Wall clock time and date at job start Wed Apr 1 2020 03:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48500 * 109.47369 * 85.16269 * 3 2 1 5 5 H 1.48500 * 109.47267 * 325.15914 * 3 2 1 6 6 H 1.48510 * 109.47047 * 205.15945 * 3 2 1 7 7 C 1.38813 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00553 * 170.13580 * 7 2 1 9 9 N 1.36942 * 119.99627 * 350.14505 * 7 2 1 10 10 C 1.47428 * 125.64513 * 344.84262 * 9 7 2 11 11 C 1.54917 * 104.82938 * 204.09414 * 10 9 7 12 12 C 1.55159 * 101.58183 * 322.99167 * 11 10 9 13 13 H 1.08994 * 110.71898 * 277.13806 * 12 11 10 14 14 O 1.42901 * 110.71938 * 154.04245 * 12 11 10 15 15 C 1.35218 * 116.99751 * 149.99699 * 14 12 11 16 16 N 1.32325 * 120.84800 * 359.72685 * 15 14 12 17 17 C 1.32858 * 121.43909 * 179.71040 * 16 15 14 18 18 O 1.35377 * 118.59127 * 180.27450 * 17 16 15 19 19 N 1.31819 * 122.82060 * 0.58033 * 17 16 15 20 20 C 1.33933 * 120.45517 * 359.71785 * 19 17 16 21 21 C 1.40401 * 121.69509 * 179.97438 * 20 19 17 22 22 C 1.35862 * 119.95141 * 180.02562 * 21 20 19 23 23 C 1.40585 * 120.87781 * 0.04006 * 22 21 20 24 24 C 1.47625 * 119.79107 * 179.97438 * 23 22 21 25 25 N 1.34778 * 120.00063 * 359.97438 * 24 23 22 26 26 O 1.21589 * 120.00297 * 179.97438 * 24 23 22 27 27 C 1.38860 * 120.42381 * 359.97438 * 23 22 21 28 28 C 1.39616 * 119.30972 * 359.97438 * 27 23 22 29 29 C 1.47017 * 125.64906 * 164.54044 * 9 7 2 30 30 H 0.96997 * 120.00333 * 359.97438 * 1 2 3 31 31 H 1.08996 * 110.36772 * 322.92775 * 10 9 7 32 32 H 1.08996 * 110.36928 * 85.25826 * 10 9 7 33 33 H 1.09002 * 111.00221 * 81.06321 * 11 10 9 34 34 H 1.08998 * 110.99937 * 204.91806 * 11 10 9 35 35 H 0.96700 * 113.99322 * 270.29684 * 18 17 16 36 36 H 1.07998 * 120.02161 * 359.97438 * 21 20 19 37 37 H 1.08003 * 119.56734 * 180.02562 * 22 21 20 38 38 H 0.97006 * 119.99520 * 359.97438 * 25 24 23 39 39 H 0.97000 * 120.00515 * 179.97438 * 25 24 23 40 40 H 1.08008 * 120.34888 * 179.97438 * 27 23 22 41 41 H 1.09007 * 109.88125 * 298.38627 * 29 9 7 42 42 H 1.08996 * 109.88798 * 59.55444 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3953 2.1055 1.3951 5 1 1.5024 2.6210 -0.7998 6 1 3.5951 1.4128 -0.5953 7 6 2.0103 -1.2021 -0.0005 8 1 3.0783 -1.2090 -0.1608 9 7 1.3407 -2.3794 0.2019 10 6 -0.0270 -2.5090 0.7368 11 6 -0.0829 -3.9342 1.3414 12 6 0.7756 -4.7363 0.3280 13 1 0.1792 -5.0288 -0.5362 14 8 1.3541 -5.8841 0.9526 15 6 1.5766 -6.9629 0.1684 16 7 1.2625 -6.9439 -1.1169 17 6 1.4812 -7.9950 -1.8994 18 8 1.1426 -7.9106 -3.2075 19 7 2.0083 -9.1188 -1.4556 20 6 2.3566 -9.2433 -0.1683 21 6 2.9194 -10.4282 0.3322 22 6 3.2592 -10.5160 1.6448 23 6 3.0545 -9.4327 2.5171 24 6 3.4321 -9.5546 3.9390 25 7 3.9707 -10.7019 4.3973 26 8 3.2572 -8.6199 4.6968 27 6 2.4994 -8.2488 2.0498 28 6 2.1465 -8.1442 0.7030 29 6 1.8644 -3.7231 -0.0839 30 1 -0.4850 0.8400 0.0004 31 1 -0.2042 -1.7617 1.5102 32 1 -0.7589 -2.4079 -0.0645 33 1 0.3646 -3.9549 2.3351 34 1 -1.1067 -4.3074 1.3677 35 1 0.2367 -8.1900 -3.3980 36 1 3.0814 -11.2694 -0.3254 37 1 3.6921 -11.4303 2.0231 38 1 4.1099 -11.4477 3.7929 39 1 4.2191 -10.7819 5.3316 40 1 2.3423 -7.4174 2.7212 41 1 2.0787 -3.8187 -1.1484 42 1 2.7704 -3.8990 0.4960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234520146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:55 Heat of formation + Delta-G solvation = -40.445056 kcal Electronic energy + Delta-G solvation = -29327.539386 eV Core-core repulsion = 25080.302728 eV Total energy + Delta-G solvation = -4247.236658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.83336 -40.94767 -40.55053 -39.19672 -38.36591 -37.13583 -34.88496 -34.82427 -34.16530 -32.50845 -31.33359 -30.97125 -29.29035 -26.81846 -26.11497 -25.59434 -23.70949 -22.92695 -22.29963 -21.94184 -20.73992 -19.90329 -19.33683 -19.05323 -18.81587 -18.14466 -17.35628 -17.25706 -16.91137 -16.67082 -16.11970 -16.02425 -15.88437 -15.64901 -15.29230 -15.18645 -14.91884 -14.56940 -14.39673 -14.34938 -13.87342 -13.60884 -13.12483 -13.02925 -12.89858 -12.81438 -12.74481 -12.48533 -12.39997 -12.24734 -12.03955 -11.91285 -11.63262 -11.31230 -11.28366 -10.76900 -10.72786 -10.52881 -10.49052 -9.36380 -8.94477 -7.96496 -5.35107 -1.10882 -0.66197 0.48368 1.25473 1.33734 1.44395 1.46582 1.55671 1.90305 2.16219 2.42911 2.44789 2.78709 2.83872 3.21511 3.25914 3.33582 3.54877 3.56554 3.77105 3.81441 3.85237 3.93083 4.02841 4.08251 4.43188 4.47490 4.59911 4.70856 4.74861 4.78088 4.85734 4.86939 4.97903 5.06656 5.30760 5.38444 5.48337 5.56578 5.63256 5.82769 5.88228 6.11414 6.41877 6.48546 6.76651 6.99030 7.29011 7.63217 8.30516 9.16020 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.002869 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.129044 B = 9758.705565 C =11339.075198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.054 4.054 3 Si 0.981 3.019 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.255 4.255 8 H 0.074 0.926 9 N -0.618 5.618 10 C 0.181 3.819 11 C -0.123 4.123 12 C 0.090 3.910 13 H 0.106 0.894 14 O -0.278 6.278 15 C 0.430 3.570 16 N -0.616 5.616 17 C 0.545 3.455 18 O -0.462 6.462 19 N -0.547 5.547 20 C 0.209 3.791 21 C -0.109 4.109 22 C -0.018 4.018 23 C -0.159 4.159 24 C 0.564 3.436 25 N -0.822 5.822 26 O -0.588 6.588 27 C 0.006 3.994 28 C -0.199 4.199 29 C 0.125 3.875 30 H 0.253 0.747 31 H 0.040 0.960 32 H 0.015 0.985 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.435 0.565 36 H 0.181 0.819 37 H 0.194 0.806 38 H 0.420 0.580 39 H 0.415 0.585 40 H 0.136 0.864 41 H 0.022 0.978 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -30.548 3.831 31.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.248 4.248 3 Si 0.808 3.192 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.346 5.346 10 C 0.057 3.943 11 C -0.161 4.161 12 C 0.034 3.966 13 H 0.123 0.877 14 O -0.178 6.178 15 C 0.233 3.767 16 N -0.361 5.361 17 C 0.240 3.760 18 O -0.269 6.269 19 N -0.279 5.279 20 C 0.082 3.918 21 C -0.127 4.127 22 C -0.039 4.039 23 C -0.163 4.163 24 C 0.350 3.650 25 N -0.388 5.388 26 O -0.469 6.469 27 C -0.015 4.015 28 C -0.204 4.204 29 C -0.001 4.001 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.299 0.701 36 H 0.198 0.802 37 H 0.211 0.789 38 H 0.254 0.746 39 H 0.248 0.752 40 H 0.153 0.847 41 H 0.040 0.960 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.429 -29.434 3.283 29.946 hybrid contribution -0.051 1.302 0.325 1.343 sum 4.377 -28.132 3.608 28.699 Atomic orbital electron populations 1.70101 1.06360 1.26054 1.56383 1.25743 0.96580 1.01197 1.01318 0.85040 0.77807 0.78761 0.77550 1.20981 1.21544 1.19454 1.19331 0.91421 0.83859 1.43793 0.90843 1.44607 1.14863 1.00527 1.74589 1.21186 0.85739 0.92067 0.95348 1.23096 0.99948 0.94747 0.98331 1.23470 0.94236 0.81407 0.97499 0.87658 1.86265 1.74575 1.20882 1.36077 1.20357 0.83914 0.86415 0.86031 1.67428 1.29333 1.34069 1.05260 1.19955 0.88223 0.82802 0.84983 1.84645 1.38532 1.88209 1.15563 1.68468 1.19853 1.24460 1.15103 1.19177 0.92393 0.93534 0.86684 1.20908 0.99440 0.95870 0.96531 1.21493 0.92973 0.97913 0.91478 1.19962 1.06138 0.95780 0.94400 1.18186 0.76678 0.83006 0.87140 1.43498 1.64199 1.15145 1.15922 1.90872 1.56383 1.40575 1.59075 1.21281 0.90006 0.97811 0.92407 1.18687 1.10130 0.94197 0.97410 1.21597 0.95472 0.85798 0.97196 0.93791 0.94111 0.96684 0.90156 0.87824 0.70119 0.80182 0.78948 0.74629 0.75219 0.84656 0.96027 0.95467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.82 10.92 21.65 0.24 -56.58 16 2 C -0.05 -3.12 5.38 84.86 0.46 -2.66 16 3 Si 0.98 46.46 29.56 68.60 2.03 48.49 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.26 -14.96 10.21 84.03 0.86 -14.10 16 8 H 0.07 4.21 7.85 -2.91 -0.02 4.18 16 9 N -0.62 -33.55 3.39 -691.96 -2.35 -35.89 16 10 C 0.18 9.02 5.36 86.86 0.47 9.49 16 11 C -0.12 -4.65 6.81 31.99 0.22 -4.43 16 12 C 0.09 3.42 3.25 31.79 0.10 3.53 16 13 H 0.11 3.95 7.00 -2.39 -0.02 3.93 16 14 O -0.28 -9.57 9.21 -85.00 -0.78 -10.35 16 15 C 0.43 13.57 7.57 85.46 0.65 14.22 16 16 N -0.62 -19.72 8.79 -425.19 -3.74 -23.46 16 17 C 0.55 15.18 8.65 180.56 1.56 16.74 16 18 O -0.46 -10.79 13.63 -86.69 -1.18 -11.97 16 19 N -0.55 -13.74 10.46 -307.40 -3.22 -16.96 16 20 C 0.21 4.64 6.62 40.24 0.27 4.91 16 21 C -0.11 -1.34 9.97 22.24 0.22 -1.11 16 22 C -0.02 -0.14 9.44 22.29 0.21 0.07 16 23 C -0.16 -2.65 5.87 -20.08 -0.12 -2.77 16 24 C 0.56 9.92 8.03 86.72 0.70 10.62 16 25 N -0.82 -5.00 8.82 -175.74 -1.55 -6.55 16 26 O -0.59 -16.94 17.14 -4.00 -0.07 -17.01 16 27 C 0.01 0.16 9.17 22.75 0.21 0.36 16 28 C -0.20 -5.21 5.75 -21.22 -0.12 -5.33 16 29 C 0.13 5.79 7.03 86.73 0.61 6.40 16 30 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.04 2.22 7.31 -2.39 -0.02 2.20 16 32 H 0.02 0.81 7.95 -2.39 -0.02 0.79 16 33 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.43 5.11 9.06 -74.06 -0.67 4.44 16 36 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.19 -0.61 6.34 -2.91 -0.02 -0.63 16 38 H 0.42 -0.96 6.81 -92.70 -0.63 -1.59 16 39 H 0.42 1.85 8.93 -92.71 -0.83 1.02 16 40 H 0.14 3.79 7.27 -2.91 -0.02 3.77 16 41 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.03 1.27 8.06 -2.39 -0.02 1.25 16 Total: -1.00 -84.23 359.75 -5.33 -89.57 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -1.00 Total: 4.79 kcal Atomic # 6 Polarization: 29.64 SS G_CDS: 6.28 Total: 35.93 kcal Atomic # 7 Polarization: -128.83 SS G_CDS: -10.61 Total: -139.44 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -2.03 Total: -39.33 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -84.23 -5.33 -89.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234520146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.122 kcal (2) G-P(sol) polarization free energy of solvation -84.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds