Wall clock time and date at job start Wed Apr 1 2020 03:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 116.99881 * 2 1 4 4 O 1.20823 * 120.00157 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00074 * 180.02562 * 3 2 1 6 6 C 1.50698 * 109.47392 * 179.97438 * 5 3 2 7 7 C 1.39038 * 120.84726 * 270.26750 * 6 5 3 8 8 O 1.35532 * 120.47603 * 0.02562 * 7 6 5 9 9 N 1.32951 * 119.04353 * 180.26914 * 7 6 5 10 10 C 1.31772 * 120.86879 * 359.72668 * 9 7 6 11 11 N 1.31751 * 121.86814 * 0.02562 * 10 9 7 12 12 C 1.32985 * 120.86522 * 359.97438 * 11 10 9 13 13 O 1.35533 * 120.47437 * 180.02562 * 12 11 10 14 14 C 1.42906 * 116.99993 * 0.02562 * 13 12 11 15 15 H 1.09000 * 109.47141 * 329.99581 * 14 13 12 16 16 C 1.50697 * 109.47176 * 89.99934 * 14 13 12 17 17 H 1.08001 * 119.99890 * 239.99367 * 16 14 13 18 18 C 1.37876 * 120.00428 * 60.00021 * 16 14 13 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 14 20 20 Si 1.86792 * 120.00252 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47267 * 89.99845 * 20 18 16 22 22 H 1.48505 * 109.47285 * 209.99888 * 20 18 16 23 23 H 1.48503 * 109.47250 * 329.99683 * 20 18 16 24 24 C 1.50706 * 109.46702 * 209.99779 * 14 13 12 25 25 C 1.38229 * 119.99971 * 324.72615 * 24 14 13 26 26 C 1.38237 * 119.99580 * 179.78987 * 25 24 14 27 27 C 1.38232 * 120.00447 * 0.43952 * 26 25 24 28 28 C 1.38240 * 119.99575 * 359.81026 * 27 26 25 29 29 C 1.38234 * 119.99624 * 144.99947 * 24 14 13 30 30 H 1.09005 * 109.47098 * 300.00017 * 1 2 3 31 31 H 1.09000 * 109.47522 * 60.00701 * 1 2 3 32 32 H 1.09002 * 109.47205 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47398 * 59.99177 * 5 3 2 34 34 H 1.09001 * 109.46867 * 299.99398 * 5 3 2 35 35 H 0.96701 * 113.99605 * 270.25083 * 8 7 6 36 36 H 1.07997 * 119.06616 * 179.97438 * 10 9 7 37 37 H 0.97002 * 119.99731 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.00482 * 359.97438 * 25 24 14 39 39 H 1.08008 * 120.00086 * 180.27139 * 26 25 24 40 40 H 1.07992 * 120.00823 * 179.83316 * 27 26 25 41 41 H 1.08003 * 119.99734 * 179.97438 * 28 27 26 42 42 H 1.08004 * 120.00484 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9936 2.7201 -0.0011 7 6 4.1899 3.4050 -1.1950 8 8 3.9992 2.7828 -2.3839 9 7 4.5721 4.6777 -1.1537 10 6 4.7592 5.2904 -0.0021 11 7 4.5786 4.6767 1.1497 12 6 4.1965 3.4037 1.1919 13 8 4.0126 2.7803 2.3812 14 6 4.2468 3.5518 3.5611 15 1 5.0085 4.3045 3.3578 16 6 2.9682 4.2310 3.9793 17 1 2.9227 5.3085 4.0359 18 6 1.8565 3.4768 4.2897 19 7 1.9118 2.1646 4.2204 20 14 0.2714 4.3188 4.8072 21 1 -0.5577 4.5943 3.6065 22 1 -0.4789 3.4343 5.7346 23 1 0.5908 5.5971 5.4922 24 6 4.7194 2.6452 4.6684 25 6 4.2196 1.3605 4.7706 26 6 4.6564 0.5275 5.7836 27 6 5.5861 0.9823 6.6999 28 6 6.0821 2.2689 6.6008 29 6 5.6485 3.1004 5.5852 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.9557 0.7809 -0.8908 34 1 3.9563 0.7807 0.8892 35 1 4.7900 2.3482 -2.7315 36 1 5.0702 6.3246 -0.0025 37 1 1.1298 1.6340 4.4391 38 1 3.4901 1.0065 4.0572 39 1 4.2692 -0.4778 5.8609 40 1 5.9254 0.3325 7.4930 41 1 6.8082 2.6243 7.3169 42 1 6.0360 4.1055 5.5077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230501388.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:53 Heat of formation + Delta-G solvation = -96.604113 kcal Electronic energy + Delta-G solvation = -31040.557988 eV Core-core repulsion = 26758.593340 eV Total energy + Delta-G solvation = -4281.964648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.35696 -41.22478 -40.20311 -39.06129 -38.15548 -37.50582 -35.26636 -34.16298 -33.37149 -32.24465 -31.31417 -29.92014 -28.83402 -27.97165 -25.62323 -24.58387 -24.22424 -23.03108 -22.04231 -21.82835 -20.36691 -19.54862 -18.74343 -18.49723 -18.04070 -17.55787 -17.43030 -17.21455 -16.89265 -16.48272 -16.14353 -15.71777 -15.42356 -15.33792 -15.13299 -14.66006 -14.52528 -14.46141 -14.36634 -13.97499 -13.56358 -13.47567 -13.28053 -13.10917 -13.06932 -12.97661 -12.93254 -12.55739 -12.24720 -11.87833 -11.79687 -11.65289 -11.58193 -11.31460 -11.16924 -10.83859 -10.77543 -10.29467 -9.73796 -9.44158 -9.24649 -8.05651 -6.44401 -0.13988 0.25177 0.77493 0.95525 1.27013 1.27640 1.32095 1.37895 1.84926 2.16268 2.29371 2.56942 2.86085 3.07258 3.24733 3.32510 3.60606 3.77853 3.94207 4.05666 4.26966 4.29315 4.30107 4.32758 4.37475 4.51919 4.60118 4.64565 4.65527 4.77267 4.85696 5.00700 5.17066 5.25451 5.41023 5.41337 5.55531 5.65208 5.84924 5.93145 5.98011 6.09244 6.26503 6.41479 6.53833 6.59953 6.78847 6.82743 7.16912 7.31902 8.72778 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.009152 B = 0.005063 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.865691 B = 5529.094026 C = 6144.361383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.542 6.542 5 C -0.036 4.036 6 C -0.253 4.253 7 C 0.398 3.602 8 O -0.472 6.472 9 N -0.584 5.584 10 C 0.352 3.648 11 N -0.596 5.596 12 C 0.391 3.609 13 O -0.285 6.285 14 C 0.248 3.752 15 H 0.048 0.952 16 C -0.548 4.548 17 H 0.051 0.949 18 C 0.048 3.952 19 N -0.851 5.851 20 Si 0.936 3.064 21 H -0.291 1.291 22 H -0.273 1.273 23 H -0.268 1.268 24 C -0.074 4.074 25 C -0.067 4.067 26 C -0.156 4.156 27 C -0.135 4.135 28 C -0.142 4.142 29 C -0.135 4.135 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.155 0.845 34 H 0.119 0.881 35 H 0.429 0.571 36 H 0.233 0.767 37 H 0.262 0.738 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.515 -6.590 -6.722 11.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.312 3.688 4 O -0.431 6.431 5 C -0.074 4.074 6 C -0.260 4.260 7 C 0.214 3.786 8 O -0.284 6.284 9 N -0.315 5.315 10 C 0.064 3.936 11 N -0.328 5.328 12 C 0.206 3.794 13 O -0.186 6.186 14 C 0.195 3.805 15 H 0.066 0.934 16 C -0.584 4.584 17 H 0.069 0.931 18 C -0.157 4.157 19 N -0.486 5.486 20 Si 0.763 3.237 21 H -0.218 1.218 22 H -0.198 1.198 23 H -0.192 1.192 24 C -0.075 4.075 25 C -0.086 4.086 26 C -0.175 4.175 27 C -0.153 4.153 28 C -0.160 4.160 29 C -0.153 4.153 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.157 0.843 33 H 0.173 0.827 34 H 0.137 0.863 35 H 0.293 0.707 36 H 0.249 0.751 37 H 0.072 0.928 38 H 0.155 0.845 39 H 0.141 0.859 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.775 -5.761 -6.510 10.436 hybrid contribution -1.467 0.133 0.419 1.532 sum 4.308 -5.628 -6.091 9.345 Atomic orbital electron populations 1.23437 0.75500 1.05533 1.01569 1.86447 1.24445 1.32580 1.84117 1.24074 0.92795 0.81063 0.70907 1.90666 1.68103 1.37929 1.46434 1.19800 0.86530 0.92853 1.08221 1.20272 1.15283 0.99066 0.91376 1.18907 0.87799 0.87145 0.84787 1.84697 1.40262 1.70767 1.32626 1.68061 1.21197 1.10321 1.31900 1.25171 0.87708 1.00545 0.80141 1.68272 1.22119 1.09718 1.32726 1.20280 0.84072 0.87245 0.87836 1.86405 1.78935 1.41246 1.12060 1.18868 0.95159 0.88063 0.78455 0.93356 1.21421 0.96683 0.92872 1.47442 0.93071 1.25521 1.00840 0.95506 0.93831 1.69935 1.28883 1.04338 1.45454 0.85900 0.80690 0.79372 0.77776 1.21818 1.19792 1.19221 1.19917 0.95184 0.94791 0.97610 1.21663 0.94913 0.93178 0.98838 1.21385 0.99226 1.00052 0.96792 1.21281 0.98119 0.96414 0.99499 1.21141 1.01760 0.94452 0.98634 1.20993 0.98120 0.99835 0.96389 0.94123 0.91960 0.84290 0.82735 0.86261 0.70720 0.75077 0.92849 0.84451 0.85925 0.84283 0.84194 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 10.56 113.37 1.20 2.09 16 2 O -0.36 -11.67 10.57 -51.43 -0.54 -12.21 16 3 C 0.47 17.73 7.95 71.24 0.57 18.29 16 4 O -0.54 -25.60 15.78 21.97 0.35 -25.26 16 5 C -0.04 -1.13 5.58 29.10 0.16 -0.96 16 6 C -0.25 -9.29 4.44 -19.49 -0.09 -9.38 16 7 C 0.40 13.09 7.80 84.72 0.66 13.75 16 8 O -0.47 -11.74 12.75 -88.36 -1.13 -12.87 16 9 N -0.58 -19.66 10.46 -313.02 -3.27 -22.93 16 10 C 0.35 11.90 12.28 180.90 2.22 14.12 16 11 N -0.60 -24.80 8.81 -313.02 -2.76 -27.55 16 12 C 0.39 17.14 7.45 84.70 0.63 17.77 16 13 O -0.29 -13.81 7.49 -88.37 -0.66 -14.47 16 14 C 0.25 12.34 2.37 29.10 0.07 12.41 16 15 H 0.05 2.39 6.92 -2.39 -0.02 2.37 16 16 C -0.55 -30.09 8.89 25.60 0.23 -29.86 16 17 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 18 C 0.05 2.62 5.24 84.65 0.44 3.06 16 19 N -0.85 -45.38 8.50 21.45 0.18 -45.20 16 20 Si 0.94 44.68 29.54 68.60 2.03 46.70 16 21 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 C -0.07 -3.45 4.80 -19.87 -0.10 -3.55 16 25 C -0.07 -3.03 7.46 22.27 0.17 -2.86 16 26 C -0.16 -5.93 10.05 22.27 0.22 -5.71 16 27 C -0.14 -4.49 10.05 22.27 0.22 -4.27 16 28 C -0.14 -4.83 10.05 22.27 0.22 -4.61 16 29 C -0.14 -5.46 9.68 22.27 0.22 -5.24 16 30 H 0.04 1.29 8.13 -2.38 -0.02 1.27 16 31 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 32 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.16 3.18 7.63 -2.38 -0.02 3.17 16 34 H 0.12 3.82 7.63 -2.39 -0.02 3.80 16 35 H 0.43 4.90 9.06 -74.06 -0.67 4.23 16 36 H 0.23 5.67 8.06 -2.91 -0.02 5.64 16 37 H 0.26 13.53 8.31 -92.71 -0.77 12.75 16 38 H 0.14 6.86 5.50 -2.91 -0.02 6.84 16 39 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 40 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 41 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 42 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -75.06 367.42 1.66 -73.40 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.41 Total: 25.34 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 7.05 Total: 15.05 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -5.85 Total: -95.69 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: -1.98 Total: -64.81 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -75.06 1.66 -73.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230501388.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.200 kcal (2) G-P(sol) polarization free energy of solvation -75.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds