Wall clock time and date at job start Wed Apr 1 2020 03:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99887 * 2 1 4 4 O 1.20831 * 120.00225 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99717 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46864 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47035 * 180.02562 * 6 5 3 8 8 C 1.36865 * 120.00385 * 264.53860 * 7 6 5 9 9 H 1.07997 * 120.00201 * 131.45212 * 8 7 6 10 10 C 1.39031 * 119.99484 * 311.46006 * 8 7 6 11 11 N 1.31372 * 120.00311 * 3.60785 * 10 8 7 12 12 Si 1.86799 * 119.99954 * 183.61331 * 10 8 7 13 13 H 1.48501 * 109.47135 * 59.99195 * 12 10 8 14 14 H 1.48495 * 109.47330 * 179.97438 * 12 10 8 15 15 H 1.48510 * 109.46959 * 299.99597 * 12 10 8 16 16 C 1.34779 * 120.00208 * 84.53425 * 7 6 5 17 17 O 1.21654 * 119.99929 * 4.42567 * 16 7 6 18 18 C 1.47315 * 120.00171 * 184.41948 * 16 7 6 19 19 N 1.33739 * 119.37556 * 354.58429 * 18 16 7 20 20 C 1.30733 * 122.74243 * 180.02562 * 19 18 16 21 21 C 1.40901 * 120.45255 * 0.02562 * 20 19 18 22 22 C 1.40187 * 121.80285 * 179.72201 * 21 20 19 23 23 C 1.36339 * 119.58159 * 179.78114 * 22 21 20 24 24 C 1.39228 * 121.06076 * 0.51250 * 23 22 21 25 25 C 1.36379 * 120.92926 * 359.73790 * 24 23 22 26 26 C 1.40063 * 119.49701 * 359.97438 * 25 24 23 27 27 C 1.39329 * 119.37538 * 174.60239 * 18 16 7 28 28 O 1.35454 * 120.82855 * 0.02562 * 27 18 16 29 29 H 1.09007 * 109.46818 * 60.00134 * 1 2 3 30 30 H 1.08997 * 109.47174 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47299 * 300.00768 * 1 2 3 32 32 H 1.08998 * 109.47257 * 60.00111 * 5 3 2 33 33 H 1.09004 * 109.47121 * 299.99550 * 5 3 2 34 34 H 1.08998 * 109.47020 * 60.00055 * 6 5 3 35 35 H 1.09004 * 109.46957 * 299.99740 * 6 5 3 36 36 H 0.97005 * 120.00078 * 180.02562 * 11 10 8 37 37 H 1.07999 * 119.77407 * 179.97438 * 20 19 18 38 38 H 1.07997 * 120.20928 * 0.03181 * 22 21 20 39 39 H 1.08003 * 119.47039 * 180.25421 * 23 22 21 40 40 H 1.07999 * 119.53740 * 179.76302 * 24 23 22 41 41 H 1.07996 * 120.25029 * 180.02562 * 25 24 23 42 42 H 0.96700 * 114.00538 * 89.99421 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4631 2.8188 -0.0002 8 6 6.1407 2.9679 1.1795 9 1 6.9815 2.3283 1.4039 10 6 5.7463 3.9425 2.0892 11 7 4.6810 4.6728 1.8489 12 14 6.7314 4.2139 3.6529 13 1 8.1235 4.5932 3.3015 14 1 6.1080 5.3022 4.4481 15 1 6.7461 2.9623 4.4522 16 6 6.1419 2.7424 -1.1621 17 8 5.5382 2.6909 -2.2170 18 6 7.6149 2.7214 -1.1546 19 7 8.2675 2.8883 0.0008 20 6 9.5722 2.8818 0.0832 21 6 10.3597 2.6947 -1.0701 22 6 11.7605 2.6885 -1.0152 23 6 12.4781 2.4991 -2.1589 24 6 11.8423 2.3219 -3.3848 25 6 10.4816 2.3275 -3.4760 26 6 9.7136 2.5136 -2.3195 27 6 8.3018 2.5285 -2.3514 28 8 7.6321 2.3613 -3.5169 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.9564 0.7805 -0.8891 33 1 3.9557 0.7809 0.8909 34 1 3.6100 3.2368 0.8893 35 1 3.6108 3.2356 -0.8907 36 1 4.4061 5.3531 2.4835 37 1 10.0497 3.0215 1.0418 38 1 12.2680 2.8288 -0.0723 39 1 13.5571 2.4905 -2.1139 40 1 12.4350 2.1777 -4.2760 41 1 9.9998 2.1886 -4.4325 42 1 7.4510 3.1860 -3.9884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152128373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:14 Heat of formation + Delta-G solvation = -83.136055 kcal Electronic energy + Delta-G solvation = -29937.595629 eV Core-core repulsion = 25656.214999 eV Total energy + Delta-G solvation = -4281.380629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70519 -39.99253 -38.60941 -37.17309 -36.58344 -36.08931 -34.79555 -31.94173 -31.78020 -31.21804 -30.31179 -28.94589 -27.46029 -24.97186 -24.63928 -23.74123 -22.75753 -21.84850 -20.42620 -19.52993 -18.39091 -18.06933 -17.43163 -17.02219 -16.44121 -16.17549 -16.10792 -15.65543 -15.32905 -14.86588 -14.53647 -14.31404 -14.06475 -13.87648 -13.63508 -13.51353 -13.39678 -13.16007 -12.85371 -12.47038 -12.15708 -12.03742 -11.93438 -11.72426 -11.53826 -11.35036 -11.10466 -10.98657 -10.86958 -10.63567 -10.49877 -10.34648 -10.02427 -9.96360 -9.71356 -9.15614 -8.91865 -8.87790 -8.28122 -7.73343 -7.31422 -6.24516 -4.01705 0.47215 0.99687 1.99116 2.71972 3.01437 3.11485 3.22461 3.26937 3.29247 3.91682 4.12536 4.29161 4.47791 4.65736 4.79639 4.83795 4.94533 4.95893 5.14105 5.23005 5.27157 5.30901 5.34212 5.37477 5.51314 5.67367 5.78460 5.87315 5.88485 5.90683 6.01220 6.13620 6.29804 6.33000 6.42478 6.54953 6.74817 6.79449 6.88940 6.99152 7.42952 7.70561 7.97525 7.98496 8.23593 8.40613 8.57900 9.14057 9.42885 9.87278 10.75291 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.003752 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.351367 B = 7460.323189 C = 9344.793821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.125 4.125 6 C 0.123 3.877 7 N -0.414 5.414 8 C -0.301 4.301 9 H 0.113 0.887 10 C 0.040 3.960 11 N -0.872 5.872 12 Si 0.923 3.077 13 H -0.270 1.270 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.512 3.488 17 O -0.586 6.586 18 C 0.069 3.931 19 N -0.390 5.390 20 C 0.109 3.891 21 C -0.095 4.095 22 C -0.091 4.091 23 C -0.123 4.123 24 C -0.114 4.114 25 C -0.097 4.097 26 C -0.060 4.060 27 C 0.112 3.888 28 O -0.465 6.465 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.063 0.937 36 H 0.270 0.730 37 H 0.161 0.839 38 H 0.132 0.868 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.131 0.869 42 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.949 -5.478 -4.057 11.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.310 3.690 4 O -0.391 6.391 5 C -0.164 4.164 6 C -0.001 4.001 7 N -0.130 5.130 8 C -0.430 4.430 9 H 0.130 0.870 10 C -0.165 4.165 11 N -0.510 5.510 12 Si 0.749 3.251 13 H -0.195 1.195 14 H -0.213 1.213 15 H -0.199 1.199 16 C 0.301 3.699 17 O -0.471 6.471 18 C -0.058 4.058 19 N -0.100 5.100 20 C -0.065 4.065 21 C -0.097 4.097 22 C -0.110 4.110 23 C -0.142 4.142 24 C -0.133 4.133 25 C -0.115 4.115 26 C -0.065 4.065 27 C 0.062 3.938 28 O -0.274 6.274 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.178 0.822 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.149 0.851 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 7.593 -5.510 -3.670 10.074 hybrid contribution 0.807 0.651 -0.025 1.037 sum 8.400 -4.859 -3.695 10.384 Atomic orbital electron populations 1.23160 0.77431 1.02972 1.02323 1.86542 1.22700 1.34475 1.84703 1.24040 0.92333 0.80865 0.71740 1.90654 1.67235 1.36188 1.44985 1.21918 0.85959 1.03447 1.05081 1.21429 0.82048 0.90641 1.05962 1.43355 1.04510 1.59812 1.05368 1.19914 1.12888 1.16466 0.93692 0.87004 1.25609 0.96001 0.94965 0.99906 1.69699 1.22945 1.21418 1.36897 0.86077 0.80189 0.77942 0.80865 1.19483 1.21349 1.19929 1.17931 0.85059 0.82393 0.84506 1.90676 1.68695 1.56730 1.31006 1.21784 0.95986 0.99737 0.88275 1.68725 1.08419 1.07391 1.25420 1.23520 0.89957 0.95892 0.97085 1.19177 0.94815 1.01901 0.93854 1.20986 0.92305 0.98809 0.98948 1.20872 0.99973 1.00620 0.92700 1.20885 0.94515 1.00084 0.97857 1.20885 0.93808 0.99153 0.97649 1.18492 0.92769 1.01069 0.94162 1.19360 0.88471 0.98642 0.87332 1.84646 1.75951 1.34653 1.32109 0.92207 0.88676 0.92163 0.88588 0.87820 0.85455 0.91868 0.91946 0.82175 0.85058 0.85992 0.85961 0.85093 0.75251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -6.17 10.57 -39.25 -0.41 -6.58 16 3 C 0.47 9.22 7.96 36.01 0.29 9.51 16 4 O -0.50 -11.21 15.73 -18.75 -0.30 -11.50 16 5 C -0.13 -2.57 6.10 -27.88 -0.17 -2.74 16 6 C 0.12 3.00 4.17 -4.04 -0.02 2.98 16 7 N -0.41 -10.45 2.51 -116.07 -0.29 -10.74 16 8 C -0.30 -7.51 7.40 -15.01 -0.11 -7.62 16 9 H 0.11 2.72 5.99 -52.49 -0.31 2.41 16 10 C 0.04 1.01 5.35 -17.45 -0.09 0.91 16 11 N -0.87 -23.35 11.01 55.50 0.61 -22.74 16 12 Si 0.92 19.66 29.55 -169.99 -5.02 14.64 16 13 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 14 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 16 C 0.51 12.74 7.55 -12.57 -0.09 12.65 16 17 O -0.59 -15.23 14.75 -16.90 -0.25 -15.48 16 18 C 0.07 1.51 6.67 -82.94 -0.55 0.96 16 19 N -0.39 -8.08 6.23 -9.40 -0.06 -8.13 16 20 C 0.11 1.80 11.02 -17.01 -0.19 1.61 16 21 C -0.09 -1.42 5.75 -106.79 -0.61 -2.04 16 22 C -0.09 -1.04 9.79 -39.53 -0.39 -1.43 16 23 C -0.12 -1.27 9.95 -39.90 -0.40 -1.66 16 24 C -0.11 -1.23 9.96 -39.88 -0.40 -1.63 16 25 C -0.10 -1.27 9.61 -39.57 -0.38 -1.65 16 26 C -0.06 -0.96 5.75 -106.71 -0.61 -1.58 16 27 C 0.11 2.12 6.75 -38.04 -0.26 1.86 16 28 O -0.46 -8.40 10.89 -40.19 -0.44 -8.84 16 29 H 0.06 0.75 8.13 -51.92 -0.42 0.33 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 32 H 0.10 1.95 8.14 -51.93 -0.42 1.52 16 33 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 34 H 0.13 3.38 5.51 -51.93 -0.29 3.09 16 35 H 0.06 1.65 7.49 -51.93 -0.39 1.26 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 41 H 0.13 1.54 7.71 -52.49 -0.40 1.13 16 42 H 0.39 5.65 9.06 45.56 0.41 6.07 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -32.79 363.86 -7.51 -40.30 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -3.92 Total: 11.94 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: -2.92 Total: 11.65 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.26 Total: -41.61 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.40 Total: -42.40 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.79 -7.51 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152128373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.835 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds