Wall clock time and date at job start Wed Apr 1 2020 03:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99893 * 2 1 4 4 H 1.48500 * 109.46861 * 274.02099 * 3 2 1 5 5 H 1.48504 * 109.47128 * 34.02340 * 3 2 1 6 6 H 1.48500 * 109.47094 * 154.02396 * 3 2 1 7 7 C 1.38814 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00184 * 189.32408 * 7 2 1 9 9 N 1.36939 * 120.00003 * 9.32816 * 7 2 1 10 10 C 1.50235 * 130.83671 * 5.46090 * 9 7 2 11 11 H 1.09002 * 115.86408 * 0.37810 * 10 9 7 12 12 C 1.55845 * 101.05274 * 233.99247 * 10 9 7 13 13 C 1.54858 * 103.44251 * 327.06469 * 12 10 9 14 14 C 1.50235 * 130.84009 * 185.49328 * 9 7 2 15 15 H 1.09007 * 115.85664 * 359.62151 * 14 9 7 16 16 C 1.55842 * 101.04941 * 233.94563 * 14 9 7 17 17 H 1.09005 * 110.75913 * 208.50547 * 16 14 9 18 18 N 1.46495 * 110.62716 * 85.55213 * 16 14 9 19 19 C 1.34780 * 120.00056 * 159.52256 * 18 16 14 20 20 O 1.21653 * 119.99867 * 359.97438 * 19 18 16 21 21 C 1.46979 * 120.00032 * 179.97438 * 19 18 16 22 22 C 1.35808 * 125.13072 * 180.02562 * 21 19 18 23 23 C 1.46251 * 106.07938 * 179.97438 * 22 21 19 24 24 C 1.39731 * 134.12633 * 179.97438 * 23 22 21 25 25 C 1.37794 * 119.57117 * 179.97438 * 24 23 22 26 26 F 1.35110 * 119.87064 * 179.97438 * 25 24 23 27 27 C 1.39038 * 120.25256 * 359.97438 * 25 24 23 28 28 C 1.37759 * 120.72659 * 0.02562 * 27 25 24 29 29 C 1.39006 * 120.02543 * 0.02562 * 28 27 25 30 30 O 1.34786 * 133.12666 * 180.02562 * 29 28 27 31 31 C 1.54848 * 103.44665 * 327.05852 * 16 14 9 32 32 H 0.97005 * 120.00514 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.62908 * 85.54664 * 12 10 9 34 34 H 1.09003 * 110.62889 * 208.57573 * 12 10 9 35 35 H 1.09002 * 110.62364 * 241.51162 * 13 12 10 36 36 H 1.09000 * 110.76395 * 118.55919 * 13 12 10 37 37 H 0.97003 * 119.99991 * 339.51883 * 18 16 14 38 38 H 1.08003 * 126.95905 * 0.02562 * 22 21 19 39 39 H 1.07999 * 120.21471 * 359.97177 * 24 23 22 40 40 H 1.08001 * 119.64098 * 179.97438 * 27 25 24 41 41 H 1.07995 * 119.99024 * 179.72447 * 28 27 25 42 42 H 1.09002 * 110.62881 * 118.48753 * 31 16 14 43 43 H 1.09004 * 110.62859 * 241.35639 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4125 2.0955 -1.3966 5 1 1.4926 2.6266 0.7834 6 1 3.5876 1.4171 0.6132 7 6 2.0102 -1.2022 0.0005 8 1 3.0795 -1.2083 0.1521 9 7 1.3391 -2.3803 -0.1912 10 6 -0.1006 -2.6474 -0.5274 11 1 -0.7318 -1.7671 -0.6483 12 6 -0.4988 -3.6249 0.6192 13 6 0.8067 -4.4126 0.8903 14 6 1.8157 -3.8038 -0.1294 15 1 2.8723 -3.9418 0.1002 16 6 1.3551 -4.3336 -1.5207 17 1 1.1559 -5.4045 -1.4797 18 7 2.3596 -4.0360 -2.5447 19 6 2.3769 -4.7372 -3.6956 20 8 1.5587 -5.6175 -3.8839 21 6 3.3844 -4.4382 -4.7231 22 6 3.4967 -5.0765 -5.9166 23 6 4.6259 -4.4522 -6.6052 24 6 5.2404 -4.6513 -7.8442 25 6 6.3169 -3.8694 -8.2028 26 9 6.9160 -4.0571 -9.3992 27 6 6.7890 -2.8883 -7.3381 28 6 6.1917 -2.6823 -6.1140 29 6 5.1050 -3.4598 -5.7306 30 8 4.3363 -3.4870 -4.6238 31 6 0.0497 -3.5460 -1.7918 32 1 -0.4851 0.8400 -0.0004 33 1 -0.8045 -3.0713 1.5070 34 1 -1.2921 -4.2973 0.2924 35 1 0.6607 -5.4756 0.6980 36 1 1.1496 -4.2522 1.9125 37 1 3.0122 -3.3342 -2.3944 38 1 2.8771 -5.8816 -6.2832 39 1 4.8740 -5.4130 -8.5165 40 1 7.6337 -2.2814 -7.6291 41 1 6.5709 -1.9199 -5.4498 42 1 0.1497 -2.9338 -2.6881 43 1 -0.7969 -4.2262 -1.8853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097961973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:08 Heat of formation + Delta-G solvation = -1.860760 kcal Electronic energy + Delta-G solvation = -29466.509264 eV Core-core repulsion = 25201.025785 eV Total energy + Delta-G solvation = -4265.483479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.18656 -42.73448 -39.88220 -38.49896 -37.81363 -34.07494 -33.11140 -32.57676 -30.36528 -30.12970 -29.17314 -28.86817 -27.81853 -24.72570 -24.13716 -22.97644 -22.21068 -21.29113 -20.30803 -19.90834 -18.88959 -18.31221 -18.00357 -17.27538 -17.05477 -16.61744 -16.02104 -15.94756 -15.78300 -14.92168 -14.74496 -14.49153 -14.42368 -13.94399 -13.78688 -13.75164 -13.57009 -13.37501 -12.94292 -12.87486 -12.18924 -12.12286 -11.92364 -11.36522 -11.36075 -11.19789 -10.98861 -10.93028 -10.61004 -10.56696 -10.44488 -10.25804 -10.11978 -9.99505 -9.42291 -9.23070 -8.94001 -8.87854 -8.74090 -8.53511 -7.00342 -5.81909 -3.18208 0.22160 0.79889 1.59096 2.24907 3.12018 3.19154 3.25570 3.33596 3.38740 3.41204 3.82815 4.15400 4.30088 4.36848 4.57181 4.75236 4.83222 5.00708 5.04788 5.26366 5.27934 5.42157 5.56579 5.58584 5.60873 5.68469 5.75079 5.81384 5.97247 5.98079 5.98466 6.08426 6.17944 6.21099 6.34591 6.39893 6.52287 6.64400 6.69726 6.75326 6.88985 6.97778 7.25597 7.42837 7.71044 7.73120 8.07483 8.23345 9.00192 9.64849 10.45863 11.29205 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.003013 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.192972 B = 9290.827586 C =11043.013800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.218 4.218 8 H 0.079 0.921 9 N -0.589 5.589 10 C 0.158 3.842 11 H 0.146 0.854 12 C -0.135 4.135 13 C -0.127 4.127 14 C 0.125 3.875 15 H 0.090 0.910 16 C 0.127 3.873 17 H 0.084 0.916 18 N -0.686 5.686 19 C 0.590 3.410 20 O -0.523 6.523 21 C 0.000 4.000 22 C -0.127 4.127 23 C -0.115 4.115 24 C -0.099 4.099 25 C 0.079 3.921 26 F -0.137 7.137 27 C -0.121 4.121 28 C -0.075 4.075 29 C 0.059 3.941 30 O -0.175 6.175 31 C -0.146 4.146 32 H 0.254 0.746 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.410 0.590 38 H 0.173 0.827 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.059 0.941 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.681 -8.814 -11.481 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.310 5.310 10 C 0.051 3.949 11 H 0.163 0.837 12 C -0.174 4.174 13 C -0.167 4.167 14 C 0.016 3.984 15 H 0.108 0.892 16 C 0.021 3.979 17 H 0.102 0.898 18 N -0.334 5.334 19 C 0.374 3.626 20 O -0.402 6.402 21 C -0.051 4.051 22 C -0.148 4.148 23 C -0.116 4.116 24 C -0.118 4.118 25 C 0.060 3.940 26 F -0.116 7.116 27 C -0.139 4.139 28 C -0.093 4.093 29 C 0.011 3.989 30 O -0.076 6.076 31 C -0.186 4.186 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.245 0.755 38 H 0.190 0.810 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.078 0.922 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.164 -8.902 -11.320 17.070 hybrid contribution 0.858 1.081 -0.285 1.409 sum 10.022 -7.822 -11.606 17.214 Atomic orbital electron populations 1.69606 1.05034 1.25172 1.56415 1.24713 0.95560 0.97573 1.02538 0.86093 0.78625 0.83477 0.77503 1.21682 1.21766 1.20668 1.18992 0.91024 0.82185 1.42418 0.90359 1.46558 1.05908 0.98632 1.79911 1.23559 0.87402 0.95285 0.88648 0.83711 1.23018 0.95401 0.97969 1.01037 1.22862 0.97172 0.97497 0.99173 1.23165 0.96549 0.87183 0.91480 0.89223 1.22827 0.88324 0.98730 0.88034 0.89845 1.46024 1.34417 1.36733 1.16256 1.16686 0.82293 0.82574 0.81052 1.90863 1.38553 1.32453 1.78323 1.22367 0.92586 0.92127 0.97982 1.22651 0.97654 1.01836 0.92636 1.19621 0.98008 0.98489 0.95471 1.20445 0.95165 1.00427 0.95763 1.17333 0.95021 0.98831 0.82810 1.91517 1.82546 1.94650 1.42842 1.20926 1.01500 0.98451 0.93062 1.19832 0.93255 0.99667 0.96580 1.19746 0.94930 0.98343 0.85906 1.84124 1.37128 1.49147 1.37245 1.23502 0.95294 0.98585 1.01231 0.93534 0.92301 0.93325 0.92971 0.92288 0.75473 0.80952 0.83870 0.83289 0.83450 0.92246 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.30 10.64 55.49 0.59 -24.71 16 2 C -0.01 -0.20 5.47 -17.43 -0.10 -0.29 16 3 Si 0.91 21.12 29.56 -169.99 -5.03 16.09 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.22 -5.59 10.56 -15.06 -0.16 -5.75 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 N -0.59 -13.54 2.98 -145.82 -0.43 -13.97 16 10 C 0.16 3.47 4.67 -62.80 -0.29 3.18 16 11 H 0.15 3.69 5.73 -51.93 -0.30 3.39 16 12 C -0.13 -2.60 6.44 -24.23 -0.16 -2.75 16 13 C -0.13 -2.22 6.44 -24.23 -0.16 -2.38 16 14 C 0.12 2.33 5.04 -62.81 -0.32 2.02 16 15 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 16 C 0.13 2.24 2.73 -65.44 -0.18 2.06 16 17 H 0.08 1.44 7.36 -51.93 -0.38 1.06 16 18 N -0.69 -11.52 5.09 -52.61 -0.27 -11.78 16 19 C 0.59 9.74 7.79 -12.72 -0.10 9.64 16 20 O -0.52 -9.70 16.54 5.23 0.09 -9.61 16 21 C 0.00 0.00 7.07 -36.91 -0.26 -0.26 16 22 C -0.13 -1.60 10.81 -37.23 -0.40 -2.01 16 23 C -0.11 -1.35 6.38 -105.19 -0.67 -2.03 16 24 C -0.10 -0.98 10.08 -39.19 -0.40 -1.38 16 25 C 0.08 0.76 7.29 -39.45 -0.29 0.48 16 26 F -0.14 -1.36 17.26 2.25 0.04 -1.32 16 27 C -0.12 -1.02 9.99 -39.46 -0.39 -1.41 16 28 C -0.07 -0.72 10.06 -39.47 -0.40 -1.11 16 29 C 0.06 0.73 7.40 -38.37 -0.28 0.45 16 30 O -0.18 -2.48 10.28 2.61 0.03 -2.45 16 31 C -0.15 -2.84 6.22 -24.24 -0.15 -2.99 16 32 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 35 H 0.05 0.79 7.82 -51.93 -0.41 0.38 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.41 6.82 8.34 -40.82 -0.34 6.48 16 38 H 0.17 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 42 H 0.06 1.25 7.98 -51.93 -0.41 0.83 16 43 H 0.06 1.05 7.82 -51.93 -0.41 0.65 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -29.10 363.81 -9.36 -38.46 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.16 Total: 8.36 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -4.70 Total: -4.54 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.11 Total: -50.47 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.11 Total: -12.06 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.10 -9.36 -38.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097961973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.599 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds