Wall clock time and date at job start Wed Apr 1 2020 02:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 119.99869 * 2 1 4 4 C 1.53004 * 109.46871 * 89.99923 * 3 2 1 5 5 N 1.46901 * 109.46916 * 179.97438 * 4 3 2 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47066 * 180.02562 * 6 5 4 8 8 C 1.38257 * 119.96846 * 269.72513 * 7 6 5 9 9 C 1.38214 * 120.07432 * 179.76903 * 8 7 6 10 10 C 1.38408 * 119.99608 * 0.50369 * 9 8 7 11 11 F 1.35103 * 120.03606 * 179.72212 * 10 9 8 12 12 C 1.38648 * 119.93232 * 359.75216 * 10 9 8 13 13 F 1.35097 * 120.03844 * 180.02562 * 12 10 9 14 14 C 1.38209 * 119.96433 * 90.00138 * 7 6 5 15 15 C 1.34777 * 120.00172 * 179.97438 * 2 1 3 16 16 O 1.21280 * 119.99940 * 179.97438 * 15 2 1 17 17 C 1.50699 * 120.00011 * 0.02562 * 15 2 1 18 18 S 1.80993 * 109.47098 * 179.97438 * 17 15 2 19 19 C 1.76199 * 100.00034 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00178 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00355 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99638 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00188 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47048 * 60.00345 * 23 21 19 25 25 H 1.48508 * 109.46852 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46930 * 300.00268 * 23 21 19 27 27 H 1.08999 * 109.47321 * 89.99777 * 1 2 3 28 28 H 1.09003 * 109.47143 * 209.99817 * 1 2 3 29 29 H 1.08997 * 109.47435 * 329.99462 * 1 2 3 30 30 H 1.08995 * 109.47316 * 330.00579 * 3 2 1 31 31 H 1.08996 * 109.47008 * 209.99475 * 3 2 1 32 32 H 1.09004 * 109.46889 * 60.00248 * 4 3 2 33 33 H 1.08995 * 109.47384 * 299.99888 * 4 3 2 34 34 H 1.00901 * 111.00067 * 303.95263 * 5 4 3 35 35 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 36 36 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 37 37 H 1.08006 * 119.96076 * 0.02562 * 8 7 6 38 38 H 1.08002 * 120.00061 * 180.25544 * 9 8 7 39 39 H 1.08005 * 120.00178 * 359.95617 * 14 7 6 40 40 H 1.09011 * 109.46526 * 299.99520 * 17 15 2 41 41 H 1.08993 * 109.47153 * 59.99459 * 17 15 2 42 42 H 0.97001 * 119.99961 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 1.4426 5 7 3.1874 2.9823 1.4426 6 6 3.4511 3.4379 2.8141 7 6 4.2043 4.7425 2.7739 8 6 5.5868 4.7417 2.7607 9 6 6.2798 5.9369 2.7190 10 6 5.5897 7.1366 2.7010 11 9 6.2664 8.3054 2.6660 12 6 4.2034 7.1376 2.7196 13 9 3.5277 8.3073 2.7016 14 6 3.5124 5.9388 2.7560 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1671 0.0001 17 6 1.3854 -2.4723 0.0005 18 16 2.5616 -3.8479 0.0005 19 6 1.4416 -5.2081 0.0013 20 1 0.3764 -5.0305 0.0020 21 6 1.9283 -6.5080 0.0010 22 7 3.2267 -6.7246 0.0006 23 14 0.7409 -7.9500 0.0011 24 1 -0.1144 -7.8870 -1.2112 25 1 1.5071 -9.2222 0.0013 26 1 -0.1139 -7.8873 1.2138 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6083 2.0284 -0.5137 31 1 3.1499 1.1384 -0.5137 32 1 3.0415 0.9507 1.9563 33 1 1.5000 1.8407 1.9564 34 1 4.0449 2.9044 0.9166 35 1 2.5058 3.5804 3.3376 36 1 4.0469 2.6899 3.3371 37 1 6.1259 3.8060 2.7788 38 1 7.3597 5.9348 2.7046 39 1 2.4324 5.9383 2.7702 40 1 0.7585 -2.5298 0.8904 41 1 0.7591 -2.5302 -0.8896 42 1 3.5669 -7.6330 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266644345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:40 Heat of formation + Delta-G solvation = -118.919462 kcal Electronic energy + Delta-G solvation = -25691.791412 eV Core-core repulsion = 21433.215534 eV Total energy + Delta-G solvation = -4258.575879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.53038 -49.61655 -40.86581 -40.23447 -37.56291 -36.18569 -34.57677 -32.93607 -31.84798 -31.16811 -29.16368 -27.68049 -27.36274 -25.71126 -24.26770 -23.32665 -22.54525 -20.60941 -19.52458 -19.00484 -18.25108 -18.09508 -17.95638 -17.38909 -17.27847 -16.96638 -16.86654 -16.50525 -16.04925 -15.96040 -15.58073 -15.53513 -15.21372 -15.04440 -14.66172 -14.56792 -14.27349 -14.19287 -14.02854 -13.53574 -13.40382 -13.17003 -13.10237 -13.01447 -12.86547 -12.77487 -12.63374 -12.61923 -12.16615 -12.04482 -11.71686 -11.12100 -10.89640 -10.26263 -10.09273 -9.80536 -9.71275 -9.44183 -8.66402 -8.33861 -6.12064 -0.17986 0.00042 1.26905 1.44526 1.46899 1.56274 1.58492 2.08716 2.28202 2.32302 2.76197 3.00254 3.22769 3.27747 3.35972 3.52037 3.68434 3.77491 4.00780 4.04928 4.11486 4.19071 4.23996 4.35908 4.41726 4.50515 4.55864 4.61459 4.71859 4.76882 4.84654 4.86582 4.91512 4.97150 5.01941 5.03181 5.35029 5.42253 5.54386 5.70917 5.89473 6.20114 6.27076 6.31804 7.07378 7.15871 8.75009 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.028592 B = 0.001558 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.056526 B =17963.895976 C =18577.222178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.610 5.610 3 C 0.120 3.880 4 C 0.055 3.945 5 N -0.679 5.679 6 C 0.099 3.901 7 C -0.061 4.061 8 C -0.088 4.088 9 C -0.120 4.120 10 C 0.046 3.954 11 F -0.142 7.142 12 C 0.046 3.954 13 F -0.142 7.142 14 C -0.101 4.101 15 C 0.530 3.470 16 O -0.564 6.564 17 C -0.125 4.125 18 S -0.153 6.153 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.262 1.262 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.061 0.939 32 H 0.012 0.988 33 H 0.089 0.911 34 H 0.346 0.654 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 26.643 6.045 27.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C -0.003 4.003 4 C -0.076 4.076 5 N -0.311 5.311 6 C -0.029 4.029 7 C -0.061 4.061 8 C -0.107 4.107 9 C -0.138 4.138 10 C 0.026 3.974 11 F -0.121 7.121 12 C 0.026 3.974 13 F -0.121 7.121 14 C -0.120 4.120 15 C 0.317 3.683 16 O -0.442 6.442 17 C -0.276 4.276 18 S 0.074 5.926 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.187 1.187 25 H -0.205 1.205 26 H -0.186 1.186 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.107 0.893 34 H 0.164 0.836 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.177 0.823 38 H 0.184 0.816 39 H 0.177 0.823 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.160 27.013 5.968 27.749 hybrid contribution -0.853 -0.985 0.205 1.319 sum -3.014 26.028 6.173 26.920 Atomic orbital electron populations 1.22108 0.76762 1.04814 1.03407 1.47811 1.08583 1.04612 1.73370 1.21409 0.97905 0.84156 0.96855 1.22184 0.99190 0.89226 0.96959 1.60504 1.27494 1.29375 1.13685 1.20910 1.00166 0.91677 0.90172 1.19753 0.93602 0.94432 0.98359 1.21338 0.93472 0.98690 0.97192 1.21316 1.02401 0.89503 1.00628 1.18042 0.88615 0.82970 1.07742 1.91499 1.79954 1.46459 1.94200 1.17933 0.88612 0.82779 1.08031 1.91498 1.80043 1.46250 1.94280 1.21106 1.02045 0.89092 0.99731 1.20149 0.87297 0.85549 0.75275 1.90670 1.15609 1.87503 1.50463 1.23386 1.02738 0.95103 1.06353 1.85551 1.12680 0.97310 1.97035 1.23168 0.94656 0.92672 1.58957 0.89893 1.26120 0.97570 1.01670 0.93732 1.70177 1.14106 1.22506 1.47948 0.85018 0.77638 0.75915 0.79521 1.18657 1.20476 1.18610 0.91147 0.90761 0.87948 0.87012 0.92031 0.96933 0.89258 0.83589 0.88494 0.93037 0.82337 0.81641 0.82251 0.87366 0.87600 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 10.24 127.77 1.31 2.40 16 2 N -0.61 -14.66 2.87 -846.77 -2.43 -17.10 16 3 C 0.12 2.37 5.67 86.38 0.49 2.86 16 4 C 0.05 0.95 6.01 86.30 0.52 1.47 16 5 N -0.68 -9.40 6.49 -517.92 -3.36 -12.76 16 6 C 0.10 1.11 5.81 85.55 0.50 1.61 16 7 C -0.06 -0.70 5.39 -19.87 -0.11 -0.80 16 8 C -0.09 -0.91 9.70 22.27 0.22 -0.69 16 9 C -0.12 -1.41 10.02 22.30 0.22 -1.18 16 10 C 0.05 0.78 7.31 22.41 0.16 0.94 16 11 F -0.14 -2.82 17.18 44.97 0.77 -2.05 16 12 C 0.05 0.79 7.31 22.41 0.16 0.96 16 13 F -0.14 -2.87 17.18 44.97 0.77 -2.09 16 14 C -0.10 -1.31 9.68 22.31 0.22 -1.09 16 15 C 0.53 18.99 7.69 87.66 0.67 19.67 16 16 O -0.56 -25.24 15.44 -3.03 -0.05 -25.29 16 17 C -0.12 -4.83 4.71 71.24 0.34 -4.49 16 18 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 19 C -0.55 -30.76 9.50 67.96 0.65 -30.11 16 20 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 21 C 0.01 0.78 5.49 84.86 0.47 1.25 16 22 N -0.91 -55.39 13.22 21.65 0.29 -55.10 16 23 Si 1.00 42.85 29.55 68.60 2.03 44.87 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.20 6.44 -2.39 -0.02 1.18 16 29 H 0.10 0.95 8.07 -2.39 -0.02 0.93 16 30 H 0.11 1.61 8.07 -2.39 -0.02 1.59 16 31 H 0.06 1.52 7.42 -2.39 -0.02 1.50 16 32 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.35 4.90 8.72 -89.69 -0.78 4.12 16 35 H 0.10 0.92 8.08 -2.39 -0.02 0.90 16 36 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 37 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 38 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.11 3.76 7.40 -2.39 -0.02 3.74 16 41 H 0.11 3.73 8.11 -2.40 -0.02 3.71 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -76.76 383.48 2.94 -73.83 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.27 Total: 12.46 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.81 Total: -7.24 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -5.51 Total: -84.96 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 1.55 Total: -4.14 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -76.76 2.94 -73.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266644345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.094 kcal (2) G-P(sol) polarization free energy of solvation -76.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds