Wall clock time and date at job start Wed Apr 1 2020 02:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20786 * 119.99560 * 2 1 4 4 C 1.48991 * 120.00477 * 180.02562 * 2 1 3 5 5 O 1.21294 * 119.99837 * 359.97438 * 4 2 1 6 6 O 1.34613 * 120.00293 * 179.97438 * 4 2 1 7 7 C 1.35670 * 116.99922 * 184.98661 * 6 4 2 8 8 C 1.38712 * 120.14718 * 94.71585 * 7 6 4 9 9 C 1.38081 * 120.08320 * 180.02562 * 8 7 6 10 10 C 1.38524 * 120.37933 * 359.95932 * 9 8 7 11 11 C 1.37836 * 120.30284 * 0.02562 * 10 9 8 12 12 C 1.39659 * 119.91196 * 0.02562 * 11 10 9 13 13 C 1.47584 * 120.18815 * 179.97438 * 12 11 10 14 14 O 1.21581 * 119.99760 * 124.32633 * 13 12 11 15 15 N 1.34775 * 120.00001 * 304.32513 * 13 12 11 16 16 C 1.46496 * 120.00125 * 354.59478 * 15 13 12 17 17 C 1.50699 * 109.47349 * 89.99765 * 16 15 13 18 18 H 1.07994 * 119.99736 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99755 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00123 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46703 * 89.99992 * 21 19 17 23 23 H 1.48503 * 109.46977 * 209.99888 * 21 19 17 24 24 H 1.48497 * 109.47236 * 330.00068 * 21 19 17 25 25 C 1.46503 * 119.99873 * 174.59764 * 15 13 12 26 26 C 1.52990 * 109.47492 * 94.93187 * 25 15 13 27 27 C 1.47196 * 109.47315 * 179.97438 * 26 25 15 28 28 N 7.10151 * 85.68614 * 102.79140 * 2 1 3 29 29 H 1.08996 * 109.47109 * 239.99583 * 1 2 3 30 30 H 1.09001 * 109.47575 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47081 * 119.99893 * 1 2 3 32 32 H 1.08003 * 119.95872 * 0.02562 * 8 7 6 33 33 H 1.07995 * 119.80899 * 179.97438 * 9 8 7 34 34 H 1.08002 * 119.84644 * 180.02562 * 10 9 8 35 35 H 1.08003 * 120.03798 * 179.72416 * 11 10 9 36 36 H 1.09002 * 109.47418 * 209.99981 * 16 15 13 37 37 H 1.09009 * 109.47303 * 329.99921 * 16 15 13 38 38 H 0.96992 * 119.99741 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.46474 * 214.93852 * 25 15 13 40 40 H 1.09002 * 109.47013 * 334.93068 * 25 15 13 41 41 H 1.09002 * 109.47485 * 300.00563 * 26 25 15 42 42 H 1.09002 * 109.47088 * 59.99927 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0461 0.0000 4 6 2.2520 -1.2902 -0.0006 5 8 1.6456 -2.3407 -0.0006 6 8 3.5982 -1.2902 -0.0011 7 6 4.2141 -2.4944 -0.1067 8 6 4.6177 -2.9640 -1.3479 9 6 5.2440 -4.1900 -1.4539 10 6 5.4746 -4.9588 -0.3249 11 6 5.0803 -4.5074 0.9163 12 6 4.4449 -3.2697 1.0377 13 6 4.0197 -2.7807 2.3637 14 8 4.4036 -1.6989 2.7644 15 7 3.2059 -3.5332 3.1303 16 6 2.6481 -4.7805 2.6016 17 6 3.5820 -5.9210 2.9150 18 1 4.4990 -5.7354 3.4543 19 6 3.2651 -7.2015 2.5139 20 7 4.0799 -8.1969 2.7878 21 14 1.6786 -7.5226 1.5816 22 1 1.9269 -7.3937 0.1231 23 1 1.1968 -8.8947 1.8824 24 1 0.6511 -6.5347 1.9980 25 6 2.8789 -3.1040 4.4924 26 6 1.5566 -2.3346 4.4811 27 6 1.2279 -1.9038 5.8497 28 7 0.9728 -1.5678 6.9056 29 1 -0.3633 -0.5139 0.8899 30 1 -0.3634 1.0276 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 4.4420 -2.3699 -2.2326 33 1 5.5561 -4.5515 -2.4225 34 1 5.9655 -5.9163 -0.4177 35 1 5.2582 -5.1123 1.7932 36 1 1.6780 -4.9684 3.0616 37 1 2.5278 -4.6957 1.5215 38 1 3.8572 -9.0977 2.5054 39 1 2.7851 -3.9786 5.1361 40 1 3.6718 -2.4583 4.8700 41 1 1.6505 -1.4601 3.8372 42 1 0.7638 -2.9802 4.1034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193394778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:10 Heat of formation + Delta-G solvation = -71.176767 kcal Electronic energy + Delta-G solvation = -30939.539577 eV Core-core repulsion = 26658.677541 eV Total energy + Delta-G solvation = -4280.862036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56655 -39.97206 -39.19175 -38.04025 -36.82575 -36.71060 -35.38544 -33.01289 -31.84693 -30.81953 -30.40042 -30.12398 -28.00367 -25.96383 -24.69841 -23.04513 -22.59611 -22.14508 -20.40783 -19.09394 -18.29169 -17.74836 -17.63587 -17.04906 -16.84888 -16.78846 -16.00414 -15.67505 -15.39858 -15.08401 -14.76784 -14.63101 -14.25141 -14.12846 -13.88156 -13.75623 -13.39260 -13.04258 -12.87045 -12.69165 -12.61329 -12.44041 -12.36501 -12.33061 -12.03679 -11.87518 -11.83793 -11.70881 -11.46433 -11.17713 -10.83031 -10.75924 -10.69975 -10.37359 -10.19398 -9.72651 -9.45332 -8.84184 -8.63309 -8.55991 -8.06634 -6.36091 -4.37040 0.52734 1.05355 1.47177 2.31736 2.48063 2.72634 2.84567 3.08542 3.12435 3.19671 3.23333 3.46247 3.92171 4.16940 4.17712 4.21934 4.37333 4.87989 4.93599 4.95492 5.00817 5.05578 5.14538 5.18968 5.33194 5.47869 5.51287 5.51727 5.64518 5.73984 5.89235 6.11744 6.13960 6.27045 6.29759 6.42216 6.53714 6.60000 6.70268 6.79365 7.08605 7.12615 7.29002 7.60944 7.61126 7.82568 8.20370 8.57183 8.65596 9.22593 10.74689 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.007721 B = 0.006011 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.807756 B = 4656.933890 C = 6551.122790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.376 3.624 3 O -0.390 6.390 4 C 0.410 3.590 5 O -0.447 6.447 6 O -0.262 6.262 7 C 0.103 3.897 8 C -0.137 4.137 9 C -0.094 4.094 10 C -0.118 4.118 11 C -0.042 4.042 12 C -0.120 4.120 13 C 0.561 3.439 14 O -0.547 6.547 15 N -0.583 5.583 16 C 0.204 3.796 17 C -0.545 4.545 18 H 0.084 0.916 19 C 0.084 3.916 20 N -0.883 5.883 21 Si 0.865 3.135 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.263 1.263 25 C 0.124 3.876 26 C -0.046 4.046 27 C 0.219 3.781 28 N -0.444 5.444 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.173 0.827 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.268 0.732 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 8.990 -9.703 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.245 3.755 3 O -0.258 6.258 4 C 0.250 3.750 5 O -0.331 6.331 6 O -0.176 6.176 7 C 0.062 3.938 8 C -0.155 4.155 9 C -0.112 4.112 10 C -0.136 4.136 11 C -0.060 4.060 12 C -0.123 4.123 13 C 0.349 3.651 14 O -0.426 6.426 15 N -0.312 5.312 16 C 0.083 3.917 17 C -0.582 4.582 18 H 0.101 0.899 19 C -0.121 4.121 20 N -0.519 5.519 21 Si 0.692 3.308 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.187 1.187 25 C -0.001 4.001 26 C -0.087 4.087 27 C -0.099 4.099 28 N -0.122 5.122 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.191 0.809 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.030 10.070 -7.902 13.753 hybrid contribution -0.739 -0.921 -1.010 1.554 sum -5.769 9.149 -8.912 14.014 Atomic orbital electron populations 1.22143 0.89052 1.06110 1.06414 1.24168 0.92555 0.85641 0.73117 1.90515 1.71607 1.33420 1.30276 1.25106 0.82171 0.92695 0.75003 1.90884 1.68682 1.33236 1.40257 1.84739 1.19844 1.31176 1.81866 1.18469 0.97799 0.84603 0.92961 1.20959 1.02262 0.96984 0.95334 1.21124 0.97638 0.93325 0.99129 1.21300 0.99921 1.00194 0.92166 1.22169 0.91731 0.91517 1.00584 1.20043 1.03810 0.95693 0.92753 1.18175 0.78479 0.83838 0.84642 1.90761 1.56889 1.21261 1.73659 1.47839 1.46478 1.23826 1.13093 1.19964 0.95147 0.81232 0.95377 1.21299 1.07635 0.90638 1.38672 0.89856 1.24792 0.96416 0.95827 0.95082 1.69875 1.36510 1.00335 1.45223 0.86995 0.84445 0.78252 0.81158 1.19591 1.20910 1.18715 1.21207 0.94411 0.99700 0.84787 1.19750 1.01091 1.02445 0.85419 1.29045 0.93036 0.92971 0.94811 1.81239 1.09207 1.09607 1.12099 0.87373 0.88150 0.87496 0.85338 0.85286 0.84879 0.80947 0.94382 0.94328 0.92149 0.88729 0.89385 0.87716 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 9.90 36.00 0.36 -0.88 16 2 C 0.38 4.37 7.31 -29.85 -0.22 4.15 16 3 O -0.39 -5.47 17.68 -7.65 -0.14 -5.61 16 4 C 0.41 6.12 7.73 35.19 0.27 6.40 16 5 O -0.45 -7.20 16.43 -19.10 -0.31 -7.52 16 6 O -0.26 -4.51 9.17 -30.07 -0.28 -4.79 16 7 C 0.10 1.81 4.94 -38.69 -0.19 1.62 16 8 C -0.14 -2.00 9.98 -39.46 -0.39 -2.39 16 9 C -0.09 -1.28 10.03 -39.53 -0.40 -1.67 16 10 C -0.12 -1.84 10.02 -39.62 -0.40 -2.24 16 11 C -0.04 -0.78 7.88 -39.20 -0.31 -1.09 16 12 C -0.12 -2.28 4.43 -104.84 -0.46 -2.74 16 13 C 0.56 11.09 6.58 -12.45 -0.08 11.01 16 14 O -0.55 -11.73 16.38 3.79 0.06 -11.67 16 15 N -0.58 -10.73 2.46 -176.27 -0.43 -11.17 16 16 C 0.20 4.08 3.82 -5.20 -0.02 4.06 16 17 C -0.54 -12.57 7.01 -34.44 -0.24 -12.81 16 18 H 0.08 2.12 7.44 -52.49 -0.39 1.73 16 19 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.88 -23.20 13.96 55.43 0.77 -22.42 16 21 Si 0.87 18.64 27.47 -169.99 -4.67 13.97 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.26 -5.40 6.54 56.52 0.37 -5.03 16 25 C 0.12 1.92 5.38 -4.05 -0.02 1.90 16 26 C -0.05 -0.57 6.02 -29.53 -0.18 -0.75 16 27 C 0.22 3.04 15.44 -20.73 -0.32 2.72 16 28 N -0.44 -7.18 18.54 42.20 0.78 -6.39 16 29 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.53 8.12 -51.93 -0.42 0.10 16 31 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.17 3.54 5.14 -52.48 -0.27 3.27 16 36 H 0.04 0.74 7.13 -51.93 -0.37 0.37 16 37 H 0.04 0.82 6.19 -51.92 -0.32 0.49 16 38 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.09 1.44 8.11 -51.93 -0.42 1.01 16 40 H 0.09 1.40 7.35 -51.93 -0.38 1.02 16 41 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -31.17 379.32 -5.90 -37.07 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.70 Total: 3.59 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -2.70 Total: 9.22 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 1.12 Total: -39.98 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.66 Total: -29.58 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.67 Total: 13.97 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.17 -5.90 -37.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193394778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.108 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds