Wall clock time and date at job start Wed Apr 1 2020 03:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 120.00133 * 2 1 4 4 H 1.48504 * 109.46852 * 239.99291 * 3 2 1 5 5 H 1.48494 * 109.47292 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47121 * 120.00017 * 3 2 1 7 7 C 1.38803 * 119.99463 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99518 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00178 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99913 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47167 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00169 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99987 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99750 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46889 * 179.97438 * 14 13 11 16 16 N 1.46897 * 109.46991 * 179.97438 * 15 14 13 17 17 C 1.46895 * 111.00092 * 190.00488 * 16 15 14 18 18 C 1.50703 * 109.47271 * 162.31474 * 17 16 15 19 19 O 1.21234 * 119.99933 * 1.32967 * 18 17 16 20 20 N 1.34780 * 119.99669 * 181.32943 * 18 17 16 21 21 C 1.34777 * 119.99497 * 179.97438 * 20 18 17 22 22 N 1.34780 * 119.99497 * 180.02562 * 21 20 18 23 23 O 1.21537 * 120.00516 * 0.02562 * 21 20 18 24 24 C 1.46901 * 111.00057 * 66.04616 * 16 15 14 25 25 C 1.53001 * 117.49535 * 127.73731 * 24 16 15 26 26 C 1.53001 * 117.49442 * 59.07872 * 24 16 15 27 27 H 0.97007 * 119.99727 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47374 * 60.00100 * 10 9 7 29 29 H 1.09003 * 109.46918 * 300.00128 * 10 9 7 30 30 H 0.96995 * 120.00382 * 359.97438 * 13 11 10 31 31 H 1.09003 * 109.46967 * 60.00231 * 14 13 11 32 32 H 1.08993 * 109.47416 * 299.99920 * 14 13 11 33 33 H 1.08993 * 109.47266 * 300.00305 * 15 14 13 34 34 H 1.09001 * 109.46432 * 60.00207 * 15 14 13 35 35 H 1.09007 * 109.46915 * 282.31213 * 17 16 15 36 36 H 1.08999 * 109.47310 * 42.30911 * 17 16 15 37 37 H 0.96998 * 120.00252 * 0.02562 * 20 18 17 38 38 H 0.96998 * 120.00252 * 0.02562 * 22 21 20 39 39 H 0.97002 * 119.99777 * 180.02562 * 22 21 20 40 40 H 1.08991 * 115.55505 * 273.40911 * 24 16 15 41 41 H 1.08997 * 117.50274 * 0.02562 * 25 24 16 42 42 H 1.09002 * 117.49465 * 145.02459 * 25 24 16 43 43 H 1.08998 * 117.49999 * 214.97769 * 26 24 16 44 44 H 1.09002 * 117.50043 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1042 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0021 11 6 1.9871 -5.3028 0.0030 12 8 0.7907 -5.5024 0.0021 13 7 2.8438 -6.3432 0.0037 14 6 2.3299 -7.7152 0.0040 15 6 3.5020 -8.6987 0.0042 16 7 2.9867 -10.0744 0.0050 17 6 4.0669 -11.0409 0.2435 18 6 3.4755 -12.3609 0.6666 19 8 2.2723 -12.4913 0.7370 20 7 4.2844 -13.3964 0.9668 21 6 3.7555 -14.5767 1.3457 22 7 4.5644 -15.6120 1.6464 23 8 2.5492 -14.7076 1.4163 24 6 2.2803 -10.3728 -1.2479 25 6 2.7003 -11.6290 -2.0137 26 6 3.0702 -10.2445 -2.5520 27 1 -0.4850 0.8401 -0.0004 28 1 3.1235 -3.7311 0.8925 29 1 3.1249 -3.7318 -0.8875 30 1 3.8005 -6.1837 0.0033 31 1 1.7217 -7.8755 -0.8863 32 1 1.7210 -7.8749 0.8937 33 1 4.1106 -8.5389 -0.8858 34 1 4.1105 -8.5384 0.8942 35 1 4.6413 -11.1772 -0.6729 36 1 4.7218 -10.6671 1.0306 37 1 5.2471 -13.2919 0.9109 38 1 5.5271 -15.5075 1.5905 39 1 4.1837 -16.4617 1.9188 40 1 1.2255 -10.0994 -1.2695 41 1 3.5004 -12.2342 -1.5877 42 1 1.9217 -12.1817 -2.5395 43 1 2.5348 -9.8871 -3.4316 44 1 4.1138 -9.9383 -2.4802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267321915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:17 Heat of formation + Delta-G solvation = -89.049306 kcal Electronic energy + Delta-G solvation = -26814.429468 eV Core-core repulsion = 22700.529123 eV Total energy + Delta-G solvation = -4113.900345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25521 -40.77746 -40.27025 -38.68465 -36.25677 -35.76499 -34.56644 -34.43977 -34.25096 -31.77232 -29.99016 -27.74894 -27.29125 -24.43771 -23.89802 -23.07172 -21.80679 -21.57672 -20.84552 -19.78977 -19.55172 -18.56812 -18.32841 -17.74631 -17.33534 -16.99660 -16.85659 -16.83422 -16.65667 -16.23964 -15.83187 -15.65408 -15.31059 -15.09204 -15.05752 -14.66307 -14.58329 -14.25459 -13.79436 -13.50169 -13.21316 -13.14656 -12.89819 -12.83399 -12.60650 -12.35631 -12.16725 -12.11866 -11.73108 -11.65274 -11.27727 -11.14226 -11.10607 -10.97430 -10.75319 -10.71047 -10.24377 -10.09349 -9.31838 -8.64906 -8.32126 -6.10679 1.10034 1.27595 1.42695 1.45953 1.50862 1.59423 1.64934 2.19692 2.27759 2.30240 2.79367 2.91010 3.01971 3.28871 3.36226 3.64865 3.77670 3.86633 3.90418 3.98371 4.08725 4.13363 4.26601 4.33052 4.35541 4.52565 4.54405 4.65260 4.88526 4.93683 4.99872 5.07463 5.09435 5.11847 5.41437 5.43758 5.49605 5.85528 5.91412 5.93644 6.21775 6.55943 6.62178 7.08812 7.20005 7.30074 7.47453 8.76854 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.031886 B = 0.001588 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.922774 B =17622.585789 C =17748.747875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.086 0.914 9 S -0.159 6.159 10 C -0.126 4.126 11 C 0.532 3.468 12 O -0.570 6.570 13 N -0.707 5.707 14 C 0.127 3.873 15 C 0.062 3.938 16 N -0.511 5.511 17 C 0.037 3.963 18 C 0.510 3.490 19 O -0.499 6.499 20 N -0.674 5.674 21 C 0.690 3.310 22 N -0.831 5.831 23 O -0.603 6.603 24 C 0.014 3.986 25 C -0.182 4.182 26 C -0.191 4.191 27 H 0.270 0.730 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.420 0.580 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.151 0.849 37 H 0.435 0.565 38 H 0.421 0.579 39 H 0.424 0.576 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.220 -30.548 -0.951 39.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.104 0.896 9 S 0.068 5.932 10 C -0.277 4.277 11 C 0.318 3.682 12 O -0.449 6.449 13 N -0.362 5.362 14 C 0.003 3.997 15 C -0.065 4.065 16 N -0.234 5.234 17 C -0.093 4.093 18 C 0.296 3.704 19 O -0.367 6.367 20 N -0.344 5.344 21 C 0.388 3.612 22 N -0.402 5.402 23 O -0.480 6.480 24 C -0.095 4.095 25 C -0.219 4.219 26 C -0.230 4.230 27 H 0.079 0.921 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.257 0.743 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.169 0.831 37 H 0.275 0.725 38 H 0.254 0.746 39 H 0.258 0.742 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 21.009 -30.864 -0.496 37.339 hybrid contribution 2.467 0.851 -0.530 2.663 sum 23.476 -30.013 -1.026 38.117 Atomic orbital electron populations 1.70195 1.08076 1.28625 1.48014 1.26156 0.95943 1.03411 0.93742 0.84985 0.77757 0.75573 0.79551 1.18533 1.20609 1.18562 1.23189 0.95421 0.91883 1.58888 0.89633 1.85685 1.10941 0.99492 1.97074 1.23352 1.03369 0.93953 1.07071 1.20121 0.86187 0.86829 0.75106 1.90712 1.17821 1.86160 1.50173 1.45519 1.10397 1.04691 1.75553 1.21124 0.97296 0.79942 1.01343 1.22225 0.94868 0.85044 1.04344 1.61270 1.26944 1.02227 1.32971 1.22214 0.93330 0.88470 1.05304 1.21440 0.86899 0.86015 0.76050 1.90878 1.16819 1.82584 1.46461 1.43891 1.13559 1.10676 1.66308 1.16501 0.85260 0.81623 0.77840 1.42877 1.10766 1.13383 1.73213 1.91113 1.15495 1.83230 1.58155 1.22643 0.98163 1.02775 0.85874 1.23270 1.03682 0.91372 1.03614 1.23523 1.02328 0.99055 0.98125 0.92069 0.86885 0.86837 0.74261 0.93199 0.93221 0.90767 0.86894 0.87248 0.83144 0.72471 0.74619 0.74225 0.88359 0.88032 0.89630 0.88493 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.55 -31.04 9.50 67.96 0.65 -30.40 16 8 H 0.09 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.16 -8.89 20.57 -56.49 -1.16 -10.05 16 10 C -0.13 -4.87 6.16 71.24 0.44 -4.44 16 11 C 0.53 19.54 7.85 87.66 0.69 20.23 16 12 O -0.57 -27.42 15.86 -3.04 -0.05 -27.47 16 13 N -0.71 -16.57 5.56 -463.04 -2.57 -19.14 16 14 C 0.13 2.88 5.67 86.38 0.49 3.37 16 15 C 0.06 0.72 4.96 86.31 0.43 1.15 16 16 N -0.51 -7.85 4.34 -875.53 -3.80 -11.65 16 17 C 0.04 0.27 5.00 85.56 0.43 0.69 16 18 C 0.51 7.90 5.82 87.66 0.51 8.41 16 19 O -0.50 -14.86 13.61 19.87 0.27 -14.59 16 20 N -0.67 -5.13 5.24 -440.52 -2.31 -7.44 16 21 C 0.69 10.11 8.78 179.05 1.57 11.69 16 22 N -0.83 -2.34 8.88 -184.79 -1.64 -3.98 16 23 O -0.60 -17.98 15.58 18.93 0.29 -17.69 16 24 C 0.01 0.27 4.55 44.92 0.20 0.47 16 25 C -0.18 -2.86 8.48 30.62 0.26 -2.60 16 26 C -0.19 -2.41 9.27 30.62 0.28 -2.13 16 27 H 0.27 15.59 8.31 -92.70 -0.77 14.81 16 28 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 29 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 30 H 0.42 5.99 8.47 -92.71 -0.79 5.20 16 31 H 0.05 1.34 7.30 -2.39 -0.02 1.32 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 0.53 6.87 -2.39 -0.02 0.51 16 34 H 0.11 0.74 7.84 -2.39 -0.02 0.72 16 35 H 0.11 0.12 5.99 -2.38 -0.01 0.11 16 36 H 0.15 -0.07 7.77 -2.39 -0.02 -0.09 16 37 H 0.44 -2.00 8.71 -92.71 -0.81 -2.80 16 38 H 0.42 -2.64 8.84 -92.71 -0.82 -3.46 16 39 H 0.42 1.04 8.93 -92.71 -0.83 0.21 16 40 H 0.10 2.43 8.03 -2.39 -0.02 2.41 16 41 H 0.10 1.26 4.91 -2.39 -0.01 1.25 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.12 0.88 7.15 -2.39 -0.02 0.86 16 Total: -1.00 -104.61 382.93 -4.38 -108.99 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -2.14 Total: 6.28 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 6.41 Total: 7.60 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -10.04 Total: -98.42 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: 0.52 Total: -59.75 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.16 Total: -10.05 kcal Total: -104.61 -4.38 -108.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267321915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.943 kcal (2) G-P(sol) polarization free energy of solvation -104.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds