Wall clock time and date at job start Wed Apr 1 2020 02:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47428 * 2 1 4 4 C 1.33964 * 118.59607 * 264.97857 * 3 2 1 5 5 C 1.37998 * 122.16903 * 179.97438 * 4 3 2 6 6 C 1.47032 * 120.54601 * 180.02562 * 5 4 3 7 7 O 1.21678 * 119.99575 * 126.02543 * 6 5 4 8 8 N 1.34773 * 119.99822 * 306.03310 * 6 5 4 9 9 C 1.46498 * 120.00520 * 3.66914 * 8 6 5 10 10 C 1.36960 * 119.99487 * 183.67231 * 8 6 5 11 11 H 1.08003 * 120.00288 * 7.79642 * 10 8 6 12 12 C 1.38986 * 120.00074 * 187.79282 * 10 8 6 13 13 N 1.31408 * 119.99410 * 7.90036 * 12 10 8 14 14 Si 1.86793 * 120.00292 * 187.90299 * 12 10 8 15 15 H 1.48500 * 109.47256 * 89.99613 * 14 12 10 16 16 H 1.48497 * 109.47238 * 210.00190 * 14 12 10 17 17 H 1.48503 * 109.46912 * 329.99994 * 14 12 10 18 18 C 1.47200 * 118.90602 * 0.03910 * 5 4 3 19 19 O 1.21895 * 121.38969 * 180.02562 * 18 5 4 20 20 C 1.47272 * 117.22600 * 0.04647 * 18 5 4 21 21 C 1.39681 * 121.06217 * 179.87934 * 20 18 5 22 22 C 1.37840 * 119.71659 * 180.02562 * 21 20 18 23 23 C 1.40003 * 120.14220 * 359.94247 * 22 21 20 24 24 C 1.38263 * 120.39927 * 0.06375 * 23 22 21 25 25 C 1.37931 * 118.60929 * 84.99527 * 3 2 1 26 26 O 1.36430 * 108.45893 * 180.02562 * 23 22 21 27 27 C 1.43945 * 105.57254 * 342.60886 * 26 23 22 28 28 O 1.36566 * 131.31498 * 179.97438 * 22 21 20 29 29 H 1.08998 * 109.46965 * 60.00608 * 1 2 3 30 30 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46915 * 300.00763 * 1 2 3 32 32 H 1.08999 * 109.47656 * 239.99174 * 2 1 3 33 33 H 1.09003 * 109.47333 * 119.99669 * 2 1 3 34 34 H 1.07996 * 118.91740 * 359.95664 * 4 3 2 35 35 H 1.09001 * 109.46786 * 354.13013 * 9 8 6 36 36 H 1.09002 * 109.46988 * 114.13117 * 9 8 6 37 37 H 1.08998 * 109.47031 * 234.13357 * 9 8 6 38 38 H 0.97001 * 119.99540 * 179.97438 * 13 12 10 39 39 H 1.08007 * 120.13823 * 0.02562 * 21 20 18 40 40 H 1.08000 * 119.93830 * 180.25912 * 24 23 22 41 41 H 1.08994 * 110.55158 * 268.76248 * 27 26 23 42 42 H 1.09003 * 110.67332 * 146.00599 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3292 1.9514 -1.1717 5 6 2.7950 3.2476 -1.2574 6 6 3.1250 3.8383 -2.5628 7 8 2.6217 4.8944 -2.8973 8 7 3.9846 3.2098 -3.3889 9 6 4.5282 1.8998 -3.0218 10 6 4.3501 3.7959 -4.5715 11 1 4.0519 4.8116 -4.7857 12 6 5.1048 3.0836 -5.4961 13 7 5.3363 1.8037 -5.3087 14 14 5.7902 3.9456 -7.0048 15 1 7.1373 4.4887 -6.6955 16 1 5.8924 2.9762 -8.1251 17 1 4.8856 5.0574 -7.3933 18 6 2.9564 4.0289 -0.0204 19 8 3.3637 5.1776 -0.0436 20 6 2.6055 3.3650 1.2465 21 6 2.7304 4.0310 2.4679 22 6 2.3946 3.3828 3.6371 23 6 1.9293 2.0629 3.6005 24 6 1.8038 1.3985 2.3945 25 6 2.1390 2.0391 1.2063 26 8 1.6704 1.6605 4.8781 27 6 2.3660 2.5933 5.7255 28 8 2.4235 3.7971 4.9381 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.2117 1.3777 -2.0791 35 1 4.2097 1.6446 -2.0111 36 1 4.1623 1.1463 -3.7193 37 1 5.6169 1.9340 -3.0620 38 1 5.8627 1.3065 -5.9541 39 1 3.0884 5.0496 2.4960 40 1 1.4401 0.3817 2.3745 41 1 3.3703 2.2328 5.9478 42 1 1.8095 2.7651 6.6469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152722542.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:22 Heat of formation + Delta-G solvation = -75.873702 kcal Electronic energy + Delta-G solvation = -30286.376352 eV Core-core repulsion = 26005.310642 eV Total energy + Delta-G solvation = -4281.065710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.37341 -42.09506 -40.21004 -39.29357 -37.55074 -37.40430 -36.62597 -34.60470 -33.42966 -31.90108 -31.31984 -30.31945 -28.26753 -27.06626 -26.67829 -25.04691 -24.94609 -24.77099 -22.47656 -21.95148 -20.38409 -19.56688 -19.01038 -18.71382 -18.26053 -17.86182 -17.33473 -17.22497 -16.76971 -16.47365 -16.27041 -15.87812 -15.74246 -15.64235 -15.48487 -15.17145 -14.94796 -14.81800 -14.50904 -14.30998 -14.17950 -14.07355 -13.70423 -13.57149 -13.39399 -13.04149 -12.85733 -12.77606 -12.54157 -12.35990 -12.31643 -12.12058 -12.01865 -11.55817 -11.06151 -10.93421 -10.41375 -10.30867 -9.84910 -9.51219 -8.64916 -8.26289 -5.89933 -0.55773 -0.42150 0.50480 1.22598 1.33774 1.40887 1.50120 1.53750 1.84064 2.08319 2.27588 2.36818 2.65086 2.92331 3.16589 3.17941 3.29848 3.40872 3.60965 3.65138 3.89965 3.97587 4.04164 4.16500 4.20263 4.24886 4.33555 4.49716 4.51418 4.56737 4.62791 4.73762 4.80956 4.89226 4.91959 4.95661 5.15302 5.17958 5.37371 5.43923 5.49690 5.66949 5.78188 5.94273 6.06282 6.51132 6.78046 7.17835 7.46819 8.06280 8.66263 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.003075 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.725805 B = 9103.693263 C = 9975.441007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 N -0.468 5.468 4 C 0.235 3.765 5 C -0.336 4.336 6 C 0.496 3.504 7 O -0.641 6.641 8 N -0.455 5.455 9 C 0.120 3.880 10 C -0.342 4.342 11 H 0.068 0.932 12 C 0.002 3.998 13 N -0.889 5.889 14 Si 0.991 3.009 15 H -0.273 1.273 16 H -0.261 1.261 17 H -0.280 1.280 18 C 0.420 3.580 19 O -0.537 6.537 20 C -0.195 4.195 21 C -0.032 4.032 22 C -0.007 4.007 23 C 0.106 3.894 24 C -0.136 4.136 25 C 0.210 3.790 26 O -0.301 6.301 27 C 0.202 3.798 28 O -0.321 6.321 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.194 0.806 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.275 0.725 39 H 0.133 0.867 40 H 0.193 0.807 41 H 0.111 0.889 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 -16.642 21.222 28.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.047 4.047 3 N -0.155 5.155 4 C 0.102 3.898 5 C -0.348 4.348 6 C 0.286 3.714 7 O -0.529 6.529 8 N -0.172 5.172 9 C -0.022 4.022 10 C -0.470 4.470 11 H 0.086 0.914 12 C -0.200 4.200 13 N -0.529 5.529 14 Si 0.814 3.186 15 H -0.198 1.198 16 H -0.185 1.185 17 H -0.205 1.205 18 C 0.309 3.691 19 O -0.422 6.422 20 C -0.199 4.199 21 C -0.051 4.051 22 C -0.052 4.052 23 C 0.059 3.941 24 C -0.157 4.157 25 C 0.107 3.893 26 O -0.217 6.217 27 C 0.092 3.908 28 O -0.238 6.238 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.211 0.789 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.151 0.849 40 H 0.210 0.790 41 H 0.129 0.871 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.713 -15.914 21.159 27.577 hybrid contribution 0.646 1.376 -0.879 1.756 sum -7.066 -14.538 20.280 25.934 Atomic orbital electron populations 1.22279 0.93342 1.04990 1.02807 1.22806 0.96572 0.76887 1.08476 1.43243 1.54958 1.15458 1.01819 1.22097 0.86338 0.91345 0.90040 1.21586 1.21466 0.97227 0.94484 1.17761 0.82682 0.85991 0.84969 1.90556 1.57785 1.27065 1.77535 1.43825 1.37660 1.18679 1.17057 1.21877 0.98401 0.84113 0.97788 1.19685 1.33373 0.98797 0.95135 0.91437 1.25971 0.96552 0.96269 1.01195 1.70117 1.38658 1.06771 1.37305 0.84977 0.78315 0.78017 0.77259 1.19817 1.18540 1.20484 1.19834 0.75243 0.86325 0.87729 1.90651 1.42406 1.19925 1.89185 1.19673 1.11209 0.95152 0.93884 1.19673 0.97303 1.00555 0.87597 1.19475 1.06111 0.93680 0.85912 1.19647 0.96047 0.91348 0.87081 1.19594 1.08430 1.02507 0.85142 1.17312 0.95939 0.89694 0.86312 1.87344 1.69156 1.52553 1.12603 1.26279 1.00026 0.72494 0.91988 1.87405 1.90987 1.32237 1.13180 0.92972 0.87408 0.91997 0.85580 0.85203 0.78920 0.92071 0.90004 0.94485 0.91476 0.84911 0.79030 0.87139 0.81340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 10.06 71.98 0.72 -0.62 16 2 C 0.07 0.57 5.63 86.38 0.49 1.06 16 3 N -0.47 -9.38 2.63 -514.93 -1.35 -10.74 16 4 C 0.24 6.84 7.56 84.31 0.64 7.48 16 5 C -0.34 -14.79 5.03 -18.67 -0.09 -14.89 16 6 C 0.50 28.18 6.90 86.55 0.60 28.78 16 7 O -0.64 -43.22 16.56 -4.28 -0.07 -43.30 16 8 N -0.45 -25.30 3.02 -663.04 -2.00 -27.31 16 9 C 0.12 5.39 7.93 127.77 1.01 6.40 16 10 C -0.34 -20.70 9.53 84.07 0.80 -19.90 16 11 H 0.07 4.48 7.21 -2.91 -0.02 4.46 16 12 C 0.00 0.09 5.38 84.94 0.46 0.54 16 13 N -0.89 -45.53 9.67 21.67 0.21 -45.32 16 14 Si 0.99 43.77 29.56 68.60 2.03 45.80 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 C 0.42 19.10 7.14 27.00 0.19 19.29 16 19 O -0.54 -29.80 16.87 -4.97 -0.08 -29.88 16 20 C -0.19 -6.47 5.89 -19.97 -0.12 -6.58 16 21 C -0.03 -0.98 9.66 22.52 0.22 -0.76 16 22 C -0.01 -0.17 7.13 22.60 0.16 -0.01 16 23 C 0.11 2.00 7.14 22.70 0.16 2.16 16 24 C -0.14 -2.18 8.68 22.48 0.20 -1.98 16 25 C 0.21 4.87 6.49 38.97 0.25 5.13 16 26 O -0.30 -4.54 11.39 -75.23 -0.86 -5.39 16 27 C 0.20 2.22 8.88 113.37 1.01 3.22 16 28 O -0.32 -6.77 11.41 -76.84 -0.88 -7.64 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.55 7.55 -2.39 -0.02 0.53 16 32 H 0.13 0.60 7.83 -2.39 -0.02 0.58 16 33 H 0.13 0.29 6.33 -2.39 -0.02 0.27 16 34 H 0.19 4.74 7.09 -2.91 -0.02 4.72 16 35 H 0.06 2.21 4.61 -2.39 -0.01 2.20 16 36 H 0.08 3.60 6.74 -2.39 -0.02 3.59 16 37 H 0.04 1.78 7.43 -2.39 -0.02 1.76 16 38 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 39 H 0.13 4.46 7.77 -2.91 -0.02 4.43 16 40 H 0.19 1.36 5.91 -2.91 -0.02 1.35 16 41 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.17 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -93.99 350.80 4.78 -89.21 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.09 Total: 5.25 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: 6.69 Total: 29.33 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -3.15 Total: -83.36 kcal Atomic # 8 Polarization: -84.33 SS G_CDS: -1.89 Total: -86.22 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -93.99 4.78 -89.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152722542.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.334 kcal (2) G-P(sol) polarization free energy of solvation -93.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds