Wall clock time and date at job start Wed Apr 1 2020 03:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47102 * 299.99508 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99856 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.50234 * 130.84057 * 359.66430 * 9 7 2 11 11 H 1.09005 * 115.85896 * 359.67480 * 10 9 7 12 12 C 1.56855 * 100.58534 * 234.62702 * 10 9 7 13 13 C 1.54844 * 103.35668 * 326.65882 * 12 10 9 14 14 C 1.50240 * 130.83569 * 179.97438 * 9 7 2 15 15 H 1.08998 * 115.85647 * 359.61635 * 14 9 7 16 16 C 1.55840 * 101.04815 * 233.93377 * 14 9 7 17 17 H 1.09008 * 110.62430 * 208.57510 * 16 14 9 18 18 N 1.46499 * 110.62582 * 85.55880 * 16 14 9 19 19 C 1.34774 * 120.00333 * 154.99586 * 18 16 14 20 20 O 1.21650 * 119.99795 * 359.97438 * 19 18 16 21 21 C 1.47084 * 120.00410 * 179.97438 * 19 18 16 22 22 C 1.36026 * 127.13635 * 0.02562 * 21 19 18 23 23 O 1.33830 * 109.85277 * 179.97438 * 22 21 19 24 24 C 1.34909 * 111.35076 * 0.02562 * 23 22 21 25 25 C 1.38948 * 133.09174 * 179.97438 * 24 23 22 26 26 C 1.38046 * 119.95764 * 180.02562 * 25 24 23 27 27 F 1.35094 * 119.70671 * 180.02562 * 26 25 24 28 28 C 1.38897 * 120.59845 * 359.97293 * 26 25 24 29 29 C 1.37824 * 120.17475 * 0.02901 * 28 26 25 30 30 C 1.39118 * 119.66198 * 359.71190 * 29 28 26 31 31 C 1.55478 * 103.33312 * 326.97876 * 16 14 9 32 32 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 33 33 H 1.09001 * 110.43268 * 208.30232 * 12 10 9 34 34 H 1.09001 * 111.03898 * 85.29550 * 12 10 9 35 35 H 1.09004 * 110.62498 * 241.78509 * 13 12 10 36 36 H 1.08994 * 110.76793 * 118.82867 * 13 12 10 37 37 H 0.96999 * 119.99965 * 334.99342 * 18 16 14 38 38 H 1.07997 * 125.07365 * 359.96854 * 22 21 19 39 39 H 1.07998 * 120.02488 * 359.97438 * 25 24 23 40 40 H 1.07996 * 119.91786 * 180.02562 * 28 26 25 41 41 H 1.07998 * 120.16590 * 180.02562 * 29 28 26 42 42 H 1.09002 * 110.61164 * 241.58711 * 31 16 14 43 43 H 1.08997 * 110.75754 * 118.48172 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1500 -2.6706 0.0067 11 1 -0.8014 -1.7967 0.0177 12 6 -0.2593 -3.6048 1.2619 13 6 1.0817 -4.3790 1.2494 14 6 1.8187 -3.8072 0.0005 15 1 2.9012 -3.9343 -0.0060 16 6 1.0662 -4.3849 -1.2358 17 1 0.8923 -5.4541 -1.1144 18 7 1.8152 -4.1190 -2.4665 19 6 1.6505 -4.9155 -3.5411 20 8 0.8802 -5.8556 -3.4890 21 6 2.4021 -4.6482 -4.7768 22 6 3.2951 -3.6454 -4.9942 23 8 3.7749 -3.7265 -6.2409 24 6 3.2363 -4.7682 -6.9078 25 6 3.4059 -5.2607 -8.1959 26 6 2.6992 -6.3728 -8.6074 27 9 2.8684 -6.8476 -9.8608 28 6 1.8163 -7.0088 -7.7441 29 6 1.6364 -6.5331 -6.4631 30 6 2.3481 -5.4162 -6.0372 31 6 -0.2803 -3.6076 -1.2314 32 1 -0.4850 0.8401 -0.0004 33 1 -1.0997 -4.2905 1.1539 34 1 -0.3570 -3.0208 2.1771 35 1 0.9064 -5.4488 1.1352 36 1 1.6517 -4.1793 2.1567 37 1 2.4297 -3.3696 -2.5079 38 1 3.5750 -2.8956 -4.2691 39 1 4.0896 -4.7732 -8.8751 40 1 1.2694 -7.8783 -8.0773 41 1 0.9503 -7.0280 -5.7918 42 1 -1.1187 -4.2930 -1.1078 43 1 -0.3921 -3.0233 -2.1448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097392264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:09 Heat of formation + Delta-G solvation = -2.771906 kcal Electronic energy + Delta-G solvation = -29595.145363 eV Core-core repulsion = 25329.622374 eV Total energy + Delta-G solvation = -4265.522989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.23205 -42.83495 -39.72232 -38.27929 -37.90857 -33.93231 -32.99108 -32.51487 -30.90255 -29.54834 -29.15008 -28.75779 -27.62465 -24.41512 -24.09511 -23.43344 -22.56733 -21.16719 -19.97877 -19.76086 -18.81553 -18.26070 -17.87082 -17.06325 -16.89786 -16.62373 -16.17907 -15.76188 -15.72793 -15.21976 -14.91467 -14.69767 -14.39237 -14.04240 -13.90923 -13.84760 -13.41594 -13.21774 -12.87148 -12.40496 -12.21097 -12.11340 -11.89143 -11.37604 -11.34732 -11.17267 -10.99072 -10.97645 -10.58838 -10.40164 -10.28737 -10.13937 -10.00104 -9.87771 -9.32880 -9.24376 -9.04183 -9.02830 -8.62073 -8.38879 -7.01789 -5.81515 -3.21055 0.42823 0.86958 1.54041 2.26806 3.12283 3.30518 3.35671 3.38568 3.39264 3.56434 3.98961 4.15576 4.33864 4.38818 4.53646 4.63196 4.89167 5.05763 5.10303 5.18157 5.29857 5.51526 5.58327 5.62984 5.63551 5.82385 5.84983 5.89174 5.99409 6.02921 6.07304 6.10245 6.23592 6.26599 6.36430 6.43206 6.54676 6.68078 6.71376 6.76725 6.90178 7.03848 7.25959 7.40315 7.72615 7.86867 8.10574 8.47773 9.00009 9.63458 10.44494 11.27280 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.002874 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.624582 B = 9740.159440 C =11075.722692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.217 4.217 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.154 3.846 11 H 0.153 0.847 12 C -0.139 4.139 13 C -0.127 4.127 14 C 0.125 3.875 15 H 0.087 0.913 16 C 0.130 3.870 17 H 0.083 0.917 18 N -0.699 5.699 19 C 0.582 3.418 20 O -0.545 6.545 21 C -0.216 4.216 22 C 0.069 3.931 23 O -0.179 6.179 24 C 0.073 3.927 25 C -0.145 4.145 26 C 0.124 3.876 27 F -0.132 7.132 28 C -0.167 4.167 29 C -0.027 4.027 30 C -0.101 4.101 31 C -0.141 4.141 32 H 0.254 0.746 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.400 0.600 38 H 0.223 0.777 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.150 0.850 42 H 0.054 0.946 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.269 -10.762 -11.265 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.313 5.313 10 C 0.047 3.953 11 H 0.170 0.830 12 C -0.179 4.179 13 C -0.167 4.167 14 C 0.016 3.984 15 H 0.105 0.895 16 C 0.024 3.976 17 H 0.101 0.899 18 N -0.348 5.348 19 C 0.369 3.631 20 O -0.424 6.424 21 C -0.220 4.220 22 C 0.001 3.999 23 O -0.078 6.078 24 C 0.026 3.974 25 C -0.164 4.164 26 C 0.105 3.895 27 F -0.111 7.111 28 C -0.185 4.185 29 C -0.045 4.045 30 C -0.102 4.102 31 C -0.181 4.181 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.235 0.765 38 H 0.239 0.761 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.073 0.927 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.952 -10.924 -11.378 16.533 hybrid contribution 0.746 1.180 -0.088 1.399 sum 5.698 -9.744 -11.466 16.090 Atomic orbital electron populations 1.69469 1.05016 1.24944 1.57084 1.24706 0.95582 0.97497 1.02718 0.86018 0.78553 0.83661 0.77311 1.20592 1.21808 1.21797 1.19037 0.90205 0.81884 1.43326 0.90348 1.46568 1.01703 0.98559 1.84457 1.23946 0.87348 0.95305 0.88699 0.83034 1.23231 0.95167 0.98301 1.01193 1.22866 0.97767 0.97658 0.98415 1.23170 0.96060 0.87002 0.92159 0.89500 1.22761 0.92779 0.98802 0.83269 0.89938 1.45846 1.45168 1.31032 1.12709 1.17043 0.81559 0.82619 0.81880 1.90745 1.37805 1.30533 1.83309 1.21131 1.04944 0.99953 0.96017 1.24663 0.93206 0.98239 0.83828 1.83876 1.57410 1.43019 1.23526 1.19015 0.96095 0.88764 0.93568 1.19559 1.04951 0.98313 0.93591 1.17076 0.98042 0.94122 0.80285 1.91523 1.94385 1.87408 1.37753 1.21088 1.00977 1.02618 0.93856 1.20577 0.96340 0.92977 0.94602 1.19492 0.99927 0.98154 0.92639 1.23517 0.94842 0.98323 1.01429 0.93530 0.93400 0.92583 0.93003 0.92405 0.76508 0.76074 0.83633 0.83771 0.83211 0.92694 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.83 10.47 55.49 0.58 -24.25 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -5.36 10.59 -15.06 -0.16 -5.52 16 8 H 0.08 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.59 -13.23 2.97 -145.21 -0.43 -13.66 16 10 C 0.15 3.34 4.72 -62.26 -0.29 3.05 16 11 H 0.15 3.83 5.52 -51.93 -0.29 3.54 16 12 C -0.14 -2.65 6.50 -23.67 -0.15 -2.80 16 13 C -0.13 -2.20 6.46 -24.22 -0.16 -2.35 16 14 C 0.12 2.28 5.01 -62.78 -0.31 1.96 16 15 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 16 C 0.13 2.28 2.84 -65.10 -0.18 2.10 16 17 H 0.08 1.46 7.26 -51.92 -0.38 1.08 16 18 N -0.70 -11.16 5.08 -52.25 -0.27 -11.43 16 19 C 0.58 9.49 7.80 -12.67 -0.10 9.40 16 20 O -0.54 -10.36 15.93 5.23 0.08 -10.28 16 21 C -0.22 -2.99 6.31 -103.25 -0.65 -3.64 16 22 C 0.07 0.77 11.52 29.94 0.34 1.11 16 23 O -0.18 -2.10 10.53 5.27 0.06 -2.05 16 24 C 0.07 0.89 7.39 -38.57 -0.28 0.60 16 25 C -0.14 -1.51 10.03 -39.39 -0.40 -1.91 16 26 C 0.12 1.29 7.28 -39.41 -0.29 1.00 16 27 F -0.13 -1.36 17.25 2.25 0.04 -1.32 16 28 C -0.17 -1.68 10.01 -39.49 -0.40 -2.08 16 29 C -0.03 -0.33 9.88 -39.41 -0.39 -0.72 16 30 C -0.10 -1.35 6.29 -104.96 -0.66 -2.01 16 31 C -0.14 -2.75 6.28 -23.91 -0.15 -2.90 16 32 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.05 0.81 7.88 -51.93 -0.41 0.41 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.40 5.89 7.58 -40.82 -0.31 5.58 16 38 H 0.22 1.76 7.41 -52.49 -0.39 1.37 16 39 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.15 1.84 7.53 -52.49 -0.40 1.44 16 42 H 0.05 1.01 7.88 -51.93 -0.41 0.60 16 43 H 0.06 1.29 8.00 -51.93 -0.42 0.87 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -29.48 361.09 -8.90 -38.39 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.06 Total: 8.64 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -4.33 Total: -5.03 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.12 Total: -49.34 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.14 Total: -12.33 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.48 -8.90 -38.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097392264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.614 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds