Wall clock time and date at job start Wed Apr 1 2020 03:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00170 * 2 1 4 4 O 1.20821 * 119.99675 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00202 * 179.97438 * 3 2 1 6 6 C 1.54260 * 112.30811 * 62.21514 * 5 3 2 7 7 N 1.48537 * 104.71758 * 144.88904 * 6 5 3 8 8 C 1.48546 * 104.22035 * 320.66628 * 7 6 5 9 9 C 1.54403 * 104.57826 * 39.86084 * 8 7 6 10 10 H 1.08999 * 111.72066 * 213.33272 * 9 8 7 11 11 C 1.53721 * 108.90057 * 89.50110 * 9 8 7 12 12 H 1.08995 * 112.58090 * 31.31252 * 11 9 8 13 13 C 1.53880 * 109.48748 * 158.06892 * 11 9 8 14 14 N 1.46891 * 107.71556 * 130.92186 * 13 11 9 15 15 S 1.65599 * 125.62000 * 182.35819 * 14 13 11 16 16 O 1.42101 * 106.40377 * 23.51121 * 15 14 13 17 17 O 1.42097 * 106.40213 * 156.43327 * 15 14 13 18 18 C 1.76204 * 107.21449 * 269.97093 * 15 14 13 19 19 H 1.08001 * 119.99988 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99841 * 180.02562 * 18 15 14 21 21 N 1.31518 * 119.99977 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00138 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47244 * 89.99420 * 22 20 18 24 24 H 1.48495 * 109.47104 * 209.99933 * 22 20 18 25 25 H 1.48503 * 109.46884 * 329.99688 * 22 20 18 26 26 C 1.47254 * 108.75726 * 2.35341 * 14 13 11 27 27 C 1.54600 * 105.39172 * 336.14719 * 26 14 13 28 28 H 1.09005 * 113.74045 * 158.24416 * 27 26 14 29 29 C 1.52525 * 112.17229 * 299.76755 * 5 3 2 30 30 H 1.08990 * 109.46900 * 59.99953 * 1 2 3 31 31 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46957 * 299.99757 * 1 2 3 33 33 H 1.09000 * 110.38998 * 26.08629 * 6 5 3 34 34 H 1.08996 * 110.39500 * 263.70366 * 6 5 3 35 35 H 1.00904 * 110.99681 * 201.10781 * 7 6 5 36 36 H 1.09001 * 110.41123 * 158.63152 * 8 7 6 37 37 H 1.08994 * 110.41556 * 280.96608 * 8 7 6 38 38 H 1.09000 * 109.81120 * 250.47424 * 13 11 9 39 39 H 1.08999 * 109.81064 * 11.36662 * 13 11 9 40 40 H 0.97000 * 119.99990 * 180.02562 * 21 20 18 41 41 H 1.08998 * 110.25856 * 217.16883 * 26 14 13 42 42 H 1.08997 * 110.33719 * 95.17428 * 26 14 13 43 43 H 1.09005 * 111.00420 * 95.71678 * 29 5 3 44 44 H 1.09005 * 109.10668 * 333.97475 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.1864 0.6409 -1.2616 7 7 5.3747 1.4804 -1.5607 8 6 4.9233 2.8666 -1.2755 9 6 4.0631 2.7404 0.0005 10 1 3.2429 3.4583 0.0067 11 6 4.9702 2.9038 1.2307 12 1 5.8125 3.5700 1.0441 13 6 4.1211 3.3278 2.4419 14 7 4.4737 2.4487 3.5647 15 16 3.7832 2.4821 5.0695 16 8 2.4993 3.0695 4.9090 17 8 3.9832 1.1924 5.6315 18 6 4.7243 3.6035 6.0502 19 1 5.5754 4.1121 5.6221 20 6 4.3740 3.8316 7.3641 21 7 3.3378 3.2118 7.8855 22 14 5.3711 5.0209 8.4037 23 1 4.8034 6.3870 8.2748 24 1 5.3219 4.5965 9.8258 25 1 6.7808 5.0246 7.9367 26 6 5.5422 1.5328 3.1315 27 6 5.4156 1.4531 1.5927 28 1 6.3297 1.1321 1.0932 29 6 4.1774 0.6049 1.2270 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.4792 0.6750 -2.0903 34 1 4.4884 -0.3871 -1.0612 35 1 5.6533 1.3821 -2.5255 36 1 5.7801 3.5155 -1.0938 37 1 4.3258 3.2496 -2.1027 38 1 4.3389 4.3638 2.7014 39 1 3.0622 3.2199 2.2067 40 1 3.0911 3.3726 8.8097 41 1 5.3968 0.5472 3.5737 42 1 6.5180 1.9305 3.4100 43 1 4.4729 -0.4207 1.0055 44 1 3.4527 0.6220 2.0412 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239110135.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:51 Heat of formation + Delta-G solvation = -160.461459 kcal Electronic energy + Delta-G solvation = -30314.486302 eV Core-core repulsion = 26165.196543 eV Total energy + Delta-G solvation = -4149.289759 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58425 -39.69748 -37.02755 -36.44694 -35.19444 -33.91975 -33.09081 -32.79045 -31.32209 -29.62740 -27.66419 -27.25485 -26.08366 -25.26659 -23.13636 -21.99946 -21.27260 -19.83652 -19.16538 -18.71684 -17.78873 -17.32028 -16.98681 -16.37293 -16.34908 -15.62588 -15.43725 -14.84129 -14.79166 -14.25943 -14.09351 -13.93672 -13.64218 -13.41221 -13.09377 -12.93400 -12.79806 -12.67374 -12.28515 -11.99332 -11.91534 -11.80013 -11.61574 -11.21310 -11.18355 -11.17119 -10.89901 -10.88948 -10.79813 -10.58235 -10.56685 -10.32748 -10.23262 -10.21923 -10.14479 -10.09882 -9.22098 -8.88546 -8.85069 -8.06416 -6.66515 -5.28538 2.11059 2.28184 2.57028 3.08883 3.15182 3.21991 3.97865 4.06249 4.08582 4.23021 4.46800 4.66332 4.67912 4.80264 4.87060 5.00636 5.00839 5.10795 5.17941 5.19209 5.29399 5.42920 5.49337 5.50497 5.58680 5.63509 5.65875 5.71481 5.84662 5.92130 5.98222 6.03476 6.15140 6.25875 6.30437 6.32147 6.38639 6.43040 6.49207 6.54422 6.96681 6.99236 7.36523 7.54968 7.66084 8.01700 8.91961 10.26976 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.003872 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.743987 B = 7229.058963 C = 8027.885369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.477 3.523 4 O -0.497 6.497 5 C -0.057 4.057 6 C 0.057 3.943 7 N -0.655 5.655 8 C 0.041 3.959 9 C -0.077 4.077 10 H 0.107 0.893 11 C -0.086 4.086 12 H 0.098 0.902 13 C 0.128 3.872 14 N -1.019 6.019 15 S 2.727 3.273 16 O -1.002 7.002 17 O -1.002 7.002 18 C -1.020 5.020 19 H 0.102 0.898 20 C 0.132 3.868 21 N -0.847 5.847 22 Si 0.921 3.079 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.262 1.262 26 C 0.124 3.876 27 C -0.085 4.085 28 H 0.110 0.890 29 C -0.097 4.097 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.097 0.903 35 H 0.338 0.662 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.291 0.709 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.105 -4.564 -20.130 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C 0.319 3.681 4 O -0.384 6.384 5 C -0.059 4.059 6 C -0.072 4.072 7 N -0.284 5.284 8 C -0.089 4.089 9 C -0.096 4.096 10 H 0.125 0.875 11 C -0.106 4.106 12 H 0.116 0.884 13 C 0.002 3.998 14 N -0.855 5.855 15 S 2.829 3.171 16 O -0.992 6.992 17 O -0.993 6.993 18 C -1.153 5.153 19 H 0.121 0.879 20 C -0.086 4.086 21 N -0.477 5.477 22 Si 0.745 3.255 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.186 1.186 26 C -0.002 4.002 27 C -0.105 4.105 28 H 0.128 0.872 29 C -0.134 4.134 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.154 0.846 36 H 0.109 0.891 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.309 -4.954 -19.025 19.794 hybrid contribution -0.067 1.356 -0.056 1.359 sum 2.242 -3.598 -19.080 19.546 Atomic orbital electron populations 1.23310 0.76261 1.03767 1.02739 1.86501 1.23457 1.33184 1.83953 1.23328 0.91306 0.81483 0.72017 1.90667 1.66702 1.36311 1.44694 1.21400 0.86490 0.98637 0.99359 1.22927 0.91459 0.98581 0.94279 1.63695 1.31614 1.05144 1.27957 1.23068 0.98508 0.91165 0.96112 1.22519 0.98095 0.93909 0.95103 0.87513 1.22807 0.97172 0.97668 0.92932 0.88351 1.21489 0.98556 0.94068 0.85700 1.59070 1.52109 1.45931 1.28398 1.00136 0.73157 0.74382 0.69428 1.93361 1.40893 1.79601 1.85382 1.93350 1.87008 1.43099 1.75804 1.30638 1.29977 1.45427 1.09282 0.87947 1.24768 0.93285 0.93724 0.96787 1.69900 1.23373 1.37753 1.16689 0.86158 0.80580 0.80306 0.78470 1.19192 1.19953 1.18628 1.21746 0.90978 0.94260 0.93206 1.23042 0.98042 0.94008 0.95388 0.87152 1.22034 0.97363 0.99103 0.94917 0.92052 0.87996 0.91460 0.94141 0.88505 0.84598 0.89123 0.94040 0.91999 0.91894 0.89905 0.90379 0.92032 0.89876 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.35 -4.61 10.55 -39.25 -0.41 -5.02 16 3 C 0.48 6.90 6.56 36.01 0.24 7.14 16 4 O -0.50 -8.45 15.23 -18.75 -0.29 -8.73 16 5 C -0.06 -0.70 0.93 -154.33 -0.14 -0.85 16 6 C 0.06 0.53 6.47 -2.26 -0.01 0.51 16 7 N -0.66 -5.40 7.32 -109.75 -0.80 -6.21 16 8 C 0.04 0.37 6.91 -2.18 -0.02 0.35 16 9 C -0.08 -0.93 2.66 -88.59 -0.24 -1.17 16 10 H 0.11 1.46 6.51 -51.93 -0.34 1.12 16 11 C -0.09 -1.14 3.34 -88.18 -0.29 -1.43 16 12 H 0.10 1.11 7.60 -51.93 -0.39 0.72 16 13 C 0.13 2.30 6.10 -3.37 -0.02 2.28 16 14 N -1.02 -21.39 3.32 -112.09 -0.37 -21.76 16 15 S 2.73 75.27 5.22 -107.50 -0.56 74.71 16 16 O -1.00 -30.60 17.60 -57.17 -1.01 -31.60 16 17 O -1.00 -29.94 17.33 -57.17 -0.99 -30.93 16 18 C -1.02 -28.94 9.75 30.60 0.30 -28.64 16 19 H 0.10 2.67 7.81 -52.49 -0.41 2.26 16 20 C 0.13 3.77 5.46 -17.82 -0.10 3.68 16 21 N -0.85 -25.50 13.19 55.43 0.73 -24.77 16 22 Si 0.92 20.99 29.54 -169.99 -5.02 15.96 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 26 C 0.12 2.10 6.34 -2.79 -0.02 2.08 16 27 C -0.09 -1.11 3.91 -87.40 -0.34 -1.45 16 28 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 29 C -0.10 -1.29 4.84 -26.20 -0.13 -1.42 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.04 0.35 7.95 -51.93 -0.41 -0.06 16 34 H 0.10 0.81 7.38 -51.93 -0.38 0.43 16 35 H 0.34 2.09 8.92 -39.29 -0.35 1.73 16 36 H 0.09 0.74 7.53 -51.93 -0.39 0.35 16 37 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.23 7.54 -51.93 -0.39 0.84 16 40 H 0.29 7.83 8.31 -40.82 -0.34 7.50 16 41 H 0.08 1.36 7.73 -51.93 -0.40 0.96 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.08 0.93 7.39 -51.93 -0.38 0.55 16 44 H 0.07 1.22 7.19 -51.93 -0.37 0.84 16 LS Contribution 363.27 15.07 5.47 5.47 Total: -1.00 -37.54 363.27 -9.28 -46.82 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.32 Total: 3.58 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 0.29 Total: -17.51 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.44 Total: -52.74 kcal Atomic # 8 Polarization: -73.59 SS G_CDS: -2.70 Total: -76.29 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 75.27 SS G_CDS: -0.56 Total: 74.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.54 -9.28 -46.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239110135.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.643 kcal (2) G-P(sol) polarization free energy of solvation -37.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds