Wall clock time and date at job start Wed Apr 1 2020 01:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47244 * 2 1 4 4 C 1.53004 * 109.46754 * 119.99966 * 2 1 3 5 5 N 1.46494 * 109.46900 * 175.00263 * 4 2 1 6 6 C 1.34779 * 120.00158 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00078 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00333 * 179.97438 * 6 5 4 9 9 S 1.80992 * 109.47308 * 179.97438 * 8 6 5 10 10 C 1.76199 * 100.00161 * 179.97438 * 9 8 6 11 11 H 1.07997 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.38797 * 120.00096 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00143 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00061 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46629 * 90.00214 * 14 12 10 16 16 H 1.48499 * 109.47195 * 210.00114 * 14 12 10 17 17 H 1.48494 * 109.47131 * 330.00657 * 14 12 10 18 18 N 1.46899 * 109.47079 * 239.99495 * 2 1 3 19 19 C 1.46904 * 110.99867 * 85.00282 * 18 2 1 20 20 C 1.50698 * 109.46946 * 179.97438 * 19 18 2 21 21 C 1.38212 * 119.97354 * 90.00289 * 20 19 18 22 22 C 1.38475 * 120.02434 * 179.97438 * 21 20 19 23 23 F 1.35106 * 120.00992 * 180.02562 * 22 21 20 24 24 C 1.38410 * 119.97434 * 359.97438 * 22 21 20 25 25 C 1.38422 * 119.95213 * 359.97438 * 24 22 21 26 26 F 1.35099 * 120.01295 * 179.97438 * 25 24 22 27 27 C 1.38208 * 119.97702 * 269.97645 * 20 19 18 28 28 H 1.09006 * 109.47066 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47398 * 300.00057 * 1 2 3 30 30 H 1.09002 * 109.46942 * 60.00672 * 1 2 3 31 31 H 1.09000 * 109.46976 * 294.99495 * 4 2 1 32 32 H 1.08992 * 109.47457 * 54.99786 * 4 2 1 33 33 H 0.97002 * 120.00386 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.46745 * 300.00466 * 8 6 5 35 35 H 1.09000 * 109.46961 * 59.99620 * 8 6 5 36 36 H 0.97005 * 119.99937 * 179.97438 * 13 12 10 37 37 H 1.00899 * 111.00254 * 208.95344 * 18 2 1 38 38 H 1.08997 * 109.46739 * 59.99947 * 19 18 2 39 39 H 1.08997 * 109.46957 * 299.99785 * 19 18 2 40 40 H 1.08003 * 119.98937 * 0.24784 * 21 20 19 41 41 H 1.08003 * 120.02389 * 179.97438 * 24 22 21 42 42 H 1.08000 * 119.98664 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4283 2.1913 7 8 3.5700 -1.8833 3.1401 8 6 5.6749 -1.5369 2.1308 9 16 6.2783 -2.3886 3.6094 10 6 8.0099 -2.3773 3.2839 11 1 8.3861 -1.9254 2.3780 12 6 8.8906 -2.9481 4.1922 13 7 8.4322 -3.4984 5.2966 14 14 10.7264 -2.9367 3.8467 15 1 11.3293 -1.7042 4.4149 16 1 11.3550 -4.1284 4.4710 17 1 10.9542 -2.9681 2.3797 18 7 2.0197 -0.6926 -1.1994 19 6 2.0825 0.2225 -2.3469 20 6 2.5886 -0.5218 -3.5556 21 6 1.6961 -1.1522 -4.4020 22 6 2.1599 -1.8359 -5.5133 23 9 1.2872 -2.4517 -6.3407 24 6 3.5178 -1.8873 -5.7766 25 6 4.4106 -1.2546 -4.9289 26 9 5.7363 -1.3044 -5.1845 27 6 3.9447 -0.5729 -3.8174 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.7516 -0.1583 2.1370 32 1 1.6054 -1.7197 1.2953 33 1 3.9824 -0.4628 0.4317 34 1 5.9629 -2.1004 1.2433 35 1 6.1098 -0.5385 2.0841 36 1 9.0477 -3.8976 5.9312 37 1 2.9173 -1.1206 -1.0287 38 1 2.7589 1.0460 -2.1182 39 1 1.0872 0.6161 -2.5526 40 1 0.6363 -1.1079 -4.1989 41 1 3.8804 -2.4207 -6.6429 42 1 4.6411 -0.0791 -3.1558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265754289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:59 Heat of formation + Delta-G solvation = -105.563256 kcal Electronic energy + Delta-G solvation = -26257.197728 eV Core-core repulsion = 21999.201018 eV Total energy + Delta-G solvation = -4257.996710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.41119 -49.37388 -39.85279 -39.28394 -37.47006 -34.27922 -32.62941 -32.44366 -30.79268 -30.28742 -29.36730 -26.43530 -25.61424 -25.20264 -23.31130 -22.11201 -20.99930 -20.48286 -18.36589 -17.87904 -17.66628 -16.87108 -16.65851 -16.45849 -16.23146 -16.20952 -16.06933 -15.68855 -15.28320 -14.89252 -14.81968 -14.76365 -14.36550 -13.96862 -13.57514 -13.33361 -13.04367 -12.95322 -12.74710 -12.62945 -12.42551 -12.39962 -12.29488 -12.03365 -11.78508 -11.62116 -11.22348 -11.07731 -11.04168 -10.77382 -9.83856 -9.49557 -9.47842 -9.20786 -9.09246 -8.99379 -8.93046 -8.26409 -6.52351 -6.23379 -3.94258 0.45790 0.51685 2.80852 2.96820 3.03294 3.21290 3.26418 3.30257 3.36734 3.62098 3.77338 3.88321 4.04589 4.18647 4.33306 4.40060 4.46380 4.63747 4.74163 4.85109 4.91769 5.03802 5.09233 5.11906 5.25645 5.34521 5.41418 5.47670 5.50941 5.53075 5.53221 5.60357 5.79044 5.80856 5.84221 5.95573 6.08810 6.28769 6.46284 6.50720 6.86352 7.55185 7.58203 8.33356 8.53005 9.22013 10.84017 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.002406 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.108336 B =11635.534258 C =13933.895344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 H 0.054 0.946 4 C 0.118 3.882 5 N -0.743 5.743 6 C 0.533 3.467 7 O -0.513 6.513 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.681 5.681 19 C 0.095 3.905 20 C -0.026 4.026 21 C -0.141 4.141 22 C 0.130 3.870 23 F -0.131 7.131 24 C -0.193 4.193 25 C 0.134 3.866 26 F -0.129 7.129 27 C -0.159 4.159 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.392 0.608 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.347 0.653 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.346 9.892 -22.386 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 H 0.072 0.928 4 C -0.007 4.007 5 N -0.399 5.399 6 C 0.319 3.681 7 O -0.386 6.386 8 C -0.305 4.305 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.316 5.316 19 C -0.033 4.033 20 C -0.027 4.027 21 C -0.161 4.161 22 C 0.110 3.890 23 F -0.109 7.109 24 C -0.213 4.213 25 C 0.114 3.886 26 F -0.107 7.107 27 C -0.178 4.178 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.226 0.774 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.168 0.832 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.925 8.758 -20.800 28.210 hybrid contribution 3.056 1.035 -1.770 3.680 sum -13.869 9.793 -22.570 28.243 Atomic orbital electron populations 1.21742 0.93160 1.03082 1.01698 1.21817 0.97000 0.96133 0.88590 0.92839 1.21521 0.80425 1.01768 0.96954 1.46047 1.07136 1.62290 1.24445 1.20301 0.89499 0.76662 0.81600 1.90713 1.69860 1.45639 1.32419 1.23538 0.93469 1.05656 1.07839 1.85413 1.04653 1.73220 1.19933 1.22858 0.91494 1.44444 1.09619 0.90938 1.24994 0.99612 0.94509 0.94463 1.70017 1.35427 1.35472 1.09340 0.86168 0.82890 0.77861 0.78587 1.20275 1.20725 1.19671 1.60547 1.34387 1.32707 1.03938 1.20991 1.01678 0.92858 0.87775 1.19396 0.91682 0.96139 0.95442 1.21078 1.01701 0.99297 0.93975 1.17269 0.86370 0.95415 0.89911 1.91547 1.68387 1.80502 1.70502 1.21069 0.91906 1.05178 1.03103 1.17230 0.77726 0.98448 0.95189 1.91565 1.30798 1.94586 1.93774 1.21159 0.96341 1.02427 0.97878 0.91390 0.91955 0.92368 0.90717 0.90489 0.77437 0.89196 0.89293 0.92156 0.83181 0.93261 0.89121 0.83764 0.83416 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.42 37.16 0.35 -0.53 16 2 C 0.07 0.53 2.81 -67.71 -0.19 0.34 16 3 H 0.05 0.35 7.80 -51.93 -0.40 -0.06 16 4 C 0.12 1.23 5.31 -4.04 -0.02 1.21 16 5 N -0.74 -9.02 4.99 -60.30 -0.30 -9.32 16 6 C 0.53 9.54 7.85 -10.98 -0.09 9.45 16 7 O -0.51 -11.37 15.86 5.56 0.09 -11.28 16 8 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 14 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 18 N -0.68 -4.85 6.29 -107.99 -0.68 -5.53 16 19 C 0.10 0.53 5.61 -4.97 -0.03 0.50 16 20 C -0.03 -0.17 5.39 -104.64 -0.56 -0.73 16 21 C -0.14 -0.98 9.68 -39.50 -0.38 -1.37 16 22 C 0.13 1.03 7.30 -39.43 -0.29 0.75 16 23 F -0.13 -1.14 17.27 2.25 0.04 -1.11 16 24 C -0.19 -1.52 10.01 -39.45 -0.39 -1.91 16 25 C 0.13 1.12 7.30 -39.43 -0.29 0.83 16 26 F -0.13 -1.25 17.27 2.25 0.04 -1.21 16 27 C -0.16 -1.14 9.68 -39.51 -0.38 -1.52 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.31 7.45 -51.93 -0.39 -0.07 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.39 3.60 7.37 -40.82 -0.30 3.30 16 34 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 35 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.35 2.73 6.70 -39.29 -0.26 2.47 16 38 H 0.05 0.23 8.00 -51.93 -0.42 -0.19 16 39 H 0.09 0.42 7.38 -51.93 -0.38 0.04 16 40 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -34.07 381.68 -8.92 -42.99 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.50 Total: 1.16 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.86 Total: -8.63 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.25 Total: -40.17 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.08 Total: -2.32 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.07 -8.92 -42.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265754289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.571 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds