Wall clock time and date at job start Wed Apr 1 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47082 * 2 1 4 4 C 1.34775 * 116.99940 * 180.02562 * 3 2 1 5 5 O 1.21536 * 119.99955 * 0.02562 * 4 3 2 6 6 C 1.47181 * 120.00007 * 180.02562 * 4 3 2 7 7 C 1.39988 * 120.92802 * 0.22356 * 6 4 3 8 8 N 1.32040 * 119.03146 * 180.29578 * 7 6 4 9 9 C 1.32553 * 121.09381 * 359.72516 * 8 7 6 10 10 O 1.35283 * 118.96024 * 179.97438 * 9 8 7 11 11 N 1.32320 * 122.07593 * 0.02562 * 9 8 7 12 12 C 1.32631 * 120.82920 * 359.97438 * 11 9 8 13 13 O 1.35269 * 120.58616 * 180.02562 * 12 11 9 14 14 C 1.42907 * 116.99797 * 359.97438 * 13 12 11 15 15 H 1.08996 * 109.46688 * 30.00445 * 14 13 12 16 16 C 1.50691 * 109.47064 * 270.00250 * 14 13 12 17 17 H 1.08001 * 120.00412 * 304.91281 * 16 14 13 18 18 C 1.37876 * 120.00120 * 124.91727 * 16 14 13 19 19 N 1.31514 * 120.00164 * 186.00400 * 18 16 14 20 20 Si 1.86807 * 119.99776 * 5.99503 * 18 16 14 21 21 H 1.48494 * 109.47033 * 275.18625 * 20 18 16 22 22 H 1.48497 * 109.46667 * 35.18664 * 20 18 16 23 23 H 1.48500 * 109.46926 * 155.18656 * 20 18 16 24 24 C 1.50700 * 109.46476 * 150.00257 * 14 13 12 25 25 C 1.38237 * 120.00261 * 37.72185 * 24 14 13 26 26 C 1.38234 * 119.99651 * 179.81058 * 25 24 14 27 27 C 1.38235 * 120.00431 * 0.38896 * 26 25 24 28 28 C 1.38233 * 119.99811 * 359.86283 * 27 26 25 29 29 C 1.38233 * 119.99974 * 359.95269 * 28 27 26 30 30 H 1.08996 * 109.47282 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47081 * 299.99777 * 1 2 3 32 32 H 1.09004 * 109.47319 * 59.99588 * 1 2 3 33 33 H 1.09001 * 109.46570 * 240.00334 * 2 1 3 34 34 H 1.09004 * 109.47319 * 120.00412 * 2 1 3 35 35 H 1.07993 * 120.48606 * 0.02562 * 7 6 4 36 36 H 0.96698 * 114.00271 * 270.02169 * 10 9 8 37 37 H 0.97004 * 119.99677 * 179.97438 * 19 18 16 38 38 H 1.07998 * 119.99787 * 359.97438 * 25 24 14 39 39 H 1.08004 * 119.99461 * 180.23034 * 26 25 24 40 40 H 1.07993 * 120.00124 * 179.83652 * 27 26 25 41 41 H 1.07994 * 120.00144 * 179.97438 * 28 27 26 42 42 H 1.08006 * 120.00134 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3502 1.5456 -0.0005 5 8 4.0905 0.5817 -0.0015 6 6 3.9127 2.9056 0.0000 7 6 3.0781 4.0295 0.0058 8 7 3.6228 5.2322 0.0001 9 6 4.9392 5.3875 -0.0055 10 8 5.4511 6.6397 -0.0117 11 7 5.7684 4.3563 -0.0061 12 6 5.3068 3.1129 -0.0006 13 8 6.1589 2.0624 -0.0008 14 6 7.5565 2.3607 -0.0076 15 1 7.7281 3.3085 0.5025 16 6 8.0417 2.4610 -1.4307 17 1 7.8814 1.6409 -2.1151 18 6 8.6905 3.5996 -1.8593 19 7 9.0089 3.7370 -3.1279 20 14 9.1169 4.9472 -0.6380 21 1 7.9476 5.8458 -0.4642 22 1 9.4709 4.3370 0.6688 23 1 10.2714 5.7300 -1.1477 24 6 8.3074 1.2644 0.7032 25 6 7.9102 -0.0518 0.5584 26 6 8.6015 -1.0577 1.2073 27 6 9.6851 -0.7468 2.0074 28 6 10.0791 0.5698 2.1564 29 6 9.3901 1.5754 1.5044 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 2.0043 3.9144 0.0103 36 1 5.5962 7.0009 -0.8969 37 1 9.4650 4.5382 -3.4294 38 1 7.0615 -0.2943 -0.0638 39 1 8.2935 -2.0863 1.0912 40 1 10.2235 -1.5324 2.5165 41 1 10.9253 0.8128 2.7818 42 1 9.6982 2.6041 1.6204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225898832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:31 Heat of formation + Delta-G solvation = -75.275675 kcal Electronic energy + Delta-G solvation = -30377.573733 eV Core-core repulsion = 26096.533955 eV Total energy + Delta-G solvation = -4281.039778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18769 -39.85071 -38.98297 -37.88745 -36.81825 -36.27710 -33.39202 -32.93814 -32.04790 -31.43707 -30.60933 -30.24891 -27.44950 -25.07391 -24.44972 -23.14010 -22.81350 -21.95831 -21.32176 -20.43411 -19.22377 -18.29997 -17.55956 -17.27034 -17.10730 -16.49828 -16.32193 -16.13563 -15.62765 -15.03206 -14.53199 -14.37372 -14.04493 -13.96290 -13.75871 -13.60049 -13.18960 -12.92644 -12.88830 -12.77744 -12.68157 -12.14224 -11.98251 -11.95138 -11.92204 -11.68403 -11.36405 -11.20221 -10.89006 -10.58521 -10.48597 -10.42356 -10.10922 -9.92367 -9.82826 -9.57994 -9.04393 -8.82234 -8.66692 -8.30158 -7.96621 -6.39151 -4.46908 0.52041 1.43666 1.97984 2.03563 2.63855 2.70149 3.12887 3.21029 3.28616 3.37384 3.50261 3.92304 4.22801 4.30964 4.46507 4.74626 4.85171 4.90113 4.94678 5.03315 5.14329 5.20292 5.33337 5.46052 5.51404 5.62553 5.65950 5.66473 5.82878 5.87772 6.08648 6.14293 6.24077 6.31839 6.49003 6.59097 6.69732 6.92881 7.05411 7.12635 7.17571 7.30787 7.49574 7.63174 7.79504 7.97972 8.14790 8.20704 8.70318 9.20541 10.70023 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.008506 B = 0.005314 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.955619 B = 5267.501381 C = 7568.909749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.362 6.362 4 C 0.523 3.477 5 O -0.478 6.478 6 C -0.289 4.289 7 C 0.252 3.748 8 N -0.570 5.570 9 C 0.562 3.438 10 O -0.459 6.459 11 N -0.571 5.571 12 C 0.467 3.533 13 O -0.264 6.264 14 C 0.201 3.799 15 H 0.069 0.931 16 C -0.525 4.525 17 H 0.083 0.917 18 C 0.093 3.907 19 N -0.871 5.871 20 Si 0.877 3.123 21 H -0.244 1.244 22 H -0.267 1.267 23 H -0.292 1.292 24 C -0.041 4.041 25 C -0.098 4.098 26 C -0.125 4.125 27 C -0.141 4.141 28 C -0.124 4.124 29 C -0.124 4.124 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.187 0.813 36 H 0.416 0.584 37 H 0.271 0.729 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 -2.464 7.219 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.280 6.280 4 C 0.365 3.635 5 O -0.364 6.364 6 C -0.298 4.298 7 C 0.086 3.914 8 N -0.302 5.302 9 C 0.259 3.741 10 O -0.263 6.263 11 N -0.314 5.314 12 C 0.279 3.721 13 O -0.163 6.163 14 C 0.148 3.852 15 H 0.087 0.913 16 C -0.561 4.561 17 H 0.101 0.899 18 C -0.115 4.115 19 N -0.506 5.506 20 Si 0.704 3.296 21 H -0.168 1.168 22 H -0.192 1.192 23 H -0.219 1.219 24 C -0.041 4.041 25 C -0.116 4.116 26 C -0.143 4.143 27 C -0.160 4.160 28 C -0.142 4.142 29 C -0.142 4.142 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.204 0.796 36 H 0.278 0.722 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.086 -2.101 7.649 13.631 hybrid contribution 0.457 0.039 -0.187 0.495 sum -10.628 -2.062 7.462 13.149 Atomic orbital electron populations 1.21802 0.92781 1.02821 1.03440 1.22977 0.94987 0.80183 1.02786 1.86488 1.23968 1.32320 1.85238 1.20194 0.80434 0.88915 0.73917 1.90925 1.59819 1.41533 1.44167 1.19902 0.92251 0.93703 1.23897 1.23236 1.00423 0.84490 0.83258 1.68034 1.12820 1.26561 1.22752 1.20186 0.83579 0.85067 0.85304 1.84571 1.83456 1.23775 1.34526 1.67924 1.40697 0.98757 1.23979 1.19795 0.87202 0.85381 0.79732 1.86560 1.21044 1.28295 1.80412 1.19654 0.74239 0.93631 0.97690 0.91332 1.21016 1.38268 1.03918 0.92868 0.89864 1.25067 0.93736 0.97488 0.95166 1.69917 1.37950 1.28190 1.14548 0.86883 0.78970 0.82608 0.81152 1.16823 1.19216 1.21923 1.19965 0.95819 0.94915 0.93435 1.21038 0.99609 0.92088 0.98879 1.21055 0.96303 0.98739 0.98190 1.20934 0.98218 0.96081 1.00727 1.20927 0.99773 0.93012 1.00458 1.20988 0.96397 0.99467 0.97350 0.90389 0.91535 0.91468 0.91126 0.91238 0.79599 0.72248 0.91952 0.85621 0.86837 0.87019 0.86793 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 37.16 0.38 -0.72 16 2 C 0.06 0.69 6.20 37.16 0.23 0.92 16 3 O -0.36 -4.82 9.56 -40.70 -0.39 -5.21 16 4 C 0.52 8.88 7.90 34.36 0.27 9.15 16 5 O -0.48 -9.57 15.10 -26.42 -0.40 -9.97 16 6 C -0.29 -5.08 5.92 -104.59 -0.62 -5.69 16 7 C 0.25 3.63 10.89 -16.81 -0.18 3.45 16 8 N -0.57 -9.19 10.44 -14.42 -0.15 -9.34 16 9 C 0.56 10.19 8.69 -91.05 -0.79 9.39 16 10 O -0.46 -7.34 13.37 -17.54 -0.23 -7.57 16 11 N -0.57 -12.04 7.62 -14.46 -0.11 -12.15 16 12 C 0.47 9.88 7.50 -16.18 -0.12 9.76 16 13 O -0.26 -6.19 7.23 -38.72 -0.28 -6.47 16 14 C 0.20 4.88 2.03 -29.04 -0.06 4.82 16 15 H 0.07 1.68 3.66 -51.93 -0.19 1.49 16 16 C -0.52 -14.47 9.17 -34.45 -0.32 -14.79 16 17 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 18 C 0.09 2.54 5.47 -17.82 -0.10 2.45 16 19 N -0.87 -25.19 13.96 55.43 0.77 -24.42 16 20 Si 0.88 20.71 25.96 -169.99 -4.41 16.30 16 21 H -0.24 -5.44 6.61 56.52 0.37 -5.07 16 22 H -0.27 -6.11 5.30 56.52 0.30 -5.82 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C -0.04 -0.92 4.97 -104.62 -0.52 -1.44 16 25 C -0.10 -2.05 9.36 -39.58 -0.37 -2.43 16 26 C -0.12 -2.21 10.05 -39.58 -0.40 -2.61 16 27 C -0.14 -2.33 10.05 -39.58 -0.40 -2.73 16 28 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 29 C -0.12 -2.55 9.67 -39.58 -0.38 -2.93 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.19 1.90 7.70 -52.49 -0.40 1.50 16 36 H 0.42 4.76 9.06 45.56 0.41 5.17 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.13 2.73 7.71 -52.49 -0.40 2.33 16 39 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.12 2.40 6.51 -52.48 -0.34 2.06 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -33.25 366.32 -7.45 -40.70 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.00 Total: 8.55 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -3.77 Total: 4.06 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.51 Total: -45.91 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -1.30 Total: -29.22 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.41 Total: 16.30 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.25 -7.45 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225898832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.576 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds