Wall clock time and date at job start Wed Apr 1 2020 01:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47244 * 2 1 4 4 C 1.53004 * 109.46754 * 119.99966 * 2 1 3 5 5 N 1.46494 * 109.46900 * 175.00263 * 4 2 1 6 6 C 1.34779 * 120.00158 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00078 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00333 * 179.97438 * 6 5 4 9 9 S 1.80992 * 109.47308 * 179.97438 * 8 6 5 10 10 C 1.76199 * 100.00161 * 179.97438 * 9 8 6 11 11 H 1.07997 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.38797 * 120.00096 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00143 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00061 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46629 * 90.00214 * 14 12 10 16 16 H 1.48499 * 109.47195 * 210.00114 * 14 12 10 17 17 H 1.48494 * 109.47131 * 330.00657 * 14 12 10 18 18 N 1.46899 * 109.47079 * 239.99495 * 2 1 3 19 19 C 1.46904 * 110.99867 * 85.00282 * 18 2 1 20 20 C 1.50698 * 109.46946 * 179.97438 * 19 18 2 21 21 C 1.38212 * 119.97354 * 90.00289 * 20 19 18 22 22 C 1.38475 * 120.02434 * 179.97438 * 21 20 19 23 23 F 1.35106 * 120.00992 * 180.02562 * 22 21 20 24 24 C 1.38410 * 119.97434 * 359.97438 * 22 21 20 25 25 C 1.38422 * 119.95213 * 359.97438 * 24 22 21 26 26 F 1.35099 * 120.01295 * 179.97438 * 25 24 22 27 27 C 1.38208 * 119.97702 * 269.97645 * 20 19 18 28 28 H 1.09006 * 109.47066 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47398 * 300.00057 * 1 2 3 30 30 H 1.09002 * 109.46942 * 60.00672 * 1 2 3 31 31 H 1.09000 * 109.46976 * 294.99495 * 4 2 1 32 32 H 1.08992 * 109.47457 * 54.99786 * 4 2 1 33 33 H 0.97002 * 120.00386 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.46745 * 300.00466 * 8 6 5 35 35 H 1.09000 * 109.46961 * 59.99620 * 8 6 5 36 36 H 0.97005 * 119.99937 * 179.97438 * 13 12 10 37 37 H 1.00899 * 111.00254 * 208.95344 * 18 2 1 38 38 H 1.08997 * 109.46739 * 59.99947 * 19 18 2 39 39 H 1.08997 * 109.46957 * 299.99785 * 19 18 2 40 40 H 1.08003 * 119.98937 * 0.24784 * 21 20 19 41 41 H 1.08003 * 120.02389 * 179.97438 * 24 22 21 42 42 H 1.08000 * 119.98664 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4283 2.1913 7 8 3.5700 -1.8833 3.1401 8 6 5.6749 -1.5369 2.1308 9 16 6.2783 -2.3886 3.6094 10 6 8.0099 -2.3773 3.2839 11 1 8.3861 -1.9254 2.3780 12 6 8.8906 -2.9481 4.1922 13 7 8.4322 -3.4984 5.2966 14 14 10.7264 -2.9367 3.8467 15 1 11.3293 -1.7042 4.4149 16 1 11.3550 -4.1284 4.4710 17 1 10.9542 -2.9681 2.3797 18 7 2.0197 -0.6926 -1.1994 19 6 2.0825 0.2225 -2.3469 20 6 2.5886 -0.5218 -3.5556 21 6 1.6961 -1.1522 -4.4020 22 6 2.1599 -1.8359 -5.5133 23 9 1.2872 -2.4517 -6.3407 24 6 3.5178 -1.8873 -5.7766 25 6 4.4106 -1.2546 -4.9289 26 9 5.7363 -1.3044 -5.1845 27 6 3.9447 -0.5729 -3.8174 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.7516 -0.1583 2.1370 32 1 1.6054 -1.7197 1.2953 33 1 3.9824 -0.4628 0.4317 34 1 5.9629 -2.1004 1.2433 35 1 6.1098 -0.5385 2.0841 36 1 9.0477 -3.8976 5.9312 37 1 2.9173 -1.1206 -1.0287 38 1 2.7589 1.0460 -2.1182 39 1 1.0872 0.6161 -2.5526 40 1 0.6363 -1.1079 -4.1989 41 1 3.8804 -2.4207 -6.6429 42 1 4.6411 -0.0791 -3.1558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265754289.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:58 Heat of formation + Delta-G solvation = -128.422906 kcal Electronic energy + Delta-G solvation = -26258.188996 eV Core-core repulsion = 21999.201018 eV Total energy + Delta-G solvation = -4258.987979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.05065 -50.02704 -40.81581 -40.15493 -38.27909 -35.25953 -34.58177 -33.40480 -31.35001 -31.20459 -30.44443 -27.74195 -27.04656 -26.06662 -23.88706 -22.66344 -21.82694 -21.63258 -19.87380 -18.91575 -18.27342 -17.88906 -17.43468 -17.39475 -17.13762 -16.95284 -16.87820 -16.75025 -16.34673 -16.25247 -15.96112 -15.82356 -15.38852 -14.91702 -14.63664 -14.44877 -14.23077 -13.99738 -13.64657 -13.29270 -13.22867 -13.16496 -12.97849 -12.95193 -12.90240 -12.87009 -12.63407 -12.51499 -12.17966 -11.85389 -11.70359 -11.14226 -10.97936 -10.27257 -10.17266 -10.04867 -9.78800 -9.43206 -8.66370 -8.34647 -6.12462 -0.09801 -0.05642 1.26970 1.42405 1.47111 1.57370 1.60284 2.21719 2.26666 2.29236 2.79265 2.99661 3.18443 3.32462 3.33219 3.51984 3.72035 3.80448 3.94218 3.96597 4.11470 4.19951 4.29433 4.35401 4.39471 4.50588 4.54396 4.67089 4.77531 4.80375 4.87949 4.96215 4.98985 4.99456 5.08053 5.28736 5.34074 5.42109 5.49314 5.73087 5.98151 6.19897 6.28455 6.42389 7.06920 7.21167 8.74496 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.002406 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.108336 B =11635.534258 C =13933.895344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.072 0.928 4 C 0.117 3.883 5 N -0.714 5.714 6 C 0.535 3.465 7 O -0.563 6.563 8 C -0.130 4.130 9 S -0.152 6.152 10 C -0.545 4.545 11 H 0.083 0.917 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.998 3.002 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.258 1.258 18 N -0.690 5.690 19 C 0.098 3.902 20 C -0.024 4.024 21 C -0.138 4.138 22 C 0.115 3.885 23 F -0.139 7.139 24 C -0.197 4.197 25 C 0.114 3.886 26 F -0.141 7.141 27 C -0.156 4.156 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.411 0.589 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.271 0.729 37 H 0.342 0.658 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.197 11.729 -24.213 30.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 H 0.090 0.910 4 C -0.007 4.007 5 N -0.369 5.369 6 C 0.321 3.679 7 O -0.441 6.441 8 C -0.282 4.282 9 S 0.075 5.925 10 C -0.693 4.693 11 H 0.101 0.899 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.819 3.181 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.182 1.182 18 N -0.324 5.324 19 C -0.030 4.030 20 C -0.025 4.025 21 C -0.157 4.157 22 C 0.096 3.904 23 F -0.117 7.117 24 C -0.217 4.217 25 C 0.095 3.905 26 F -0.119 7.119 27 C -0.175 4.175 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.248 0.752 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.163 0.837 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.176 0.824 41 H 0.172 0.828 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.796 10.633 -22.693 30.169 hybrid contribution 2.880 0.510 -1.292 3.197 sum -13.917 11.143 -23.985 29.885 Atomic orbital electron populations 1.21740 0.92342 1.02667 1.02762 1.21728 0.97437 0.96283 0.86791 0.91008 1.21656 0.78755 1.01391 0.98904 1.45735 1.07986 1.59990 1.23216 1.20033 0.88841 0.76901 0.82115 1.90704 1.70433 1.48238 1.34725 1.23378 0.94754 1.05834 1.04205 1.85597 1.05851 1.75284 1.25728 1.23196 0.91671 1.44395 1.10034 0.89884 1.26121 1.05172 0.93831 0.94057 1.70183 1.37369 1.36629 1.10605 0.84966 0.75934 0.78091 0.79074 1.19278 1.20404 1.18197 1.60556 1.34167 1.33428 1.04288 1.21064 1.02933 0.92618 0.86391 1.19523 0.91297 0.95935 0.95750 1.21301 1.02597 0.98431 0.93367 1.17416 0.86328 0.96190 0.90475 1.91526 1.68565 1.80784 1.70844 1.21184 0.92039 1.05120 1.03356 1.17427 0.77336 0.99625 0.96140 1.91532 1.31599 1.94810 1.93965 1.21374 0.96970 1.01741 0.97430 0.92579 0.91494 0.90725 0.91202 0.92126 0.75211 0.87217 0.87109 0.92014 0.83746 0.91589 0.87701 0.82391 0.82838 0.82534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.42 71.98 0.68 -0.67 16 2 C 0.09 0.97 2.81 44.92 0.13 1.10 16 3 H 0.07 0.60 7.80 -2.39 -0.02 0.59 16 4 C 0.12 2.25 5.31 86.38 0.46 2.71 16 5 N -0.71 -15.79 4.99 -463.07 -2.31 -18.10 16 6 C 0.54 18.70 7.85 87.66 0.69 19.38 16 7 O -0.56 -25.38 15.86 -3.02 -0.05 -25.43 16 8 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 9 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 10 C -0.55 -30.79 9.50 67.95 0.65 -30.14 16 11 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 12 C 0.01 0.73 5.49 84.86 0.47 1.20 16 13 N -0.91 -55.82 13.22 21.65 0.29 -55.54 16 14 Si 1.00 43.34 29.55 68.60 2.03 45.36 16 15 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 18 N -0.69 -7.63 6.29 -495.56 -3.12 -10.75 16 19 C 0.10 0.71 5.61 85.56 0.48 1.19 16 20 C -0.02 -0.26 5.39 -19.88 -0.11 -0.36 16 21 C -0.14 -1.63 9.68 22.32 0.22 -1.42 16 22 C 0.12 1.72 7.30 22.37 0.16 1.88 16 23 F -0.14 -2.34 17.27 44.97 0.78 -1.56 16 24 C -0.20 -2.98 10.01 22.35 0.22 -2.76 16 25 C 0.11 1.80 7.30 22.37 0.16 1.96 16 26 F -0.14 -2.64 17.27 44.97 0.78 -1.86 16 27 C -0.16 -1.90 9.68 22.32 0.22 -1.69 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.52 7.45 -2.39 -0.02 0.51 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.41 6.16 7.37 -92.71 -0.68 5.48 16 34 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 35 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 36 H 0.27 15.41 8.31 -92.70 -0.77 14.63 16 37 H 0.34 4.32 6.70 -89.69 -0.60 3.72 16 38 H 0.07 0.31 8.00 -2.39 -0.02 0.29 16 39 H 0.10 0.51 7.38 -2.39 -0.02 0.50 16 40 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 41 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -76.49 381.68 1.87 -74.62 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -0.22 Total: 14.86 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 4.86 Total: -12.13 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -5.14 Total: -84.39 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 1.55 Total: -3.42 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -76.49 1.87 -74.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265754289.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.798 kcal (2) G-P(sol) polarization free energy of solvation -76.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds