Wall clock time and date at job start Wed Apr 1 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34827 * 116.99985 * 2 1 4 4 O 1.21547 * 119.99794 * 359.97438 * 3 2 1 5 5 C 1.47172 * 120.00133 * 180.02562 * 3 2 1 6 6 C 1.39516 * 120.44415 * 354.24101 * 5 3 2 7 7 C 1.37811 * 120.19584 * 179.70486 * 6 5 3 8 8 C 1.39758 * 121.15611 * 0.27114 * 7 6 5 9 9 C 1.48247 * 119.55349 * 179.97438 * 8 7 6 10 10 C 1.39722 * 121.14063 * 129.71724 * 9 8 7 11 11 C 1.39079 * 117.83032 * 179.78940 * 10 9 8 12 12 O 1.35791 * 120.01386 * 180.21683 * 11 10 9 13 13 C 1.42905 * 117.00198 * 180.28254 * 12 11 10 14 14 N 1.32255 * 119.97602 * 0.50357 * 11 10 9 15 15 N 1.28282 * 122.49655 * 359.73805 * 14 11 10 16 16 C 1.32125 * 122.31468 * 0.02562 * 15 14 11 17 17 O 1.35699 * 120.16985 * 179.97438 * 16 15 14 18 18 C 1.42904 * 116.99506 * 0.02562 * 17 16 15 19 19 C 1.38752 * 120.90159 * 359.97438 * 8 7 6 20 20 C 1.40563 * 119.72620 * 0.02562 * 19 8 7 21 21 C 1.40909 * 120.54600 * 179.97438 * 20 19 8 22 22 H 1.07997 * 119.99920 * 145.88994 * 21 20 19 23 23 C 1.40279 * 119.99873 * 325.88990 * 21 20 19 24 24 N 1.30624 * 120.00247 * 169.35195 * 23 21 20 25 25 Si 1.86798 * 120.00013 * 349.35331 * 23 21 20 26 26 H 1.48498 * 109.47472 * 89.26619 * 25 23 21 27 27 H 1.48506 * 109.47111 * 209.26492 * 25 23 21 28 28 H 1.48496 * 109.47131 * 329.26598 * 25 23 21 29 29 H 1.08998 * 109.47577 * 60.00252 * 1 2 3 30 30 H 1.09007 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47423 * 299.99858 * 1 2 3 32 32 H 1.07999 * 119.90113 * 359.97438 * 6 5 3 33 33 H 1.08005 * 119.42443 * 180.25631 * 7 6 5 34 34 H 1.08003 * 121.08846 * 0.03014 * 10 9 8 35 35 H 1.09002 * 109.46647 * 300.00394 * 13 12 11 36 36 H 1.09005 * 109.47075 * 59.99640 * 13 12 11 37 37 H 1.08992 * 109.47428 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.47753 * 60.00036 * 18 17 16 39 39 H 1.09004 * 109.46733 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.47104 * 299.99348 * 18 17 16 41 41 H 1.07993 * 120.13534 * 180.02562 * 19 8 7 42 42 H 0.97000 * 119.99930 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0640 1.2013 0.0000 4 8 1.4020 2.2207 -0.0005 5 6 3.5337 1.2784 -0.0006 6 6 4.3024 0.1203 0.1196 7 6 5.6783 0.1978 0.1123 8 6 6.3327 1.4267 -0.0086 9 6 7.8146 1.4689 -0.0118 10 6 8.5157 2.1591 -1.0039 11 6 9.9049 2.1574 -0.9378 12 8 10.6304 2.8179 -1.8766 13 6 12.0530 2.7687 -1.7503 14 7 10.5192 1.5075 0.0366 15 7 9.8816 0.8678 0.9475 16 6 8.5619 0.8111 0.9785 17 8 7.9319 0.1210 1.9625 18 6 8.7581 -0.5215 2.9354 19 6 5.6144 2.6080 -0.1259 20 6 4.2092 2.5725 -0.1228 21 6 3.4625 3.7617 -0.2403 22 1 2.5198 3.7576 -0.7672 23 6 3.9437 4.9510 0.3272 24 7 3.3668 6.0888 0.0465 25 14 5.4095 4.9075 1.4843 26 1 6.6631 5.0478 0.7008 27 1 5.3058 6.0251 2.4567 28 1 5.4248 3.6150 2.2154 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.8177 -0.8402 0.2142 33 1 6.2612 -0.7071 0.2020 34 1 7.9957 2.6804 -1.7941 35 1 12.3480 3.2012 -0.7942 36 1 12.3864 1.7320 -1.7983 37 1 12.5096 3.3355 -2.5615 38 1 9.3672 0.2250 3.4451 39 1 8.1300 -1.0364 3.6624 40 1 9.4073 -1.2439 2.4407 41 1 6.1327 3.5508 -0.2191 42 1 3.6998 6.9111 0.4386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240325979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:38 Heat of formation + Delta-G solvation = -93.102758 kcal Electronic energy + Delta-G solvation = -29826.757731 eV Core-core repulsion = 25544.944913 eV Total energy + Delta-G solvation = -4281.812818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.54937 -41.09016 -40.20885 -39.27778 -38.70554 -37.12383 -35.87636 -34.92988 -32.56986 -32.30307 -31.23356 -28.79376 -28.55545 -28.21869 -27.24831 -25.76195 -24.85585 -23.30741 -23.16673 -21.40991 -19.85596 -19.73303 -19.36629 -18.64786 -18.47096 -17.78345 -17.55845 -17.11839 -16.95896 -16.73184 -16.03697 -15.89122 -15.66356 -15.59140 -15.31551 -15.02139 -14.88344 -14.58733 -14.34130 -14.22862 -13.85799 -13.44152 -13.18044 -13.05835 -12.93092 -12.86720 -12.80147 -12.75371 -12.65441 -12.49446 -12.27450 -12.08687 -11.78472 -11.58399 -11.21439 -11.10649 -10.93649 -10.74259 -9.83318 -9.64194 -9.35928 -9.02604 -6.64103 -0.76834 -0.14212 0.16783 0.74463 1.16306 1.27366 1.37187 1.70885 1.80478 1.97458 2.04765 2.07619 2.32146 2.54411 2.89874 3.07639 3.31368 3.50356 3.80165 4.06025 4.18023 4.23683 4.30604 4.39713 4.42240 4.43421 4.44068 4.45121 4.47530 4.58245 4.64618 4.67530 4.75189 4.75783 4.80715 4.84506 5.14748 5.21289 5.50354 5.56868 5.69422 5.76990 5.92946 6.03373 6.06024 6.26092 6.52732 6.60405 7.19752 7.39639 8.01368 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.004032 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.772266 B = 6943.198140 C = 8213.930961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.501 3.499 4 O -0.544 6.544 5 C -0.258 4.258 6 C -0.005 4.005 7 C -0.206 4.206 8 C 0.016 3.984 9 C -0.027 4.027 10 C -0.097 4.097 11 C 0.240 3.760 12 O -0.306 6.306 13 C 0.029 3.971 14 N -0.280 5.280 15 N -0.273 5.273 16 C 0.248 3.752 17 O -0.297 6.297 18 C 0.027 3.973 19 C -0.223 4.223 20 C 0.112 3.888 21 C -0.424 4.424 22 H 0.078 0.922 23 C 0.051 3.949 24 N -0.819 5.819 25 Si 0.950 3.050 26 H -0.248 1.248 27 H -0.271 1.271 28 H -0.251 1.251 29 H 0.051 0.949 30 H 0.138 0.862 31 H 0.052 0.948 32 H 0.145 0.855 33 H 0.132 0.868 34 H 0.175 0.825 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.131 0.869 38 H 0.059 0.941 39 H 0.127 0.873 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.114 -10.748 1.331 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.285 6.285 3 C 0.351 3.649 4 O -0.436 6.436 5 C -0.261 4.261 6 C -0.023 4.023 7 C -0.225 4.225 8 C 0.015 3.985 9 C -0.039 4.039 10 C -0.125 4.125 11 C 0.052 3.948 12 O -0.210 6.210 13 C -0.065 4.065 14 N -0.137 5.137 15 N -0.130 5.130 16 C 0.059 3.941 17 O -0.201 6.201 18 C -0.067 4.067 19 C -0.242 4.242 20 C 0.108 3.892 21 C -0.451 4.451 22 H 0.096 0.904 23 C -0.168 4.168 24 N -0.444 5.444 25 Si 0.772 3.228 26 H -0.173 1.173 27 H -0.197 1.197 28 H -0.175 1.175 29 H 0.070 0.930 30 H 0.156 0.844 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.192 0.808 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.149 0.851 38 H 0.078 0.922 39 H 0.145 0.855 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.876 -10.494 1.847 16.713 hybrid contribution -1.113 1.031 -0.153 1.525 sum 11.763 -9.463 1.694 15.191 Atomic orbital electron populations 1.23407 0.75720 1.05250 1.01703 1.86528 1.24193 1.32468 1.85312 1.21316 0.89662 0.80916 0.72986 1.90804 1.67570 1.36700 1.48568 1.20019 0.87890 0.95090 1.23119 1.21125 0.93258 0.96657 0.91251 1.20484 0.93643 0.95886 1.12502 1.18217 0.88480 0.94254 0.97529 1.19310 0.94528 0.96593 0.93453 1.21776 0.91399 0.99298 1.00052 1.21153 0.90005 0.93264 0.90331 1.86280 1.22600 1.67379 1.44784 1.23269 0.75038 1.03747 1.04479 1.72522 1.30831 1.09208 1.01159 1.72644 1.05560 1.16775 1.18020 1.21391 0.89597 0.92970 0.90100 1.86394 1.34735 1.63051 1.35888 1.23283 0.96271 0.97171 0.90016 1.21115 0.92974 0.96878 1.13282 1.18506 0.91338 0.91552 0.87833 1.19888 1.06116 0.91343 1.27732 0.90390 1.26923 0.99166 0.93794 0.96912 1.69559 1.38686 1.00197 1.35917 0.85759 0.78414 0.79567 0.79048 1.17311 1.19746 1.17514 0.93026 0.84447 0.92922 0.83757 0.84986 0.80758 0.92129 0.91715 0.85120 0.92191 0.85496 0.91322 0.87048 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 10.57 113.37 1.20 2.12 16 2 O -0.37 -13.63 9.84 -57.39 -0.56 -14.20 16 3 C 0.50 23.25 7.86 70.17 0.55 23.80 16 4 O -0.54 -29.20 13.57 19.68 0.27 -28.93 16 5 C -0.26 -11.91 6.07 -18.47 -0.11 -12.02 16 6 C 0.00 -0.18 9.60 22.48 0.22 0.03 16 7 C -0.21 -7.40 8.77 22.54 0.20 -7.20 16 8 C 0.02 0.63 5.34 -20.13 -0.11 0.52 16 9 C -0.03 -0.94 5.48 -19.72 -0.11 -1.05 16 10 C -0.10 -3.02 9.67 22.83 0.22 -2.80 16 11 C 0.24 7.07 7.57 84.83 0.64 7.72 16 12 O -0.31 -7.74 10.49 -91.21 -0.96 -8.70 16 13 C 0.03 0.50 10.40 113.37 1.18 1.68 16 14 N -0.28 -8.50 10.37 -170.32 -1.77 -10.27 16 15 N -0.27 -8.52 10.39 -169.68 -1.76 -10.29 16 16 C 0.25 8.02 7.49 85.18 0.64 8.66 16 17 O -0.30 -8.85 8.96 -90.19 -0.81 -9.66 16 18 C 0.03 0.55 10.40 113.37 1.18 1.73 16 19 C -0.22 -9.94 6.56 22.96 0.15 -9.79 16 20 C 0.11 5.60 5.23 -19.91 -0.10 5.49 16 21 C -0.42 -23.77 8.36 23.42 0.20 -23.58 16 22 H 0.08 4.94 6.22 -2.91 -0.02 4.92 16 23 C 0.05 2.67 5.48 85.37 0.47 3.14 16 24 N -0.82 -44.16 13.92 21.88 0.30 -43.86 16 25 Si 0.95 41.79 24.47 68.60 1.68 43.47 16 26 H -0.25 -10.12 6.57 99.48 0.65 -9.46 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.25 -11.45 6.84 99.48 0.68 -10.77 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.14 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.14 4.54 7.63 -2.91 -0.02 4.52 16 33 H 0.13 4.07 7.67 -2.91 -0.02 4.04 16 34 H 0.17 5.02 8.06 -2.91 -0.02 4.99 16 35 H 0.06 1.06 8.11 -2.39 -0.02 1.04 16 36 H 0.06 1.07 8.11 -2.38 -0.02 1.05 16 37 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.21 8.11 -2.39 -0.02 1.20 16 39 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 41 H 0.11 4.92 4.62 -2.91 -0.01 4.90 16 42 H 0.30 14.40 8.29 -92.71 -0.77 13.63 16 Total: -1.00 -68.20 362.99 3.79 -64.41 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.00 Total: 19.57 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 6.40 Total: -1.55 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -3.22 Total: -64.41 kcal Atomic # 8 Polarization: -59.43 SS G_CDS: -2.06 Total: -61.49 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.68 Total: 43.47 kcal Total: -68.20 3.79 -64.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240325979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.693 kcal (2) G-P(sol) polarization free energy of solvation -68.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds