Wall clock time and date at job start Wed Apr 1 2020 01:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46887 * 2 1 4 4 C 1.52999 * 109.47200 * 239.99680 * 2 1 3 5 5 N 1.46497 * 109.46992 * 184.99961 * 4 2 1 6 6 C 1.34777 * 119.99525 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00463 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72583 * 6 5 4 9 9 S 1.80997 * 109.47151 * 180.27780 * 8 6 5 10 10 C 1.76196 * 100.00314 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00626 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99674 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00584 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46793 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47282 * 119.99523 * 14 12 10 17 17 H 1.48500 * 109.47237 * 240.00020 * 14 12 10 18 18 N 1.46902 * 109.47150 * 119.99712 * 2 1 3 19 19 C 1.46906 * 111.00123 * 275.00224 * 18 2 1 20 20 C 1.50696 * 109.47341 * 180.02562 * 19 18 2 21 21 C 1.38214 * 119.97070 * 269.72315 * 20 19 18 22 22 C 1.38476 * 120.02353 * 179.76669 * 21 20 19 23 23 F 1.35093 * 120.01272 * 180.26905 * 22 21 20 24 24 C 1.38419 * 119.97117 * 0.48540 * 22 21 20 25 25 C 1.38410 * 119.95395 * 359.76884 * 24 22 21 26 26 F 1.35101 * 120.01650 * 179.97438 * 25 24 22 27 27 C 1.38203 * 119.97680 * 89.99328 * 20 19 18 28 28 H 1.08994 * 109.47308 * 60.00286 * 1 2 3 29 29 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46990 * 300.00107 * 1 2 3 31 31 H 1.08995 * 109.46838 * 64.99849 * 4 2 1 32 32 H 1.09001 * 109.46617 * 305.00184 * 4 2 1 33 33 H 0.97000 * 120.00580 * 0.02562 * 5 4 2 34 34 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 35 35 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 36 36 H 0.97003 * 120.00297 * 179.97438 * 13 12 10 37 37 H 1.00906 * 111.00106 * 38.95414 * 18 2 1 38 38 H 1.09002 * 109.46553 * 300.00180 * 19 18 2 39 39 H 1.08997 * 109.47248 * 59.99851 * 19 18 2 40 40 H 1.08000 * 119.98619 * 359.97438 * 21 20 19 41 41 H 1.08003 * 120.02279 * 179.78688 * 24 22 21 42 42 H 1.08002 * 119.98962 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1729 -1.4293 -2.1906 7 8 3.5699 -1.8843 -3.1394 8 6 5.6753 -1.5319 -2.1332 9 16 6.2792 -2.3800 -3.6138 10 6 8.0115 -2.3606 -3.2925 11 1 8.3877 -1.9082 -2.3869 12 6 8.8926 -2.9277 -4.2028 13 7 8.4340 -3.4805 -5.3059 14 14 10.7291 -2.9078 -3.8619 15 1 10.9843 -2.2328 -2.5640 16 1 11.2369 -4.3021 -3.8035 17 1 11.4261 -2.1721 -4.9473 18 7 2.0197 -0.6924 1.1995 19 6 2.0824 0.2227 2.3470 20 6 2.5885 -0.5213 3.5558 21 6 1.6956 -1.1469 4.4053 22 6 2.1597 -1.8350 5.5137 23 9 1.2871 -2.4510 6.3409 24 6 3.5178 -1.8875 5.7764 25 6 4.4106 -1.2562 4.9279 26 9 5.7363 -1.3062 5.1833 27 6 3.9446 -0.5728 3.8173 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7516 -0.1584 -2.1369 32 1 1.6053 -1.7198 -1.2950 33 1 3.9824 -0.4628 -0.4315 34 1 6.1064 -0.5318 -2.0862 35 1 5.9675 -2.0955 -1.2471 36 1 9.0497 -3.8765 -5.9423 37 1 1.4496 -1.4979 1.4101 38 1 2.7588 1.0463 2.1182 39 1 1.0871 0.6164 2.5526 40 1 0.6357 -1.1020 4.2026 41 1 3.8804 -2.4210 6.6426 42 1 4.6411 -0.0802 3.1550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265754290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:02 Heat of formation + Delta-G solvation = -132.529115 kcal Electronic energy + Delta-G solvation = -26233.168363 eV Core-core repulsion = 21974.002325 eV Total energy + Delta-G solvation = -4259.166038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.04551 -50.01910 -40.61619 -40.13726 -38.21139 -35.24216 -34.56723 -33.35454 -31.33115 -31.17121 -30.22536 -27.71603 -26.84145 -26.09893 -23.87906 -22.63335 -21.99265 -21.54787 -19.78466 -18.88404 -18.22887 -17.66777 -17.38268 -17.35051 -17.09368 -16.86766 -16.83243 -16.74595 -16.34035 -16.14105 -15.96536 -15.53344 -15.34110 -14.99984 -14.54589 -14.40251 -14.20571 -13.87482 -13.72997 -13.56366 -13.16558 -13.13860 -12.95272 -12.92995 -12.89635 -12.78082 -12.63095 -12.52770 -12.18324 -11.83023 -11.67866 -11.14420 -10.87974 -10.24378 -10.04980 -9.94445 -9.77306 -9.35554 -8.64075 -8.33297 -6.10669 -0.07873 -0.04185 1.29960 1.42121 1.49443 1.60938 1.71620 2.26978 2.28612 2.43228 2.80825 3.00740 3.23791 3.34719 3.36889 3.56540 3.81592 3.90293 3.95588 4.05570 4.14266 4.19704 4.33491 4.35655 4.45525 4.55031 4.55702 4.70185 4.78973 4.82148 4.89060 4.94265 4.97590 5.01581 5.03436 5.31931 5.32834 5.43678 5.58181 5.74729 6.01509 6.21721 6.41390 6.67400 7.08176 7.38009 8.76211 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.002401 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.831412 B =11658.216278 C =13955.091276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.087 3.913 3 H 0.102 0.898 4 C 0.129 3.871 5 N -0.696 5.696 6 C 0.530 3.470 7 O -0.573 6.573 8 C -0.128 4.128 9 S -0.153 6.153 10 C -0.544 4.544 11 H 0.081 0.919 12 C 0.012 3.988 13 N -0.912 5.912 14 Si 0.999 3.001 15 H -0.257 1.257 16 H -0.274 1.274 17 H -0.273 1.273 18 N -0.689 5.689 19 C 0.101 3.899 20 C -0.022 4.022 21 C -0.150 4.150 22 C 0.116 3.884 23 F -0.139 7.139 24 C -0.199 4.199 25 C 0.111 3.889 26 F -0.142 7.142 27 C -0.142 4.142 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.417 0.583 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.271 0.729 37 H 0.349 0.651 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.154 11.423 24.928 32.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.023 4.023 3 H 0.120 0.880 4 C 0.005 3.995 5 N -0.349 5.349 6 C 0.315 3.685 7 O -0.452 6.452 8 C -0.279 4.279 9 S 0.074 5.926 10 C -0.692 4.692 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.820 3.180 15 H -0.181 1.181 16 H -0.200 1.200 17 H -0.199 1.199 18 N -0.321 5.321 19 C -0.027 4.027 20 C -0.023 4.023 21 C -0.169 4.169 22 C 0.096 3.904 23 F -0.117 7.117 24 C -0.219 4.219 25 C 0.092 3.908 26 F -0.121 7.121 27 C -0.162 4.162 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.254 0.746 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.169 0.831 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.179 0.821 41 H 0.170 0.830 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.469 10.667 23.107 30.868 hybrid contribution 1.210 0.055 1.727 2.109 sum -16.259 10.722 24.833 31.560 Atomic orbital electron populations 1.22377 0.94570 1.02953 1.03632 1.21692 0.94290 0.98222 0.88097 0.88012 1.21453 0.79331 1.00496 0.98227 1.45541 1.07862 1.58900 1.22643 1.20026 0.88761 0.77302 0.82389 1.90680 1.70459 1.48980 1.35128 1.23351 0.95224 1.05530 1.03779 1.85548 1.05716 1.75482 1.25842 1.23230 0.91677 1.44319 1.09943 0.90039 1.26130 1.05214 0.93846 0.94053 1.70194 1.37275 1.36756 1.10605 0.84907 0.75929 0.78271 0.78844 1.18058 1.19990 1.19859 1.60487 1.58534 1.09893 1.03190 1.20997 1.01602 0.94150 0.85958 1.19536 0.91425 0.95786 0.95509 1.21337 1.02471 0.99203 0.93918 1.17376 0.86228 0.96176 0.90583 1.91522 1.68524 1.80789 1.70912 1.21174 0.92164 1.05225 1.03296 1.17508 0.77320 0.99740 0.96233 1.91528 1.31746 1.94819 1.93976 1.21344 0.97198 1.01002 0.96615 0.91394 0.92190 0.90442 0.91972 0.93094 0.74569 0.87409 0.87732 0.92027 0.83122 0.88215 0.91273 0.82107 0.83008 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 9.16 71.98 0.66 -0.59 16 2 C 0.09 0.86 2.75 44.91 0.12 0.98 16 3 H 0.10 0.78 7.80 -2.39 -0.02 0.76 16 4 C 0.13 2.54 5.37 86.38 0.46 3.00 16 5 N -0.70 -17.00 5.39 -463.07 -2.50 -19.49 16 6 C 0.53 19.65 7.85 87.66 0.69 20.34 16 7 O -0.57 -26.81 15.86 -3.04 -0.05 -26.86 16 8 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 9 S -0.15 -8.62 20.57 -56.49 -1.16 -9.79 16 10 C -0.54 -31.45 9.50 67.95 0.65 -30.80 16 11 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 12 C 0.01 0.70 5.49 84.86 0.47 1.16 16 13 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 14 Si 1.00 44.12 29.55 68.60 2.03 46.15 16 15 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 N -0.69 -6.34 5.68 -495.57 -2.81 -9.15 16 19 C 0.10 0.58 5.61 85.55 0.48 1.06 16 20 C -0.02 -0.21 5.39 -19.88 -0.11 -0.32 16 21 C -0.15 -1.49 9.68 22.32 0.22 -1.27 16 22 C 0.12 1.61 7.30 22.37 0.16 1.78 16 23 F -0.14 -2.19 17.27 44.97 0.78 -1.42 16 24 C -0.20 -2.98 10.01 22.35 0.22 -2.76 16 25 C 0.11 1.81 7.30 22.37 0.16 1.97 16 26 F -0.14 -2.80 17.27 44.97 0.78 -2.02 16 27 C -0.14 -1.83 9.68 22.32 0.22 -1.62 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.49 8.13 -2.39 -0.02 0.47 16 30 H 0.08 0.31 7.45 -2.39 -0.02 0.29 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.42 7.87 8.14 -92.71 -0.75 7.12 16 34 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.10 3.88 8.14 -2.40 -0.02 3.86 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.35 3.25 8.46 -89.69 -0.76 2.49 16 38 H 0.10 0.45 8.00 -2.39 -0.02 0.43 16 39 H 0.07 0.17 7.38 -2.39 -0.02 0.15 16 40 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 41 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -78.27 383.73 1.74 -76.53 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -0.45 Total: 14.08 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 4.84 Total: -11.76 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -5.02 Total: -84.92 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 1.55 Total: -3.44 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.79 kcal Total: -78.27 1.74 -76.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265754290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.999 kcal (2) G-P(sol) polarization free energy of solvation -78.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds