Wall clock time and date at job start Wed Apr 1 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 120.00133 * 2 1 4 4 H 1.48504 * 109.46852 * 239.99291 * 3 2 1 5 5 H 1.48494 * 109.47292 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47121 * 120.00017 * 3 2 1 7 7 C 1.38803 * 119.99463 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99518 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00178 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99913 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47167 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00169 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99987 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99750 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46889 * 179.97438 * 14 13 11 16 16 N 1.46897 * 109.46991 * 179.97438 * 15 14 13 17 17 C 1.46895 * 111.00092 * 190.00488 * 16 15 14 18 18 C 1.50703 * 109.47271 * 162.31474 * 17 16 15 19 19 O 1.21234 * 119.99933 * 1.32967 * 18 17 16 20 20 N 1.34780 * 119.99669 * 181.32943 * 18 17 16 21 21 C 1.34777 * 119.99497 * 179.97438 * 20 18 17 22 22 N 1.34780 * 119.99497 * 180.02562 * 21 20 18 23 23 O 1.21537 * 120.00516 * 0.02562 * 21 20 18 24 24 C 1.46901 * 111.00057 * 66.04616 * 16 15 14 25 25 C 1.53001 * 117.49535 * 127.73731 * 24 16 15 26 26 C 1.53001 * 117.49442 * 59.07872 * 24 16 15 27 27 H 0.97007 * 119.99727 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47374 * 60.00100 * 10 9 7 29 29 H 1.09003 * 109.46918 * 300.00128 * 10 9 7 30 30 H 0.96995 * 120.00382 * 359.97438 * 13 11 10 31 31 H 1.09003 * 109.46967 * 60.00231 * 14 13 11 32 32 H 1.08993 * 109.47416 * 299.99920 * 14 13 11 33 33 H 1.08993 * 109.47266 * 300.00305 * 15 14 13 34 34 H 1.09001 * 109.46432 * 60.00207 * 15 14 13 35 35 H 1.09007 * 109.46915 * 282.31213 * 17 16 15 36 36 H 1.08999 * 109.47310 * 42.30911 * 17 16 15 37 37 H 0.96998 * 120.00252 * 0.02562 * 20 18 17 38 38 H 0.96998 * 120.00252 * 0.02562 * 22 21 20 39 39 H 0.97002 * 119.99777 * 180.02562 * 22 21 20 40 40 H 1.08991 * 115.55505 * 273.40911 * 24 16 15 41 41 H 1.08997 * 117.50274 * 0.02562 * 25 24 16 42 42 H 1.09002 * 117.49465 * 145.02459 * 25 24 16 43 43 H 1.08998 * 117.49999 * 214.97769 * 26 24 16 44 44 H 1.09002 * 117.50043 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1042 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0021 11 6 1.9871 -5.3028 0.0030 12 8 0.7907 -5.5024 0.0021 13 7 2.8438 -6.3432 0.0037 14 6 2.3299 -7.7152 0.0040 15 6 3.5020 -8.6987 0.0042 16 7 2.9867 -10.0744 0.0050 17 6 4.0669 -11.0409 0.2435 18 6 3.4755 -12.3609 0.6666 19 8 2.2723 -12.4913 0.7370 20 7 4.2844 -13.3964 0.9668 21 6 3.7555 -14.5767 1.3457 22 7 4.5644 -15.6120 1.6464 23 8 2.5492 -14.7076 1.4163 24 6 2.2803 -10.3728 -1.2479 25 6 2.7003 -11.6290 -2.0137 26 6 3.0702 -10.2445 -2.5520 27 1 -0.4850 0.8401 -0.0004 28 1 3.1235 -3.7311 0.8925 29 1 3.1249 -3.7318 -0.8875 30 1 3.8005 -6.1837 0.0033 31 1 1.7217 -7.8755 -0.8863 32 1 1.7210 -7.8749 0.8937 33 1 4.1106 -8.5389 -0.8858 34 1 4.1105 -8.5384 0.8942 35 1 4.6413 -11.1772 -0.6729 36 1 4.7218 -10.6671 1.0306 37 1 5.2471 -13.2919 0.9109 38 1 5.5271 -15.5075 1.5905 39 1 4.1837 -16.4617 1.9188 40 1 1.2255 -10.0994 -1.2695 41 1 3.5004 -12.2342 -1.5877 42 1 1.9217 -12.1817 -2.5395 43 1 2.5348 -9.8871 -3.4316 44 1 4.1138 -9.9383 -2.4802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267321915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:18 Heat of formation + Delta-G solvation = -50.096826 kcal Electronic energy + Delta-G solvation = -26812.740362 eV Core-core repulsion = 22700.529123 eV Total energy + Delta-G solvation = -4112.211239 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66418 -39.97771 -39.02452 -37.96442 -35.19530 -35.08024 -33.82728 -33.57029 -32.41270 -30.63575 -28.90753 -26.61094 -25.44511 -23.79433 -23.23422 -22.43735 -20.97104 -20.46099 -20.10985 -19.07366 -18.08812 -17.82973 -17.69268 -16.68317 -16.30981 -16.18432 -16.12779 -15.50680 -15.30589 -14.98714 -14.79112 -14.57714 -14.43401 -14.28073 -13.92165 -13.69822 -13.12076 -13.02810 -12.61467 -12.47447 -12.39178 -11.87344 -11.75760 -11.39865 -11.36656 -11.03222 -11.02974 -10.99423 -10.76137 -10.63759 -10.47407 -10.31067 -10.04745 -9.80983 -9.38881 -9.04864 -8.85131 -8.77275 -8.21522 -6.48008 -6.19789 -3.90415 1.71084 1.90883 2.82730 2.90424 3.13989 3.21827 3.24279 3.29442 3.39979 3.46184 3.66279 3.85974 4.08497 4.21984 4.27142 4.46729 4.48326 4.57299 4.66527 4.75814 4.84941 5.12267 5.15107 5.21065 5.24127 5.47126 5.51418 5.64209 5.69801 5.77019 5.78701 5.86877 5.91997 5.98084 6.14991 6.21178 6.38714 6.48110 6.67254 6.92640 7.60501 7.64687 7.72116 7.92742 8.36386 8.64985 9.25132 10.87545 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.031886 B = 0.001588 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.922774 B =17622.585789 C =17748.747875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.515 6.515 13 N -0.739 5.739 14 C 0.127 3.873 15 C 0.049 3.951 16 N -0.487 5.487 17 C 0.033 3.967 18 C 0.512 3.488 19 O -0.430 6.430 20 N -0.695 5.695 21 C 0.696 3.304 22 N -0.860 5.860 23 O -0.532 6.532 24 C 0.034 3.966 25 C -0.181 4.181 26 C -0.214 4.214 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.396 0.604 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.408 0.592 38 H 0.399 0.601 39 H 0.419 0.581 40 H 0.134 0.866 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.633 -30.390 -0.849 36.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.388 6.388 13 N -0.395 5.395 14 C 0.002 3.998 15 C -0.078 4.078 16 N -0.209 5.209 17 C -0.099 4.099 18 C 0.295 3.705 19 O -0.294 6.294 20 N -0.364 5.364 21 C 0.394 3.606 22 N -0.430 5.430 23 O -0.403 6.403 24 C -0.074 4.074 25 C -0.218 4.218 26 C -0.253 4.253 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.229 0.771 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.242 0.758 38 H 0.227 0.773 39 H 0.252 0.748 40 H 0.151 0.849 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.223 -30.647 -0.395 34.222 hybrid contribution 4.134 1.000 -0.585 4.293 sum 19.357 -29.648 -0.979 35.421 Atomic orbital electron populations 1.70012 1.05950 1.27554 1.46714 1.24989 0.95019 0.98999 0.94547 0.86227 0.79233 0.81287 0.78753 1.19975 1.20813 1.19957 1.22832 0.94868 0.91722 1.59108 0.90993 1.85436 1.04890 0.96248 1.96712 1.23524 1.06562 0.95390 1.04864 1.20277 0.86514 0.86176 0.75238 1.90720 1.15356 1.85538 1.47208 1.45890 1.09842 1.05467 1.78261 1.21094 0.95431 0.79825 1.03437 1.22317 0.96923 0.86801 1.01787 1.61489 1.25037 1.01178 1.33220 1.22049 0.94200 0.90995 1.02628 1.20692 0.87498 0.84653 0.77622 1.90885 1.13744 1.81392 1.43382 1.44190 1.12293 1.12167 1.67770 1.16152 0.85810 0.80390 0.78255 1.43106 1.09914 1.14611 1.75394 1.91148 1.12098 1.81964 1.55046 1.22848 0.98971 1.01410 0.84200 1.23281 1.03666 0.91101 1.03772 1.23494 1.01513 1.00476 0.99792 0.92126 0.89234 0.89271 0.77056 0.91331 0.90552 0.93347 0.89719 0.90568 0.87050 0.75769 0.77314 0.74751 0.84871 0.89409 0.88003 0.87900 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 11 C 0.53 9.92 7.85 -10.99 -0.09 9.83 16 12 O -0.51 -11.93 15.86 5.55 0.09 -11.84 16 13 N -0.74 -9.49 5.56 -60.29 -0.33 -9.82 16 14 C 0.13 1.49 5.67 -4.04 -0.02 1.46 16 15 C 0.05 0.37 4.96 -3.82 -0.02 0.35 16 16 N -0.49 -4.19 4.34 -228.09 -0.99 -5.18 16 17 C 0.03 0.18 5.00 -4.98 -0.02 0.16 16 18 C 0.51 4.33 5.82 -10.98 -0.06 4.27 16 19 O -0.43 -6.16 13.61 -18.21 -0.25 -6.41 16 20 N -0.70 -3.44 5.24 -15.78 -0.08 -3.52 16 21 C 0.70 5.40 8.78 -86.91 -0.76 4.64 16 22 N -0.86 -2.08 8.88 27.63 0.25 -1.84 16 23 O -0.53 -7.57 15.58 -18.47 -0.29 -7.86 16 24 C 0.03 0.32 4.55 -67.71 -0.31 0.01 16 25 C -0.18 -1.47 8.48 -26.69 -0.23 -1.70 16 26 C -0.21 -1.56 9.27 -26.69 -0.25 -1.81 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 29 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 30 H 0.40 3.68 8.47 -40.82 -0.35 3.33 16 31 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.31 6.87 -51.93 -0.36 -0.05 16 34 H 0.08 0.51 7.84 -51.93 -0.41 0.10 16 35 H 0.08 0.25 5.99 -51.92 -0.31 -0.06 16 36 H 0.11 0.31 7.77 -51.93 -0.40 -0.10 16 37 H 0.41 -0.10 8.71 -40.82 -0.36 -0.45 16 38 H 0.40 -0.58 8.84 -40.82 -0.36 -0.94 16 39 H 0.42 0.83 8.93 -40.82 -0.36 0.46 16 40 H 0.13 1.44 8.03 -51.93 -0.42 1.03 16 41 H 0.09 0.63 4.91 -51.93 -0.26 0.38 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.56 7.15 -51.93 -0.37 0.19 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -43.31 382.93 -9.67 -52.98 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.99 Total: -0.66 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.34 Total: 1.39 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.43 Total: -45.89 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.45 Total: -26.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -43.31 -9.67 -52.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267321915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.885 kcal (2) G-P(sol) polarization free energy of solvation -43.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds