Wall clock time and date at job start Wed Apr 1 2020 03:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99893 * 2 1 4 4 H 1.48500 * 109.46861 * 274.02099 * 3 2 1 5 5 H 1.48504 * 109.47128 * 34.02340 * 3 2 1 6 6 H 1.48500 * 109.47094 * 154.02396 * 3 2 1 7 7 C 1.38814 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00184 * 189.32408 * 7 2 1 9 9 N 1.36939 * 120.00003 * 9.32816 * 7 2 1 10 10 C 1.50235 * 130.83671 * 5.46090 * 9 7 2 11 11 H 1.09002 * 115.86408 * 0.37810 * 10 9 7 12 12 C 1.55845 * 101.05274 * 233.99247 * 10 9 7 13 13 C 1.54858 * 103.44251 * 327.06469 * 12 10 9 14 14 C 1.50235 * 130.84009 * 185.49328 * 9 7 2 15 15 H 1.09007 * 115.85664 * 359.62151 * 14 9 7 16 16 C 1.55842 * 101.04941 * 233.94563 * 14 9 7 17 17 H 1.09005 * 110.75913 * 208.50547 * 16 14 9 18 18 N 1.46495 * 110.62716 * 85.55213 * 16 14 9 19 19 C 1.34780 * 120.00056 * 159.52256 * 18 16 14 20 20 O 1.21653 * 119.99867 * 359.97438 * 19 18 16 21 21 C 1.46979 * 120.00032 * 179.97438 * 19 18 16 22 22 C 1.35808 * 125.13072 * 180.02562 * 21 19 18 23 23 C 1.46251 * 106.07938 * 179.97438 * 22 21 19 24 24 C 1.39731 * 134.12633 * 179.97438 * 23 22 21 25 25 C 1.37794 * 119.57117 * 179.97438 * 24 23 22 26 26 F 1.35110 * 119.87064 * 179.97438 * 25 24 23 27 27 C 1.39038 * 120.25256 * 359.97438 * 25 24 23 28 28 C 1.37759 * 120.72659 * 0.02562 * 27 25 24 29 29 C 1.39006 * 120.02543 * 0.02562 * 28 27 25 30 30 O 1.34786 * 133.12666 * 180.02562 * 29 28 27 31 31 C 1.54848 * 103.44665 * 327.05852 * 16 14 9 32 32 H 0.97005 * 120.00514 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.62908 * 85.54664 * 12 10 9 34 34 H 1.09003 * 110.62889 * 208.57573 * 12 10 9 35 35 H 1.09002 * 110.62364 * 241.51162 * 13 12 10 36 36 H 1.09000 * 110.76395 * 118.55919 * 13 12 10 37 37 H 0.97003 * 119.99991 * 339.51883 * 18 16 14 38 38 H 1.08003 * 126.95905 * 0.02562 * 22 21 19 39 39 H 1.07999 * 120.21471 * 359.97177 * 24 23 22 40 40 H 1.08001 * 119.64098 * 179.97438 * 27 25 24 41 41 H 1.07995 * 119.99024 * 179.72447 * 28 27 25 42 42 H 1.09002 * 110.62881 * 118.48753 * 31 16 14 43 43 H 1.09004 * 110.62859 * 241.35639 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4125 2.0955 -1.3966 5 1 1.4926 2.6266 0.7834 6 1 3.5876 1.4171 0.6132 7 6 2.0102 -1.2022 0.0005 8 1 3.0795 -1.2083 0.1521 9 7 1.3391 -2.3803 -0.1912 10 6 -0.1006 -2.6474 -0.5274 11 1 -0.7318 -1.7671 -0.6483 12 6 -0.4988 -3.6249 0.6192 13 6 0.8067 -4.4126 0.8903 14 6 1.8157 -3.8038 -0.1294 15 1 2.8723 -3.9418 0.1002 16 6 1.3551 -4.3336 -1.5207 17 1 1.1559 -5.4045 -1.4797 18 7 2.3596 -4.0360 -2.5447 19 6 2.3769 -4.7372 -3.6956 20 8 1.5587 -5.6175 -3.8839 21 6 3.3844 -4.4382 -4.7231 22 6 3.4967 -5.0765 -5.9166 23 6 4.6259 -4.4522 -6.6052 24 6 5.2404 -4.6513 -7.8442 25 6 6.3169 -3.8694 -8.2028 26 9 6.9160 -4.0571 -9.3992 27 6 6.7890 -2.8883 -7.3381 28 6 6.1917 -2.6823 -6.1140 29 6 5.1050 -3.4598 -5.7306 30 8 4.3363 -3.4870 -4.6238 31 6 0.0497 -3.5460 -1.7918 32 1 -0.4851 0.8400 -0.0004 33 1 -0.8045 -3.0713 1.5070 34 1 -1.2921 -4.2973 0.2924 35 1 0.6607 -5.4756 0.6980 36 1 1.1496 -4.2522 1.9125 37 1 3.0122 -3.3342 -2.3944 38 1 2.8771 -5.8816 -6.2832 39 1 4.8740 -5.4130 -8.5165 40 1 7.6337 -2.2814 -7.6291 41 1 6.5709 -1.9199 -5.4498 42 1 0.1497 -2.9338 -2.6881 43 1 -0.7969 -4.2262 -1.8853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097961973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:07 Heat of formation + Delta-G solvation = -17.475317 kcal Electronic energy + Delta-G solvation = -29467.186362 eV Core-core repulsion = 25201.025785 eV Total energy + Delta-G solvation = -4266.160577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.94644 -43.67647 -41.31934 -39.90130 -38.66830 -35.48964 -34.43398 -34.03089 -31.20579 -31.15721 -30.97984 -30.32135 -29.25440 -26.23016 -25.52666 -23.84852 -23.22863 -22.48438 -21.60404 -21.51867 -20.40648 -19.46864 -18.90100 -18.83649 -18.12532 -17.62734 -17.35170 -16.89566 -16.75692 -16.57526 -15.97783 -15.89070 -15.51136 -15.37315 -15.08974 -14.90588 -14.44040 -14.32876 -14.24421 -13.77822 -13.75996 -13.67394 -13.00357 -12.94972 -12.87184 -12.78301 -12.70922 -12.12857 -12.11147 -11.94104 -11.90832 -11.77963 -11.59644 -11.45292 -11.13436 -10.82149 -10.79637 -10.17518 -9.65439 -9.46762 -8.87180 -7.79335 -5.15334 -0.67081 -0.01427 0.63475 1.28029 1.48234 1.49304 1.57102 1.96181 2.06617 2.36168 2.50143 2.97304 3.32405 3.36073 3.42533 3.43928 3.76261 3.85062 3.98193 4.01209 4.05334 4.19088 4.26607 4.37424 4.44671 4.46941 4.62686 4.64371 4.68076 4.77619 4.82344 4.90203 4.94902 4.97025 5.06424 5.11085 5.16311 5.18268 5.35882 5.39051 5.49110 5.55061 5.69301 5.83024 5.89002 6.23238 6.40873 6.92645 7.04203 7.71749 8.58073 9.30443 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.003013 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.192972 B = 9290.827586 C =11043.013800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.066 4.066 3 Si 0.969 3.031 4 H -0.294 1.294 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.215 4.215 8 H 0.084 0.916 9 N -0.610 5.610 10 C 0.144 3.856 11 H 0.106 0.894 12 C -0.128 4.128 13 C -0.118 4.118 14 C 0.126 3.874 15 H 0.104 0.896 16 C 0.139 3.861 17 H 0.099 0.901 18 N -0.689 5.689 19 C 0.595 3.405 20 O -0.548 6.548 21 C -0.032 4.032 22 C -0.108 4.108 23 C -0.131 4.131 24 C -0.096 4.096 25 C 0.074 3.926 26 F -0.137 7.137 27 C -0.103 4.103 28 C -0.080 4.080 29 C 0.042 3.958 30 O -0.190 6.190 31 C -0.136 4.136 32 H 0.245 0.755 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.409 0.591 38 H 0.187 0.813 39 H 0.163 0.837 40 H 0.181 0.819 41 H 0.168 0.832 42 H 0.035 0.965 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.821 -10.104 -12.675 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.259 4.259 3 Si 0.800 3.200 4 H -0.221 1.221 5 H -0.228 1.228 6 H -0.192 1.192 7 C -0.344 4.344 8 H 0.102 0.898 9 N -0.332 5.332 10 C 0.037 3.963 11 H 0.124 0.876 12 C -0.167 4.167 13 C -0.158 4.158 14 C 0.019 3.981 15 H 0.122 0.878 16 C 0.033 3.967 17 H 0.116 0.884 18 N -0.336 5.336 19 C 0.381 3.619 20 O -0.428 6.428 21 C -0.082 4.082 22 C -0.129 4.129 23 C -0.132 4.132 24 C -0.115 4.115 25 C 0.055 3.945 26 F -0.116 7.116 27 C -0.122 4.122 28 C -0.099 4.099 29 C -0.007 4.007 30 O -0.092 6.092 31 C -0.176 4.176 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.245 0.755 38 H 0.204 0.796 39 H 0.180 0.820 40 H 0.199 0.801 41 H 0.185 0.815 42 H 0.054 0.946 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.334 -10.228 -12.519 19.743 hybrid contribution 0.291 1.446 -0.062 1.477 sum 11.625 -8.781 -12.581 19.249 Atomic orbital electron populations 1.69836 1.06206 1.24892 1.58482 1.25415 0.96271 1.00362 1.03829 0.85177 0.77958 0.80030 0.76881 1.22133 1.22829 1.19242 1.19331 0.91494 0.83358 1.40251 0.89786 1.46742 1.06544 0.99763 1.80120 1.23402 0.86840 0.95076 0.90984 0.87631 1.22915 0.97239 0.97700 0.98879 1.22817 0.95289 0.98999 0.98647 1.23384 0.97679 0.84748 0.92335 0.87839 1.22647 0.87470 0.98955 0.87655 0.88354 1.45973 1.34236 1.36942 1.16482 1.16823 0.82256 0.81850 0.81000 1.90832 1.39693 1.33417 1.78875 1.21972 0.93721 0.94067 0.98394 1.22925 0.97222 1.00967 0.91749 1.19700 0.98290 0.98918 0.96320 1.20652 0.94924 1.00718 0.95229 1.17487 0.94982 0.99067 0.82963 1.91525 1.82485 1.94671 1.42876 1.21296 1.01413 0.97556 0.91895 1.20163 0.92533 0.99811 0.97345 1.20254 0.95588 0.99226 0.85585 1.84067 1.37500 1.49336 1.38300 1.23364 0.97177 0.98236 0.98824 0.94552 0.94607 0.90818 0.89544 0.92356 0.75528 0.79590 0.81967 0.80141 0.81490 0.94648 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.38 10.64 21.65 0.23 -54.15 16 2 C -0.07 -3.56 5.47 84.86 0.46 -3.09 16 3 Si 0.97 44.30 29.56 68.60 2.03 46.33 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.22 -11.13 10.56 84.03 0.89 -10.24 16 8 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 9 N -0.61 -28.18 2.98 -615.25 -1.84 -30.02 16 10 C 0.14 6.44 4.67 46.23 0.22 6.65 16 11 H 0.11 5.66 5.73 -2.39 -0.01 5.65 16 12 C -0.13 -4.84 6.44 32.21 0.21 -4.64 16 13 C -0.12 -3.86 6.44 32.21 0.21 -3.65 16 14 C 0.13 4.52 5.04 46.23 0.23 4.75 16 15 H 0.10 3.43 8.14 -2.38 -0.02 3.41 16 16 C 0.14 4.74 2.73 46.61 0.13 4.87 16 17 H 0.10 3.14 7.36 -2.38 -0.02 3.12 16 18 N -0.69 -22.86 5.09 -438.60 -2.23 -25.09 16 19 C 0.59 19.48 7.79 86.53 0.67 20.15 16 20 O -0.55 -19.96 16.54 -4.20 -0.07 -20.03 16 21 C -0.03 -0.91 7.07 24.00 0.17 -0.74 16 22 C -0.11 -2.63 10.81 23.79 0.26 -2.37 16 23 C -0.13 -2.91 6.38 -20.24 -0.13 -3.04 16 24 C -0.10 -1.70 10.08 22.53 0.23 -1.47 16 25 C 0.07 1.22 7.29 22.36 0.16 1.39 16 26 F -0.14 -2.32 17.26 44.97 0.78 -1.55 16 27 C -0.10 -1.41 9.99 22.35 0.22 -1.19 16 28 C -0.08 -1.35 10.06 22.34 0.22 -1.13 16 29 C 0.04 0.98 7.40 23.05 0.17 1.15 16 30 O -0.19 -5.33 10.28 -13.59 -0.14 -5.47 16 31 C -0.14 -5.28 6.22 32.21 0.20 -5.08 16 32 H 0.24 13.92 8.31 -92.70 -0.77 13.15 16 33 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 2.38 7.82 -2.39 -0.02 2.37 16 35 H 0.09 2.28 7.82 -2.39 -0.02 2.26 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.41 13.65 8.34 -92.71 -0.77 12.88 16 38 H 0.19 3.82 8.06 -2.91 -0.02 3.80 16 39 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 41 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.03 1.52 7.98 -2.39 -0.02 1.50 16 43 H 0.07 2.63 7.82 -2.38 -0.02 2.61 16 Total: -1.00 -64.52 363.81 3.58 -60.94 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.30 Total: 26.74 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 4.52 Total: 2.30 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -3.84 Total: -109.26 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.21 Total: -25.50 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.55 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -64.52 3.58 -60.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097961973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.465 kcal (2) G-P(sol) polarization free energy of solvation -64.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds