Wall clock time and date at job start Wed Apr 1 2020 03:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48500 * 109.47369 * 85.16269 * 3 2 1 5 5 H 1.48500 * 109.47267 * 325.15914 * 3 2 1 6 6 H 1.48510 * 109.47047 * 205.15945 * 3 2 1 7 7 C 1.38813 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00553 * 170.13580 * 7 2 1 9 9 N 1.36942 * 119.99627 * 350.14505 * 7 2 1 10 10 C 1.47428 * 125.64513 * 344.84262 * 9 7 2 11 11 C 1.54917 * 104.82938 * 204.09414 * 10 9 7 12 12 C 1.55159 * 101.58183 * 322.99167 * 11 10 9 13 13 H 1.08994 * 110.71898 * 277.13806 * 12 11 10 14 14 O 1.42901 * 110.71938 * 154.04245 * 12 11 10 15 15 C 1.35218 * 116.99751 * 149.99699 * 14 12 11 16 16 N 1.32325 * 120.84800 * 359.72685 * 15 14 12 17 17 C 1.32858 * 121.43909 * 179.71040 * 16 15 14 18 18 O 1.35377 * 118.59127 * 180.27450 * 17 16 15 19 19 N 1.31819 * 122.82060 * 0.58033 * 17 16 15 20 20 C 1.33933 * 120.45517 * 359.71785 * 19 17 16 21 21 C 1.40401 * 121.69509 * 179.97438 * 20 19 17 22 22 C 1.35862 * 119.95141 * 180.02562 * 21 20 19 23 23 C 1.40585 * 120.87781 * 0.04006 * 22 21 20 24 24 C 1.47625 * 119.79107 * 179.97438 * 23 22 21 25 25 N 1.34778 * 120.00063 * 359.97438 * 24 23 22 26 26 O 1.21589 * 120.00297 * 179.97438 * 24 23 22 27 27 C 1.38860 * 120.42381 * 359.97438 * 23 22 21 28 28 C 1.39616 * 119.30972 * 359.97438 * 27 23 22 29 29 C 1.47017 * 125.64906 * 164.54044 * 9 7 2 30 30 H 0.96997 * 120.00333 * 359.97438 * 1 2 3 31 31 H 1.08996 * 110.36772 * 322.92775 * 10 9 7 32 32 H 1.08996 * 110.36928 * 85.25826 * 10 9 7 33 33 H 1.09002 * 111.00221 * 81.06321 * 11 10 9 34 34 H 1.08998 * 110.99937 * 204.91806 * 11 10 9 35 35 H 0.96700 * 113.99322 * 270.29684 * 18 17 16 36 36 H 1.07998 * 120.02161 * 359.97438 * 21 20 19 37 37 H 1.08003 * 119.56734 * 180.02562 * 22 21 20 38 38 H 0.97006 * 119.99520 * 359.97438 * 25 24 23 39 39 H 0.97000 * 120.00515 * 179.97438 * 25 24 23 40 40 H 1.08008 * 120.34888 * 179.97438 * 27 23 22 41 41 H 1.09007 * 109.88125 * 298.38627 * 29 9 7 42 42 H 1.08996 * 109.88798 * 59.55444 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3953 2.1055 1.3951 5 1 1.5024 2.6210 -0.7998 6 1 3.5951 1.4128 -0.5953 7 6 2.0103 -1.2021 -0.0005 8 1 3.0783 -1.2090 -0.1608 9 7 1.3407 -2.3794 0.2019 10 6 -0.0270 -2.5090 0.7368 11 6 -0.0829 -3.9342 1.3414 12 6 0.7756 -4.7363 0.3280 13 1 0.1792 -5.0288 -0.5362 14 8 1.3541 -5.8841 0.9526 15 6 1.5766 -6.9629 0.1684 16 7 1.2625 -6.9439 -1.1169 17 6 1.4812 -7.9950 -1.8994 18 8 1.1426 -7.9106 -3.2075 19 7 2.0083 -9.1188 -1.4556 20 6 2.3566 -9.2433 -0.1683 21 6 2.9194 -10.4282 0.3322 22 6 3.2592 -10.5160 1.6448 23 6 3.0545 -9.4327 2.5171 24 6 3.4321 -9.5546 3.9390 25 7 3.9707 -10.7019 4.3973 26 8 3.2572 -8.6199 4.6968 27 6 2.4994 -8.2488 2.0498 28 6 2.1465 -8.1442 0.7030 29 6 1.8644 -3.7231 -0.0839 30 1 -0.4850 0.8400 0.0004 31 1 -0.2042 -1.7617 1.5102 32 1 -0.7589 -2.4079 -0.0645 33 1 0.3646 -3.9549 2.3351 34 1 -1.1067 -4.3074 1.3677 35 1 0.2367 -8.1900 -3.3980 36 1 3.0814 -11.2694 -0.3254 37 1 3.6921 -11.4303 2.0231 38 1 4.1099 -11.4477 3.7929 39 1 4.2191 -10.7819 5.3316 40 1 2.3423 -7.4174 2.7212 41 1 2.0787 -3.8187 -1.1484 42 1 2.7704 -3.8990 0.4960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234520146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:56 Heat of formation + Delta-G solvation = -6.802999 kcal Electronic energy + Delta-G solvation = -29326.080557 eV Core-core repulsion = 25080.302728 eV Total energy + Delta-G solvation = -4245.777829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.84379 -40.05031 -39.31615 -38.30952 -36.78701 -36.10249 -34.15843 -33.65002 -32.33135 -31.61683 -30.23413 -29.31570 -27.55975 -25.32893 -25.05042 -24.25239 -22.76761 -21.92807 -20.63353 -20.43095 -19.76784 -18.93716 -18.40607 -17.86757 -17.47845 -16.92792 -16.41527 -16.18127 -15.54830 -15.17844 -15.05496 -14.79743 -14.58097 -14.51730 -14.23125 -14.16471 -13.64426 -13.57140 -13.15630 -12.53724 -12.30604 -12.14048 -12.02913 -11.98304 -11.75303 -11.34053 -11.12123 -10.92406 -10.81872 -10.59125 -10.42683 -10.15434 -10.08807 -10.02113 -9.89386 -9.79014 -9.67645 -9.46598 -8.64339 -8.45727 -6.84338 -5.80846 -3.16135 -0.16868 0.19702 1.42031 2.06112 2.51939 2.84208 3.05081 3.08733 3.39021 3.44576 3.46536 3.66920 3.81776 4.14518 4.23098 4.40584 4.47376 4.53264 4.77055 4.85550 5.13953 5.19037 5.26564 5.42024 5.47764 5.52752 5.60109 5.68479 5.70357 5.81030 6.11135 6.14456 6.27711 6.36345 6.39826 6.45277 6.56246 6.63555 6.92195 7.08718 7.28634 7.32988 7.48965 7.71745 7.79252 7.88888 8.18853 9.12394 9.73587 10.40694 11.32897 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.002869 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.129044 B = 9758.705565 C =11339.075198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.003 4.003 3 Si 0.913 3.087 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.597 5.597 10 C 0.177 3.823 11 C -0.141 4.141 12 C 0.069 3.931 13 H 0.103 0.897 14 O -0.273 6.273 15 C 0.451 3.549 16 N -0.595 5.595 17 C 0.559 3.441 18 O -0.455 6.455 19 N -0.552 5.552 20 C 0.228 3.772 21 C -0.119 4.119 22 C -0.042 4.042 23 C -0.174 4.174 24 C 0.567 3.433 25 N -0.852 5.852 26 O -0.533 6.533 27 C 0.033 3.967 28 C -0.196 4.196 29 C 0.125 3.875 30 H 0.255 0.745 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.415 0.585 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.400 0.600 39 H 0.406 0.594 40 H 0.157 0.843 41 H 0.034 0.966 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -26.824 3.317 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.200 4.200 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.094 0.906 9 N -0.324 5.324 10 C 0.052 3.948 11 C -0.179 4.179 12 C 0.014 3.986 13 H 0.121 0.879 14 O -0.172 6.172 15 C 0.253 3.747 16 N -0.339 5.339 17 C 0.255 3.745 18 O -0.259 6.259 19 N -0.285 5.285 20 C 0.101 3.899 21 C -0.138 4.138 22 C -0.063 4.063 23 C -0.177 4.177 24 C 0.353 3.647 25 N -0.417 5.417 26 O -0.410 6.410 27 C 0.012 3.988 28 C -0.201 4.201 29 C -0.001 4.001 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.275 0.725 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.230 0.770 39 H 0.237 0.763 40 H 0.175 0.825 41 H 0.052 0.948 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.055 -25.596 2.792 25.929 hybrid contribution 0.274 0.383 0.454 0.654 sum 3.329 -25.213 3.246 25.638 Atomic orbital electron populations 1.69929 1.05055 1.25495 1.55718 1.24903 0.95641 0.98002 1.01467 0.86086 0.78788 0.83215 0.77585 1.21451 1.21651 1.20453 1.19009 0.91076 0.82432 1.43594 0.90605 1.44325 1.14143 0.99706 1.74261 1.21379 0.87090 0.89570 0.96805 1.23289 0.97837 0.98103 0.98688 1.23946 0.95833 0.81292 0.97536 0.87917 1.86294 1.73887 1.20968 1.36071 1.20113 0.82553 0.86190 0.85807 1.67516 1.28674 1.32907 1.04845 1.19839 0.87370 0.82765 0.84566 1.84682 1.36642 1.87998 1.16592 1.68401 1.20414 1.25124 1.14514 1.18640 0.91570 0.92498 0.87202 1.20487 1.01105 0.96703 0.95522 1.20992 0.95197 0.97339 0.92813 1.19771 1.08059 0.95946 0.93942 1.18084 0.76691 0.82502 0.87430 1.43721 1.66724 1.16258 1.14978 1.90882 1.53895 1.38358 1.57911 1.21411 0.87592 0.96803 0.92952 1.18637 1.10014 0.94690 0.96801 1.21576 0.94334 0.86196 0.98016 0.93531 0.91287 0.94439 0.90601 0.91126 0.72510 0.83353 0.84571 0.77049 0.76290 0.82549 0.94802 0.95042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.92 55.49 0.61 -26.14 16 2 C 0.00 -0.08 5.38 -17.43 -0.09 -0.17 16 3 Si 0.91 22.16 29.56 -169.99 -5.03 17.13 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.59 10.21 -15.06 -0.15 -6.74 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 N -0.60 -15.52 3.39 -170.06 -0.58 -16.09 16 10 C 0.18 4.20 5.36 -2.52 -0.01 4.19 16 11 C -0.14 -2.61 6.81 -24.58 -0.17 -2.78 16 12 C 0.07 1.28 3.25 -24.89 -0.08 1.20 16 13 H 0.10 1.87 7.00 -51.93 -0.36 1.51 16 14 O -0.27 -4.54 9.21 -17.35 -0.16 -4.70 16 15 C 0.45 6.93 7.57 -16.05 -0.12 6.81 16 16 N -0.59 -9.31 8.79 -14.37 -0.13 -9.43 16 17 C 0.56 7.83 8.65 -91.21 -0.79 7.04 16 18 O -0.46 -5.38 13.63 -17.82 -0.24 -5.62 16 19 N -0.55 -7.31 10.46 -12.72 -0.13 -7.44 16 20 C 0.23 2.75 6.62 -84.76 -0.56 2.19 16 21 C -0.12 -0.99 9.97 -39.62 -0.40 -1.38 16 22 C -0.04 -0.28 9.44 -39.55 -0.37 -0.65 16 23 C -0.17 -1.66 5.87 -104.95 -0.62 -2.28 16 24 C 0.57 5.64 8.03 -12.43 -0.10 5.54 16 25 N -0.85 -4.33 8.82 30.48 0.27 -4.06 16 26 O -0.53 -7.77 17.14 5.29 0.09 -7.68 16 27 C 0.03 0.40 9.17 -38.84 -0.36 0.05 16 28 C -0.20 -2.58 5.75 -106.71 -0.61 -3.19 16 29 C 0.13 2.76 7.03 -3.06 -0.02 2.74 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.07 1.79 7.31 -51.93 -0.38 1.41 16 32 H 0.04 0.95 7.95 -51.93 -0.41 0.54 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.41 2.54 9.06 45.56 0.41 2.95 16 36 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.14 0.31 6.34 -52.48 -0.33 -0.03 16 38 H 0.40 0.71 6.81 -40.82 -0.28 0.43 16 39 H 0.41 1.64 8.93 -40.82 -0.36 1.27 16 40 H 0.16 2.05 7.27 -52.48 -0.38 1.67 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -36.32 359.75 -8.09 -44.41 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -3.76 Total: 1.65 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: -4.46 Total: 12.54 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.04 Total: -63.16 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.31 Total: -18.00 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.32 -8.09 -44.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234520146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.608 kcal (2) G-P(sol) polarization free energy of solvation -36.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds