1.36061 * 127.13782 * 0.03925 * 21 19 18 23 23 O 1.33797 * 109.85221 * 179.97438 * 22 21 19 24 24 C 1.34953 * 111.34105 * 359.97438 * 23 22 21 25 25 C 1.38968 * 133.07292 * 179.97438 * 24 23 22 26 26 C 1.37824 * 120.00745 * 180.02562 * 25 24 23 27 27 C 1.38881 * 120.62782 * 359.97438 * 26 25 24 28 28 F 1.35105 * 119.92696 * 180.02562 * 27 26 25 29 29 C 1.38043 * 120.14739 * 359.97438 * 27 26 25 30 30 C 1.39111 * 119.61125 * 0.06002 * 29 27 26 31 31 C 1.54860 * 103.44424 * 327.06312 * 16 14 9 32 32 H 0.97004 * 119.99623 * 359.97438 * 1 2 3 33 33 H 1.08992 * 110.62692 * 85.55298 * 12 10 9 34 34 H 1.09001 * 110.62427 * 208.41357 * 12 10 9 35 35 H 1.08998 * 110.62849 * 241.51087 * 13 12 10 36 36 H 1.08999 * 110.62662 * 118.49061 * 13 12 10 37 37 H 0.97003 * 120.00043 * 94.14131 * 18 16 14 38 38 H 1.08000 * 125.07439 * 359.96419 * 22 21 19 39 39 H 1.08004 * 119.99829 * 0.02562 * 25 24 23 40 40 H 1.07997 * 119.68719 * 179.97438 * 26 25 24 41 41 H 1.08004 * 120.19704 * 180.02562 * 29 27 26 42 42 H 1.09001 * 110.62103 * 118.49181 * 31 16 14 43 43 H 1.09003 * 110.62514 * 241.51160 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.6037 1.9851 -1.3947 5 1 1.3988 2.6809 0.5914 6 1 3.4908 1.4729 0.8033 7 6 2.0102 -1.2023 0.0005 8 1 3.0799 -1.2081 0.1488 9 7 1.3384 -2.3807 -0.1871 10 6 -0.0783 -2.6474 -0.6101 11 1 -0.6920 -1.7665 -0.7988 12 6 -0.5662 -3.5717 0.5460 13 6 0.7074 -4.3602 0.9385 14 6 1.7914 -3.8049 -0.0339 15 1 2.8280 -3.9437 0.2732 16 6 1.4200 -4.3884 -1.4305 17 1 2.2215 -4.2093 -2.1470 18 7 1.1298 -5.8209 -1.3306 19 6 2.1331 -6.7181 -1.3997 20 8 3.2798 -6.3384 -1.5446 21 6 1.8419 -8.1562 -1.2989 22 6 0.6228 -8.7381 -1.1362 23 8 0.7570 -10.0684 -1.0882 24 6 2.0492 -10.4365 -1.2147 25 6 2.6875 -11.6709 -1.2269 26 6 4.0561 -11.7377 -1.3758 27 6 4.8100 -10.5797 -1.5152 28 9 6.1507 -10.6617 -1.6608 29 6 4.1925 -9.3451 -1.5064 30 6 2.8117 -9.2683 -1.3558 31 6 0.1463 -3.5999 -1.8229 32 1 -0.4850 0.8401 0.0004 33 1 -0.9247 -2.9781 1.3869 34 1 -1.3460 -4.2473 0.1943 35 1 0.5613 -5.4288 0.7808 36 1 0.9805 -4.1576 1.9740 37 1 0.2155 -6.1236 -1.2149 38 1 -0.3135 -8.2055 -1.0573 39 1 2.1111 -12.5780 -1.1198 40 1 4.5469 -12.6997 -1.3842 41 1 4.7780 -8.4441 -1.6151 42 1 0.3151 -3.0272 -2.7349 43 1 -0.7013 -4.2747 -1.9433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096432136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:03 Heat of formation + Delta-G solvation = -16.235673 kcal Electronic energy + Delta-G solvation = -29619.487484 eV Core-core repulsion = 25353.380662 eV Total energy + Delta-G solvation = -4266.106822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.97967 -43.69422 -41.42737 -39.65502 -38.73837 -35.53113 -34.40390 -33.85344 -31.35568 -31.02602 -30.85454 -30.41560 -29.05295 -26.25133 -24.92784 -24.40902 -23.45866 -22.77395 -21.68941 -21.04293 -20.19916 -19.32068 -19.04895 -18.71452 -17.86977 -17.45808 -17.12419 -16.83162 -16.66333 -16.57714 -16.36735 -16.16459 -15.91516 -15.32793 -15.26180 -14.85549 -14.41182 -14.11074 -13.98967 -13.95330 -13.73639 -13.45329 -13.21669 -12.99748 -12.85547 -12.81637 -12.61482 -12.36505 -12.10961 -11.98997 -11.92173 -11.62419 -11.33600 -11.32679 -11.10921 -10.86764 -10.78000 -10.05821 -9.63355 -9.43174 -8.83796 -7.85699 -5.20743 -0.39695 -0.00536 0.60828 1.44715 1.46228 1.53531 1.54002 2.07229 2.15056 2.48796 2.49991 3.00340 3.29806 3.35148 3.44397 3.53978 3.67965 3.90919 4.02551 4.07234 4.12930 4.14393 4.19490 4.33495 4.42837 4.47875 4.61948 4.70027 4.73451 4.79550 4.91690 4.99070 4.99313 5.03288 5.07176 5.08069 5.15119 5.20525 5.33520 5.43991 5.48237 5.55226 5.76104 5.87400 5.89210 6.21581 6.60182 7.02380 7.26263 7.66463 8.54957 9.24555 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.002538 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.898530 B =11029.965456 C =12000.063928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.057 4.057 3 Si 0.971 3.029 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.230 4.230 8 H 0.065 0.935 9 N -0.618 5.618 10 C 0.144 3.856 11 H 0.107 0.893 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.115 3.885 15 H 0.059 0.941 16 C 0.150 3.850 17 H 0.054 0.946 18 N -0.689 5.689 19 C 0.583 3.417 20 O -0.587 6.587 21 C -0.265 4.265 22 C 0.120 3.880 23 O -0.170 6.170 24 C 0.028 3.972 25 C -0.055 4.055 26 C -0.121 4.121 27 C 0.079 3.921 28 F -0.144 7.144 29 C -0.130 4.130 30 C -0.090 4.090 31 C -0.125 4.125 32 H 0.250 0.750 33 H 0.030 0.970 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.034 0.966 37 H 0.416 0.584 38 H 0.272 0.728 39 H 0.187 0.813 40 H 0.184 0.816 41 H 0.119 0.881 42 H 0.052 0.948 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.119 -27.505 -3.258 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.251 4.251 3 Si 0.800 3.200 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.359 4.359 8 H 0.083 0.917 9 N -0.340 5.340 10 C 0.038 3.962 11 H 0.125 0.875 12 C -0.159 4.159 13 C -0.156 4.156 14 C 0.007 3.993 15 H 0.077 0.923 16 C 0.043 3.957 17 H 0.072 0.928 18 N -0.341 5.341 19 C 0.372 3.628 20 O -0.468 6.468 21 C -0.270 4.270 22 C 0.052 3.948 23 O -0.068 6.068 24 C -0.019 4.019 25 C -0.073 4.073 26 C -0.139 4.139 27 C 0.060 3.940 28 F -0.123 7.123 29 C -0.150 4.150 30 C -0.092 4.092 31 C -0.165 4.165 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.254 0.746 38 H 0.288 0.712 39 H 0.204 0.796 40 H 0.201 0.799 41 H 0.137 0.863 42 H 0.071 0.929 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.446 -27.113 -3.296 27.529 hybrid contribution 1.153 1.915 0.135 2.239 sum -2.293 -25.198 -3.160 25.499 Atomic orbital electron populations 1.69836 1.05803 1.25326 1.57655 1.25406 0.96499 1.00111 1.03095 0.85206 0.77540 0.79754 0.77488 1.21445 1.21637 1.20420 1.19212 0.90921 0.84081 1.41705 0.91720 1.46711 1.10230 0.99365 1.77703 1.23386 0.86035 0.95232 0.91501 0.87523 1.22894 0.96583 0.97736 0.98651 1.22803 0.95809 0.99421 0.97526 1.23325 0.95907 0.85052 0.95003 0.92284 1.22080 0.97880 0.78625 0.97097 0.92818 1.45703 1.10064 1.05283 1.73034 1.17461 0.84765 0.84879 0.75686 1.90787 1.22838 1.81395 1.51790 1.20847 0.94596 0.92475 1.19091 1.25413 0.99494 0.79454 0.90485 1.83919 1.25621 1.23548 1.73692 1.19813 0.81436 0.95267 1.05352 1.20224 0.92843 0.94771 0.99428 1.21255 0.93006 0.98310 1.01313 1.17709 0.77453 0.94428 1.04442 1.91495 1.30294 1.97106 1.93388 1.20517 0.94003 0.97492 1.02954 1.19361 0.93426 0.92872 1.03490 1.23146 0.96244 0.98252 0.98823 0.94090 0.95110 0.88693 0.89158 0.94699 0.74575 0.71227 0.79605 0.79901 0.86269 0.92905 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.25 10.75 21.65 0.23 -54.01 16 2 C -0.06 -3.25 5.46 84.87 0.46 -2.78 16 3 Si 0.97 46.40 29.56 68.60 2.03 48.43 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.23 -13.17 10.55 84.04 0.89 -12.28 16 8 H 0.06 3.72 7.84 -2.91 -0.02 3.70 16 9 N -0.62 -31.21 2.97 -615.25 -1.83 -33.04 16 10 C 0.14 6.20 4.63 46.23 0.21 6.42 16 11 H 0.11 5.40 5.89 -2.39 -0.01 5.39 16 12 C -0.12 -4.20 6.44 32.21 0.21 -4.00 16 13 C -0.12 -4.01 6.33 32.21 0.20 -3.81 16 14 C 0.12 4.84 5.35 46.23 0.25 5.08 16 15 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 16 C 0.15 5.25 3.08 46.61 0.14 5.39 16 17 H 0.05 2.23 7.70 -2.39 -0.02 2.21 16 18 N -0.69 -17.13 3.62 -438.47 -1.59 -18.71 16 19 C 0.58 17.27 7.80 86.56 0.67 17.94 16 20 O -0.59 -23.83 16.01 -4.21 -0.07 -23.90 16 21 C -0.27 -5.93 6.31 -18.98 -0.12 -6.05 16 22 C 0.12 1.42 11.52 67.31 0.78 2.20 16 23 O -0.17 -2.31 10.53 -4.20 -0.04 -2.35 16 24 C 0.03 0.48 7.39 22.93 0.17 0.65 16 25 C -0.05 -0.62 10.06 22.35 0.22 -0.40 16 26 C -0.12 -1.58 9.99 22.33 0.22 -1.36 16 27 C 0.08 1.70 7.30 22.38 0.16 1.86 16 28 F -0.14 -3.40 17.26 44.97 0.78 -2.62 16 29 C -0.13 -3.50 9.86 22.43 0.22 -3.28 16 30 C -0.09 -2.18 6.29 -20.10 -0.13 -2.30 16 31 C -0.13 -4.16 6.20 32.21 0.20 -3.96 16 32 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 33 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 2.37 7.82 -2.39 -0.02 2.35 16 35 H 0.09 2.34 6.48 -2.39 -0.02 2.33 16 36 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.42 6.20 6.94 -92.71 -0.64 5.56 16 38 H 0.27 0.04 7.41 -2.91 -0.02 0.02 16 39 H 0.19 0.61 8.06 -2.91 -0.02 0.58 16 40 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 41 H 0.12 3.83 7.53 -2.91 -0.02 3.81 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.11 2.47 7.34 -2.39 -0.02 2.45 16 Total: -1.00 -79.92 358.54 4.71 -75.21 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.43 Total: 11.69 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 4.77 Total: -0.68 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -3.19 Total: -105.77 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.11 Total: -26.25 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.62 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -79.92 4.71 -75.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096432136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.971 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds