Wall clock time and date at job start Wed Apr 1 2020 02:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20786 * 119.99560 * 2 1 4 4 C 1.48991 * 120.00477 * 180.02562 * 2 1 3 5 5 O 1.21294 * 119.99837 * 359.97438 * 4 2 1 6 6 O 1.34613 * 120.00293 * 179.97438 * 4 2 1 7 7 C 1.35670 * 116.99922 * 184.98661 * 6 4 2 8 8 C 1.38712 * 120.14718 * 94.71585 * 7 6 4 9 9 C 1.38081 * 120.08320 * 180.02562 * 8 7 6 10 10 C 1.38524 * 120.37933 * 359.95932 * 9 8 7 11 11 C 1.37836 * 120.30284 * 0.02562 * 10 9 8 12 12 C 1.39659 * 119.91196 * 0.02562 * 11 10 9 13 13 C 1.47584 * 120.18815 * 179.97438 * 12 11 10 14 14 O 1.21581 * 119.99760 * 124.32633 * 13 12 11 15 15 N 1.34775 * 120.00001 * 304.32513 * 13 12 11 16 16 C 1.46496 * 120.00125 * 354.59478 * 15 13 12 17 17 C 1.50699 * 109.47349 * 89.99765 * 16 15 13 18 18 H 1.07994 * 119.99736 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00027 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99755 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00123 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46703 * 89.99992 * 21 19 17 23 23 H 1.48503 * 109.46977 * 209.99888 * 21 19 17 24 24 H 1.48497 * 109.47236 * 330.00068 * 21 19 17 25 25 C 1.46503 * 119.99873 * 174.59764 * 15 13 12 26 26 C 1.52990 * 109.47492 * 94.93187 * 25 15 13 27 27 C 1.47196 * 109.47315 * 179.97438 * 26 25 15 28 28 N 7.10151 * 85.68614 * 102.79140 * 2 1 3 29 29 H 1.08996 * 109.47109 * 239.99583 * 1 2 3 30 30 H 1.09001 * 109.47575 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47081 * 119.99893 * 1 2 3 32 32 H 1.08003 * 119.95872 * 0.02562 * 8 7 6 33 33 H 1.07995 * 119.80899 * 179.97438 * 9 8 7 34 34 H 1.08002 * 119.84644 * 180.02562 * 10 9 8 35 35 H 1.08003 * 120.03798 * 179.72416 * 11 10 9 36 36 H 1.09002 * 109.47418 * 209.99981 * 16 15 13 37 37 H 1.09009 * 109.47303 * 329.99921 * 16 15 13 38 38 H 0.96992 * 119.99741 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.46474 * 214.93852 * 25 15 13 40 40 H 1.09002 * 109.47013 * 334.93068 * 25 15 13 41 41 H 1.09002 * 109.47485 * 300.00563 * 26 25 15 42 42 H 1.09002 * 109.47088 * 59.99927 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0461 0.0000 4 6 2.2520 -1.2902 -0.0006 5 8 1.6456 -2.3407 -0.0006 6 8 3.5982 -1.2902 -0.0011 7 6 4.2141 -2.4944 -0.1067 8 6 4.6177 -2.9640 -1.3479 9 6 5.2440 -4.1900 -1.4539 10 6 5.4746 -4.9588 -0.3249 11 6 5.0803 -4.5074 0.9163 12 6 4.4449 -3.2697 1.0377 13 6 4.0197 -2.7807 2.3637 14 8 4.4036 -1.6989 2.7644 15 7 3.2059 -3.5332 3.1303 16 6 2.6481 -4.7805 2.6016 17 6 3.5820 -5.9210 2.9150 18 1 4.4990 -5.7354 3.4543 19 6 3.2651 -7.2015 2.5139 20 7 4.0799 -8.1969 2.7878 21 14 1.6786 -7.5226 1.5816 22 1 1.9269 -7.3937 0.1231 23 1 1.1968 -8.8947 1.8824 24 1 0.6511 -6.5347 1.9980 25 6 2.8789 -3.1040 4.4924 26 6 1.5566 -2.3346 4.4811 27 6 1.2279 -1.9038 5.8497 28 7 0.9728 -1.5678 6.9056 29 1 -0.3633 -0.5139 0.8899 30 1 -0.3634 1.0276 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 4.4420 -2.3699 -2.2326 33 1 5.5561 -4.5515 -2.4225 34 1 5.9655 -5.9163 -0.4177 35 1 5.2582 -5.1123 1.7932 36 1 1.6780 -4.9684 3.0616 37 1 2.5278 -4.6957 1.5215 38 1 3.8572 -9.0977 2.5054 39 1 2.7851 -3.9786 5.1361 40 1 3.6718 -2.4583 4.8700 41 1 1.6505 -1.4601 3.8372 42 1 0.7638 -2.9802 4.1034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193394778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:09 Heat of formation + Delta-G solvation = -88.194710 kcal Electronic energy + Delta-G solvation = -30940.277530 eV Core-core repulsion = 26658.677541 eV Total energy + Delta-G solvation = -4281.599989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.75596 -41.22977 -40.37046 -39.27174 -38.04351 -37.96915 -36.89357 -34.72221 -33.25261 -31.67838 -31.60700 -31.27652 -29.69555 -27.02577 -25.95038 -24.68711 -23.91631 -23.36352 -21.53134 -20.46798 -19.51671 -19.12430 -18.75690 -18.56350 -18.29581 -17.96431 -17.39182 -16.76044 -16.55609 -16.30681 -16.04360 -15.84246 -15.55045 -15.48852 -15.17415 -14.98325 -14.69539 -14.51656 -14.29597 -13.85052 -13.65942 -13.58775 -13.46139 -13.40289 -13.22997 -13.20438 -13.07268 -12.88461 -12.73027 -12.69699 -12.45416 -12.15519 -11.97561 -11.91457 -11.55009 -11.21946 -10.95156 -10.71267 -9.92746 -9.81618 -9.61578 -8.24425 -6.27681 -0.46600 -0.19351 0.22752 1.26805 1.41893 1.44346 1.46891 1.49998 1.52587 1.67432 1.71704 2.09683 2.38327 2.68556 3.03975 3.04586 3.11195 3.49855 3.61922 3.89837 3.98803 4.02201 4.14099 4.36611 4.41570 4.42751 4.47692 4.48551 4.56320 4.66440 4.72343 4.84326 4.93891 4.98059 5.03482 5.16627 5.21718 5.35386 5.47140 5.53207 5.58510 5.65106 5.89151 6.14682 6.44324 6.46534 6.48418 6.72152 7.07180 7.34728 8.89687 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.007721 B = 0.006011 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.807756 B = 4656.933890 C = 6551.122790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.388 3.612 3 O -0.421 6.421 4 C 0.403 3.597 5 O -0.460 6.460 6 O -0.280 6.280 7 C 0.089 3.911 8 C -0.133 4.133 9 C -0.075 4.075 10 C -0.125 4.125 11 C -0.061 4.061 12 C -0.148 4.148 13 C 0.559 3.441 14 O -0.572 6.572 15 N -0.581 5.581 16 C 0.215 3.785 17 C -0.528 4.528 18 H 0.046 0.954 19 C 0.039 3.961 20 N -0.930 5.930 21 Si 0.916 3.084 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.240 1.240 25 C 0.118 3.882 26 C -0.031 4.031 27 C 0.244 3.756 28 N -0.482 5.482 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.161 0.839 33 H 0.175 0.825 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.056 0.944 37 H 0.035 0.965 38 H 0.267 0.733 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 9.805 -12.126 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.259 3.741 3 O -0.290 6.290 4 C 0.244 3.756 5 O -0.344 6.344 6 O -0.194 6.194 7 C 0.048 3.952 8 C -0.151 4.151 9 C -0.093 4.093 10 C -0.142 4.142 11 C -0.079 4.079 12 C -0.151 4.151 13 C 0.347 3.653 14 O -0.454 6.454 15 N -0.310 5.310 16 C 0.094 3.906 17 C -0.566 4.566 18 H 0.064 0.936 19 C -0.162 4.162 20 N -0.569 5.569 21 Si 0.740 3.260 22 H -0.193 1.193 23 H -0.215 1.215 24 H -0.163 1.163 25 C -0.006 4.006 26 C -0.072 4.072 27 C -0.073 4.073 28 N -0.160 5.160 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.179 0.821 33 H 0.192 0.808 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.133 0.867 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.374 10.901 -10.309 16.717 hybrid contribution 0.108 -1.147 -0.285 1.187 sum -7.266 9.754 -10.594 16.129 Atomic orbital electron populations 1.22299 0.84602 1.08042 1.07868 1.24824 0.94053 0.83633 0.71636 1.90517 1.72435 1.33804 1.32264 1.26051 0.81369 0.94073 0.74141 1.90856 1.68595 1.34042 1.40941 1.84751 1.21369 1.31135 1.82158 1.18773 0.98255 0.84704 0.93514 1.21401 1.00944 0.97440 0.95293 1.21576 0.95347 0.92208 1.00129 1.21518 0.99828 1.01039 0.91861 1.21885 0.93590 0.91664 1.00791 1.20081 1.05516 0.96556 0.92977 1.18423 0.78130 0.83552 0.85168 1.90727 1.57866 1.22392 1.74392 1.47818 1.46185 1.23117 1.13890 1.19749 0.94894 0.80626 0.95333 1.21327 1.06639 0.91646 1.36987 0.93579 1.25423 0.99145 0.95592 0.96015 1.70004 1.38630 1.00774 1.47474 0.86169 0.81566 0.78243 0.79994 1.19336 1.21478 1.16320 1.21325 0.95897 1.00038 0.83369 1.19672 0.99870 1.02846 0.84813 1.29100 0.91883 0.91820 0.94535 1.81271 1.10555 1.11001 1.13178 0.85975 0.86076 0.85431 0.82149 0.80790 0.83683 0.84148 0.92577 0.94656 0.92328 0.88595 0.90330 0.86684 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.90 71.24 0.71 -1.03 16 2 C 0.39 8.21 7.31 28.57 0.21 8.42 16 3 O -0.42 -11.27 17.68 11.51 0.20 -11.07 16 4 C 0.40 11.42 7.73 70.71 0.55 11.96 16 5 O -0.46 -13.91 16.43 20.50 0.34 -13.57 16 6 O -0.28 -9.42 9.17 9.95 0.09 -9.33 16 7 C 0.09 3.05 4.94 22.85 0.11 3.16 16 8 C -0.13 -3.53 9.98 22.35 0.22 -3.31 16 9 C -0.07 -1.81 10.03 22.30 0.22 -1.59 16 10 C -0.12 -3.79 10.02 22.24 0.22 -3.57 16 11 C -0.06 -2.31 7.88 22.52 0.18 -2.13 16 12 C -0.15 -5.69 4.43 -20.01 -0.09 -5.78 16 13 C 0.56 22.51 6.58 86.71 0.57 23.08 16 14 O -0.57 -25.21 16.38 -2.53 -0.04 -25.25 16 15 N -0.58 -21.47 2.46 -829.87 -2.04 -23.51 16 16 C 0.22 8.50 3.82 85.63 0.33 8.83 16 17 C -0.53 -24.93 7.01 25.60 0.18 -24.75 16 18 H 0.05 2.49 7.44 -2.91 -0.02 2.47 16 19 C 0.04 1.91 5.47 84.65 0.46 2.37 16 20 N -0.93 -50.30 13.96 21.45 0.30 -50.00 16 21 Si 0.92 37.49 27.47 68.60 1.88 39.38 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.29 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.24 -8.86 6.54 99.48 0.65 -8.21 16 25 C 0.12 3.62 5.38 86.38 0.46 4.09 16 26 C -0.03 -0.72 6.02 28.78 0.17 -0.54 16 27 C 0.24 6.42 15.44 89.43 1.38 7.80 16 28 N -0.48 -15.17 18.54 20.02 0.37 -14.80 16 29 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.12 0.78 8.12 -2.39 -0.02 0.76 16 31 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 33 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.14 6.18 5.14 -2.91 -0.01 6.16 16 36 H 0.06 2.04 7.13 -2.39 -0.02 2.02 16 37 H 0.04 1.46 6.19 -2.38 -0.01 1.44 16 38 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 39 H 0.10 2.90 8.11 -2.39 -0.02 2.88 16 40 H 0.08 2.56 7.35 -2.39 -0.02 2.55 16 41 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -70.97 379.32 8.02 -62.95 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 1.02 Total: 18.18 kcal Atomic # 6 Polarization: 21.13 SS G_CDS: 5.89 Total: 27.02 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -1.37 Total: -88.31 kcal Atomic # 8 Polarization: -59.81 SS G_CDS: 0.59 Total: -59.22 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 1.88 Total: 39.38 kcal Total: -70.97 8.02 -62.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193394778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.242 kcal (2) G-P(sol) polarization free energy of solvation -70.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds