Wall clock time and date at job start Wed Apr 1 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 119.99869 * 2 1 4 4 C 1.53004 * 109.46871 * 89.99923 * 3 2 1 5 5 N 1.46901 * 109.46916 * 179.97438 * 4 3 2 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47066 * 180.02562 * 6 5 4 8 8 C 1.38257 * 119.96846 * 269.72513 * 7 6 5 9 9 C 1.38214 * 120.07432 * 179.76903 * 8 7 6 10 10 C 1.38408 * 119.99608 * 0.50369 * 9 8 7 11 11 F 1.35103 * 120.03606 * 179.72212 * 10 9 8 12 12 C 1.38648 * 119.93232 * 359.75216 * 10 9 8 13 13 F 1.35097 * 120.03844 * 180.02562 * 12 10 9 14 14 C 1.38209 * 119.96433 * 90.00138 * 7 6 5 15 15 C 1.34777 * 120.00172 * 179.97438 * 2 1 3 16 16 O 1.21280 * 119.99940 * 179.97438 * 15 2 1 17 17 C 1.50699 * 120.00011 * 0.02562 * 15 2 1 18 18 S 1.80993 * 109.47098 * 179.97438 * 17 15 2 19 19 C 1.76199 * 100.00034 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00178 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00355 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99638 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00188 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47048 * 60.00345 * 23 21 19 25 25 H 1.48508 * 109.46852 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46930 * 300.00268 * 23 21 19 27 27 H 1.08999 * 109.47321 * 89.99777 * 1 2 3 28 28 H 1.09003 * 109.47143 * 209.99817 * 1 2 3 29 29 H 1.08997 * 109.47435 * 329.99462 * 1 2 3 30 30 H 1.08995 * 109.47316 * 330.00579 * 3 2 1 31 31 H 1.08996 * 109.47008 * 209.99475 * 3 2 1 32 32 H 1.09004 * 109.46889 * 60.00248 * 4 3 2 33 33 H 1.08995 * 109.47384 * 299.99888 * 4 3 2 34 34 H 1.00901 * 111.00067 * 303.95263 * 5 4 3 35 35 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 36 36 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 37 37 H 1.08006 * 119.96076 * 0.02562 * 8 7 6 38 38 H 1.08002 * 120.00061 * 180.25544 * 9 8 7 39 39 H 1.08005 * 120.00178 * 359.95617 * 14 7 6 40 40 H 1.09011 * 109.46526 * 299.99520 * 17 15 2 41 41 H 1.08993 * 109.47153 * 59.99459 * 17 15 2 42 42 H 0.97001 * 119.99961 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 1.4426 5 7 3.1874 2.9823 1.4426 6 6 3.4511 3.4379 2.8141 7 6 4.2043 4.7425 2.7739 8 6 5.5868 4.7417 2.7607 9 6 6.2798 5.9369 2.7190 10 6 5.5897 7.1366 2.7010 11 9 6.2664 8.3054 2.6660 12 6 4.2034 7.1376 2.7196 13 9 3.5277 8.3073 2.7016 14 6 3.5124 5.9388 2.7560 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1671 0.0001 17 6 1.3854 -2.4723 0.0005 18 16 2.5616 -3.8479 0.0005 19 6 1.4416 -5.2081 0.0013 20 1 0.3764 -5.0305 0.0020 21 6 1.9283 -6.5080 0.0010 22 7 3.2267 -6.7246 0.0006 23 14 0.7409 -7.9500 0.0011 24 1 -0.1144 -7.8870 -1.2112 25 1 1.5071 -9.2222 0.0013 26 1 -0.1139 -7.8873 1.2138 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6083 2.0284 -0.5137 31 1 3.1499 1.1384 -0.5137 32 1 3.0415 0.9507 1.9563 33 1 1.5000 1.8407 1.9564 34 1 4.0449 2.9044 0.9166 35 1 2.5058 3.5804 3.3376 36 1 4.0469 2.6899 3.3371 37 1 6.1259 3.8060 2.7788 38 1 7.3597 5.9348 2.7046 39 1 2.4324 5.9383 2.7702 40 1 0.7585 -2.5298 0.8904 41 1 0.7591 -2.5302 -0.8896 42 1 3.5669 -7.6330 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266644345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:41 Heat of formation + Delta-G solvation = -97.158030 kcal Electronic energy + Delta-G solvation = -25690.847766 eV Core-core repulsion = 21433.215534 eV Total energy + Delta-G solvation = -4257.632232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.84776 -48.92439 -39.77685 -39.48136 -36.69665 -35.14938 -32.45645 -32.18775 -31.26107 -30.03534 -28.13880 -26.53135 -25.55170 -24.91510 -23.71906 -22.44866 -21.95858 -19.25218 -18.36842 -17.72854 -17.61681 -17.38652 -16.75570 -16.68431 -16.31525 -15.95152 -15.42981 -15.33571 -14.93613 -14.86628 -14.82885 -14.55006 -14.47682 -13.87920 -13.86162 -13.58785 -13.18446 -12.98243 -12.75741 -12.58917 -12.44332 -12.30353 -12.20578 -12.17454 -11.75436 -11.59223 -11.20780 -11.07219 -11.06177 -10.78829 -9.84561 -9.55028 -9.44334 -9.17323 -9.08619 -8.82998 -8.58840 -8.26887 -6.53657 -6.24350 -3.95348 0.40961 0.53556 2.76097 2.92711 2.99317 3.21259 3.23166 3.26870 3.33643 3.54057 3.87374 3.99988 4.06291 4.17758 4.26719 4.52771 4.62264 4.74590 4.81495 5.00878 5.07018 5.10168 5.11254 5.15027 5.28938 5.36732 5.38712 5.40057 5.45188 5.52565 5.54603 5.66868 5.74694 5.81932 5.88322 5.91196 6.09687 6.26891 6.44479 6.65539 6.96808 7.46910 7.56569 8.32132 8.49509 9.20848 10.83005 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.028592 B = 0.001558 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.056526 B =17963.895976 C =18577.222178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.624 5.624 3 C 0.121 3.879 4 C 0.043 3.957 5 N -0.683 5.683 6 C 0.097 3.903 7 C -0.062 4.062 8 C -0.093 4.093 9 C -0.124 4.124 10 C 0.065 3.935 11 F -0.130 7.130 12 C 0.066 3.934 13 F -0.129 7.129 14 C -0.103 4.103 15 C 0.533 3.467 16 O -0.516 6.516 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.346 0.654 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 26.285 5.831 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.361 5.361 3 C -0.003 4.003 4 C -0.088 4.088 5 N -0.315 5.315 6 C -0.032 4.032 7 C -0.063 4.063 8 C -0.112 4.112 9 C -0.143 4.143 10 C 0.045 3.955 11 F -0.109 7.109 12 C 0.046 3.954 13 F -0.108 7.108 14 C -0.123 4.123 15 C 0.321 3.679 16 O -0.390 6.390 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.261 26.600 5.751 27.216 hybrid contribution -1.562 -1.015 0.273 1.882 sum -1.301 25.585 6.025 26.317 Atomic orbital electron populations 1.21781 0.79482 1.03125 1.01906 1.47824 1.06941 1.05543 1.75757 1.21241 0.98459 0.84839 0.95785 1.22363 0.98779 0.89356 0.98257 1.60481 1.27415 1.30701 1.12857 1.20887 0.99535 0.91851 0.90882 1.19713 0.93320 0.94707 0.98521 1.21086 0.93517 0.98143 0.98420 1.21089 1.01392 0.90203 1.01611 1.17746 0.88430 0.82702 1.06653 1.91536 1.79729 1.45643 1.93959 1.17695 0.88363 0.82668 1.06708 1.91537 1.79784 1.45456 1.94008 1.20980 1.01403 0.89562 1.00333 1.20385 0.87946 0.84636 0.74975 1.90686 1.13755 1.86831 1.47762 1.23560 1.04574 0.97224 1.04755 1.85377 1.08086 0.93366 1.96721 1.22817 0.94272 0.92205 1.59140 0.90977 1.24991 0.95680 0.98371 0.94497 1.70007 1.11753 1.21786 1.46727 0.86226 0.80186 0.80291 0.78811 1.19913 1.20795 1.19942 0.92602 0.90654 0.91312 0.89966 0.89919 0.94026 0.90785 0.83604 0.89527 0.93205 0.84134 0.83535 0.83462 0.89246 0.89213 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.24 59.84 0.61 1.38 16 2 N -0.62 -8.18 2.87 -181.58 -0.52 -8.70 16 3 C 0.12 1.32 5.67 -4.04 -0.02 1.29 16 4 C 0.04 0.41 6.01 -3.82 -0.02 0.39 16 5 N -0.68 -5.44 6.49 -115.05 -0.75 -6.19 16 6 C 0.10 0.65 5.81 -4.97 -0.03 0.62 16 7 C -0.06 -0.41 5.39 -104.63 -0.56 -0.97 16 8 C -0.09 -0.56 9.70 -39.58 -0.38 -0.94 16 9 C -0.12 -0.81 10.02 -39.53 -0.40 -1.20 16 10 C 0.07 0.55 7.31 -39.37 -0.29 0.27 16 11 F -0.13 -1.27 17.18 2.25 0.04 -1.23 16 12 C 0.07 0.57 7.31 -39.36 -0.29 0.28 16 13 F -0.13 -1.29 17.18 2.25 0.04 -1.25 16 14 C -0.10 -0.74 9.68 -39.53 -0.38 -1.13 16 15 C 0.53 9.67 7.69 -10.99 -0.08 9.59 16 16 O -0.52 -11.26 15.44 5.56 0.09 -11.17 16 17 C -0.15 -2.97 4.71 36.01 0.17 -2.80 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.04 9.50 30.94 0.29 -14.74 16 20 H 0.07 1.90 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 23 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.74 6.44 -51.93 -0.33 0.40 16 29 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 30 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 31 H 0.08 1.04 7.42 -51.93 -0.39 0.66 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.35 2.71 8.72 -39.29 -0.34 2.37 16 35 H 0.09 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.05 0.33 8.08 -51.93 -0.42 -0.09 16 37 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 38 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.09 1.62 7.40 -51.91 -0.38 1.24 16 41 H 0.09 1.65 8.11 -51.92 -0.42 1.23 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -33.94 383.48 -8.94 -42.88 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.63 Total: -1.22 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.48 Total: -5.98 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: -0.53 Total: -39.99 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.08 Total: -2.49 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.94 -8.94 -42.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266644345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.280 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds