Wall clock time and date at job start Wed Apr 1 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 116.99881 * 2 1 4 4 O 1.20823 * 120.00157 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00074 * 180.02562 * 3 2 1 6 6 C 1.50698 * 109.47392 * 179.97438 * 5 3 2 7 7 C 1.39038 * 120.84726 * 270.26750 * 6 5 3 8 8 O 1.35532 * 120.47603 * 0.02562 * 7 6 5 9 9 N 1.32951 * 119.04353 * 180.26914 * 7 6 5 10 10 C 1.31772 * 120.86879 * 359.72668 * 9 7 6 11 11 N 1.31751 * 121.86814 * 0.02562 * 10 9 7 12 12 C 1.32985 * 120.86522 * 359.97438 * 11 10 9 13 13 O 1.35533 * 120.47437 * 180.02562 * 12 11 10 14 14 C 1.42906 * 116.99993 * 0.02562 * 13 12 11 15 15 H 1.09000 * 109.47141 * 329.99581 * 14 13 12 16 16 C 1.50697 * 109.47176 * 89.99934 * 14 13 12 17 17 H 1.08001 * 119.99890 * 239.99367 * 16 14 13 18 18 C 1.37876 * 120.00428 * 60.00021 * 16 14 13 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 14 20 20 Si 1.86792 * 120.00252 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47267 * 89.99845 * 20 18 16 22 22 H 1.48505 * 109.47285 * 209.99888 * 20 18 16 23 23 H 1.48503 * 109.47250 * 329.99683 * 20 18 16 24 24 C 1.50706 * 109.46702 * 209.99779 * 14 13 12 25 25 C 1.38229 * 119.99971 * 324.72615 * 24 14 13 26 26 C 1.38237 * 119.99580 * 179.78987 * 25 24 14 27 27 C 1.38232 * 120.00447 * 0.43952 * 26 25 24 28 28 C 1.38240 * 119.99575 * 359.81026 * 27 26 25 29 29 C 1.38234 * 119.99624 * 144.99947 * 24 14 13 30 30 H 1.09005 * 109.47098 * 300.00017 * 1 2 3 31 31 H 1.09000 * 109.47522 * 60.00701 * 1 2 3 32 32 H 1.09002 * 109.47205 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47398 * 59.99177 * 5 3 2 34 34 H 1.09001 * 109.46867 * 299.99398 * 5 3 2 35 35 H 0.96701 * 113.99605 * 270.25083 * 8 7 6 36 36 H 1.07997 * 119.06616 * 179.97438 * 10 9 7 37 37 H 0.97002 * 119.99731 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.00482 * 359.97438 * 25 24 14 39 39 H 1.08008 * 120.00086 * 180.27139 * 26 25 24 40 40 H 1.07992 * 120.00823 * 179.83316 * 27 26 25 41 41 H 1.08003 * 119.99734 * 179.97438 * 28 27 26 42 42 H 1.08004 * 120.00484 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9936 2.7201 -0.0011 7 6 4.1899 3.4050 -1.1950 8 8 3.9992 2.7828 -2.3839 9 7 4.5721 4.6777 -1.1537 10 6 4.7592 5.2904 -0.0021 11 7 4.5786 4.6767 1.1497 12 6 4.1965 3.4037 1.1919 13 8 4.0126 2.7803 2.3812 14 6 4.2468 3.5518 3.5611 15 1 5.0085 4.3045 3.3578 16 6 2.9682 4.2310 3.9793 17 1 2.9227 5.3085 4.0359 18 6 1.8565 3.4768 4.2897 19 7 1.9118 2.1646 4.2204 20 14 0.2714 4.3188 4.8072 21 1 -0.5577 4.5943 3.6065 22 1 -0.4789 3.4343 5.7346 23 1 0.5908 5.5971 5.4922 24 6 4.7194 2.6452 4.6684 25 6 4.2196 1.3605 4.7706 26 6 4.6564 0.5275 5.7836 27 6 5.5861 0.9823 6.6999 28 6 6.0821 2.2689 6.6008 29 6 5.6485 3.1004 5.5852 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.9557 0.7809 -0.8908 34 1 3.9563 0.7807 0.8892 35 1 4.7900 2.3482 -2.7315 36 1 5.0702 6.3246 -0.0025 37 1 1.1298 1.6340 4.4391 38 1 3.4901 1.0065 4.0572 39 1 4.2692 -0.4778 5.8609 40 1 5.9254 0.3325 7.4930 41 1 6.8082 2.6243 7.3169 42 1 6.0360 4.1055 5.5077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230501388.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:54 Heat of formation + Delta-G solvation = -73.294840 kcal Electronic energy + Delta-G solvation = -31039.547222 eV Core-core repulsion = 26758.593340 eV Total energy + Delta-G solvation = -4280.953882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94457 -39.78447 -38.63619 -37.66645 -36.74910 -36.06627 -33.55589 -32.64514 -31.90100 -30.61349 -29.76547 -28.58796 -27.06359 -26.73552 -23.96497 -23.19546 -22.65783 -21.49979 -20.57701 -20.31085 -18.99132 -18.02872 -17.32613 -16.94811 -16.48376 -16.12881 -15.99953 -15.76352 -15.16266 -14.95725 -14.62974 -14.15270 -14.06705 -13.87730 -13.55899 -13.24243 -13.15742 -12.99269 -12.89037 -12.42949 -12.00395 -11.88214 -11.78433 -11.74626 -11.68649 -11.60932 -11.03659 -10.76461 -10.55509 -10.44161 -10.24977 -10.16994 -10.07702 -9.72978 -9.49478 -9.26186 -8.92904 -8.80546 -8.20695 -7.88553 -7.61290 -6.14689 -4.45751 1.20041 1.71310 2.33060 2.49376 2.72931 3.13037 3.19509 3.26535 3.29197 3.52784 3.96636 4.22693 4.28397 4.56940 4.85556 4.94097 5.03465 5.17678 5.29233 5.30118 5.34746 5.44687 5.49571 5.72421 5.76195 5.83185 5.89834 5.95666 6.06610 6.22362 6.40880 6.59687 6.62069 6.77223 6.77963 6.95475 7.16860 7.32751 7.39090 7.50311 7.59839 7.69785 7.83554 7.88740 8.13596 8.20907 8.23516 8.57263 8.69757 9.29544 10.69572 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.009152 B = 0.005063 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.865691 B = 5529.094026 C = 6144.361383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.363 6.363 3 C 0.469 3.531 4 O -0.492 6.492 5 C -0.039 4.039 6 C -0.244 4.244 7 C 0.388 3.612 8 O -0.475 6.475 9 N -0.582 5.582 10 C 0.353 3.647 11 N -0.569 5.569 12 C 0.422 3.578 13 O -0.272 6.272 14 C 0.240 3.760 15 H 0.058 0.942 16 C -0.525 4.525 17 H 0.070 0.930 18 C 0.082 3.918 19 N -0.848 5.848 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.271 1.271 24 C -0.048 4.048 25 C -0.049 4.049 26 C -0.151 4.151 27 C -0.142 4.142 28 C -0.147 4.147 29 C -0.122 4.122 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.400 0.600 36 H 0.196 0.804 37 H 0.265 0.735 38 H 0.162 0.838 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.347 -5.244 -6.666 10.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.281 6.281 3 C 0.311 3.689 4 O -0.377 6.377 5 C -0.078 4.078 6 C -0.251 4.251 7 C 0.204 3.796 8 O -0.282 6.282 9 N -0.313 5.313 10 C 0.065 3.935 11 N -0.301 5.301 12 C 0.235 3.765 13 O -0.172 6.172 14 C 0.187 3.813 15 H 0.076 0.924 16 C -0.561 4.561 17 H 0.088 0.912 18 C -0.124 4.124 19 N -0.483 5.483 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.195 1.195 24 C -0.049 4.049 25 C -0.068 4.068 26 C -0.169 4.169 27 C -0.160 4.160 28 C -0.166 4.166 29 C -0.140 4.140 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.258 0.742 36 H 0.213 0.787 37 H 0.075 0.925 38 H 0.179 0.821 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.573 -4.374 -6.427 9.019 hybrid contribution -1.161 -0.245 0.532 1.301 sum 3.411 -4.619 -5.895 8.230 Atomic orbital electron populations 1.23157 0.76931 1.02980 1.02444 1.86446 1.23004 1.33814 1.84810 1.23485 0.91739 0.81254 0.72442 1.90689 1.66868 1.36306 1.43841 1.19650 0.88339 0.93705 1.06075 1.20076 1.15281 0.97867 0.91912 1.18810 0.89409 0.87211 0.84152 1.84746 1.38231 1.70820 1.34361 1.67924 1.21234 1.10117 1.32050 1.24416 0.88780 0.99335 0.80984 1.68292 1.21194 1.09594 1.31042 1.19880 0.82594 0.86354 0.87628 1.86489 1.77875 1.41270 1.11547 1.19100 0.96657 0.87787 0.77766 0.92433 1.21321 0.94898 0.93566 1.46352 0.91215 1.25048 0.99210 0.94819 0.93337 1.69765 1.28950 1.04252 1.45316 0.86512 0.82914 0.79708 0.78574 1.20285 1.20854 1.19522 1.19839 0.93537 0.94408 0.97124 1.21861 0.94341 0.92644 0.97983 1.21140 0.98982 0.99473 0.97325 1.20858 0.99581 0.96067 0.99531 1.20724 1.01959 0.94721 0.99171 1.20762 0.98256 0.98925 0.96067 0.91823 0.92448 0.88586 0.87552 0.86068 0.74176 0.78726 0.92494 0.82062 0.87863 0.88091 0.87754 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.36 -6.01 10.57 -39.26 -0.41 -6.43 16 3 C 0.47 8.87 7.95 36.01 0.29 9.15 16 4 O -0.49 -11.31 15.78 -18.75 -0.30 -11.61 16 5 C -0.04 -0.62 5.58 -29.03 -0.16 -0.78 16 6 C -0.24 -4.48 4.44 -104.05 -0.46 -4.94 16 7 C 0.39 6.60 7.80 -16.77 -0.13 6.47 16 8 O -0.47 -6.50 12.75 -18.29 -0.23 -6.73 16 9 N -0.58 -10.11 10.46 -14.70 -0.15 -10.27 16 10 C 0.35 6.03 12.28 -92.21 -1.13 4.89 16 11 N -0.57 -11.53 8.81 -14.71 -0.13 -11.65 16 12 C 0.42 8.95 7.45 -16.77 -0.13 8.83 16 13 O -0.27 -6.29 7.49 -18.29 -0.14 -6.43 16 14 C 0.24 5.71 2.37 -29.03 -0.07 5.64 16 15 H 0.06 1.34 6.92 -51.93 -0.36 0.98 16 16 C -0.53 -13.79 8.89 -34.44 -0.31 -14.10 16 17 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 18 C 0.08 2.16 5.24 -17.82 -0.09 2.07 16 19 N -0.85 -21.86 8.50 55.43 0.47 -21.38 16 20 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 C -0.05 -1.10 4.80 -104.62 -0.50 -1.60 16 25 C -0.05 -1.10 7.46 -39.59 -0.30 -1.40 16 26 C -0.15 -2.96 10.05 -39.58 -0.40 -3.36 16 27 C -0.14 -2.58 10.05 -39.58 -0.40 -2.98 16 28 C -0.15 -2.71 10.05 -39.58 -0.40 -3.10 16 29 C -0.12 -2.48 9.68 -39.58 -0.38 -2.87 16 30 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 31 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.11 1.24 7.63 -51.93 -0.40 0.84 16 34 H 0.12 1.92 7.63 -51.93 -0.40 1.52 16 35 H 0.40 2.97 9.06 45.56 0.41 3.39 16 36 H 0.20 2.49 8.06 -52.49 -0.42 2.07 16 37 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.16 3.87 5.50 -52.49 -0.29 3.59 16 39 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.11 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -33.03 367.42 -7.83 -40.86 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -3.95 Total: 8.41 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -3.50 Total: 3.52 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.19 Total: -43.30 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.08 Total: -31.20 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.03 -7.83 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230501388.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.431 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds