Wall clock time and date at job start Wed Apr 1 2020 03:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 108.57951 * 2 1 4 4 O 1.42095 * 108.57914 * 228.97263 * 2 1 3 5 5 C 1.81407 * 101.91994 * 114.48400 * 2 1 3 6 6 C 1.53001 * 109.47011 * 179.97438 * 5 2 1 7 7 N 1.46497 * 109.46771 * 180.02562 * 6 5 2 8 8 C 1.34781 * 119.99703 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99896 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99905 * 179.97438 * 8 7 6 11 11 H 1.09004 * 115.58740 * 34.17678 * 10 8 7 12 12 C 1.53203 * 117.52315 * 248.34884 * 10 8 7 13 13 C 1.52088 * 117.52158 * 179.97438 * 10 8 7 14 14 C 1.52623 * 129.80840 * 348.35297 * 13 10 8 15 15 N 1.47251 * 87.69268 * 195.57146 * 14 13 10 16 16 C 1.34776 * 135.89799 * 206.22810 * 15 14 13 17 17 O 1.21282 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00035 * 179.97438 * 16 15 14 19 19 C 1.50706 * 109.47294 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99515 * 0.02562 * 19 18 16 21 21 C 1.37870 * 120.00176 * 180.02562 * 19 18 16 22 22 N 1.31520 * 119.99883 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47293 * 89.99746 * 23 21 19 25 25 H 1.48504 * 109.47104 * 209.99992 * 23 21 19 26 26 H 1.48495 * 109.47249 * 329.99739 * 23 21 19 27 27 C 1.47250 * 88.20441 * 26.49059 * 15 14 13 28 28 H 1.08996 * 109.47155 * 305.51824 * 1 2 3 29 29 H 1.08998 * 109.46817 * 65.51321 * 1 2 3 30 30 H 1.09003 * 109.46992 * 185.51187 * 1 2 3 31 31 H 1.08997 * 109.46767 * 60.00290 * 5 2 1 32 32 H 1.08998 * 109.47170 * 300.00551 * 5 2 1 33 33 H 1.09000 * 109.46976 * 60.00037 * 6 5 2 34 34 H 1.08996 * 109.47196 * 300.00297 * 6 5 2 35 35 H 0.96996 * 120.00456 * 359.97438 * 7 6 5 36 36 H 1.09006 * 117.51991 * 145.16342 * 12 10 8 37 37 H 1.08996 * 117.57174 * 359.97438 * 12 10 8 38 38 H 1.08993 * 113.51370 * 80.86286 * 14 13 10 39 39 H 1.09000 * 113.51234 * 310.28017 * 14 13 10 40 40 H 1.09001 * 109.46665 * 60.00498 * 18 16 15 41 41 H 1.09000 * 109.47722 * 300.00830 * 18 16 15 42 42 H 0.97004 * 119.99507 * 180.02562 * 22 21 19 43 43 H 1.09001 * 113.51388 * 88.21127 * 27 15 14 44 44 H 1.08997 * 113.51587 * 218.80867 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8195 1.7980 7 7 4.0080 -1.4141 3.1023 8 6 5.2892 -1.5876 3.4829 9 8 6.1916 -1.2518 2.7454 10 6 5.6005 -2.1987 4.8248 11 1 4.9019 -2.9618 5.1680 12 6 6.2373 -1.2937 5.8843 13 6 7.0653 -2.3689 5.1968 14 6 8.3152 -2.2355 4.3310 15 7 9.0547 -2.9343 5.3955 16 6 10.3328 -2.9722 5.8215 17 8 11.1776 -2.3033 5.2649 18 6 10.7120 -3.8449 6.9900 19 6 12.1878 -3.7066 7.2624 20 1 12.7906 -3.0518 6.6507 21 6 12.7682 -4.4158 8.2924 22 7 12.0341 -5.2136 9.0369 23 14 14.5973 -4.2437 8.6304 24 1 14.8203 -3.1386 9.5969 25 1 15.1169 -5.5126 9.2007 26 1 15.3089 -3.9431 7.3622 27 6 7.7900 -3.5785 5.7875 28 1 -0.3633 0.5970 0.8364 29 1 -0.3633 0.4260 -0.9352 30 1 -0.3633 -1.0229 0.0987 31 1 1.7610 -1.7369 1.6665 32 1 1.7609 -0.1170 2.4043 33 1 4.1335 0.1816 1.7466 34 1 4.1328 -1.4383 1.0090 35 1 3.2863 -1.6823 3.6922 36 1 5.9574 -1.4618 6.9244 37 1 6.4316 -0.2566 5.6112 38 1 8.6347 -1.2038 4.1847 39 1 8.2603 -2.7974 3.3986 40 1 10.4811 -4.8844 6.7571 41 1 10.1497 -3.5366 7.8715 42 1 12.4425 -5.7123 9.7618 43 1 7.5915 -4.5078 5.2534 44 1 7.6677 -3.6764 6.8661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269023583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:31 Heat of formation + Delta-G solvation = -67.664541 kcal Electronic energy + Delta-G solvation = -26720.982386 eV Core-core repulsion = 22575.716603 eV Total energy + Delta-G solvation = -4145.265783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.77993 -39.33948 -37.60318 -37.40199 -36.65725 -35.83374 -34.43737 -32.89519 -31.63111 -30.25997 -29.35154 -27.06637 -25.83949 -25.35369 -23.18183 -23.07795 -20.97007 -19.58200 -19.27120 -18.19561 -17.70927 -17.35809 -16.96227 -16.52416 -16.40203 -16.12986 -15.84755 -15.65540 -15.27857 -15.10789 -14.65980 -14.42684 -13.98622 -13.89798 -13.88314 -13.71212 -13.28473 -13.02546 -12.79318 -12.68991 -12.60300 -12.46839 -12.36396 -12.08775 -11.86030 -11.79138 -11.43721 -11.19850 -10.94384 -10.74742 -10.59634 -10.52923 -10.24032 -10.00388 -9.91902 -9.57302 -9.23648 -8.60717 -8.41538 -8.10717 -6.03833 -4.03100 -0.75416 2.03684 2.19728 2.58465 3.04170 3.31183 3.36018 3.37395 3.42225 3.50746 3.59250 3.72889 3.85398 3.92818 4.05990 4.10891 4.31230 4.39378 4.50271 4.56491 4.61022 4.71463 4.95783 4.97534 5.11201 5.28485 5.34255 5.34862 5.52892 5.61661 5.70121 5.75007 5.83962 5.88191 6.07689 6.11372 6.68906 7.04560 7.22774 7.35860 7.88689 7.98812 8.17605 8.52578 9.07860 9.25290 9.61818 11.08563 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.040375 B = 0.001572 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.339275 B =17810.216715 C =18132.933616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.430 3.570 3 O -0.931 6.931 4 O -0.931 6.931 5 C -0.635 4.635 6 C 0.132 3.868 7 N -0.727 5.727 8 C 0.543 3.457 9 O -0.523 6.523 10 C -0.173 4.173 11 H 0.130 0.870 12 C -0.109 4.109 13 C -0.145 4.145 14 C 0.154 3.846 15 N -0.658 5.658 16 C 0.546 3.454 17 O -0.540 6.540 18 C 0.014 3.986 19 C -0.508 4.508 20 H 0.075 0.925 21 C 0.055 3.945 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.272 1.272 27 C 0.148 3.852 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.404 0.596 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.261 0.739 43 H 0.086 0.914 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.755 7.020 -12.086 36.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.610 3.390 3 O -0.928 6.928 4 O -0.928 6.928 5 C -0.763 4.763 6 C 0.007 3.993 7 N -0.381 5.381 8 C 0.329 3.671 9 O -0.397 6.397 10 C -0.195 4.195 11 H 0.147 0.853 12 C -0.146 4.146 13 C -0.146 4.146 14 C 0.031 3.969 15 N -0.397 5.397 16 C 0.339 3.661 17 O -0.416 6.416 18 C -0.025 4.025 19 C -0.547 4.547 20 H 0.093 0.907 21 C -0.146 4.146 22 N -0.541 5.541 23 Si 0.730 3.270 24 H -0.206 1.206 25 H -0.213 1.213 26 H -0.196 1.196 27 C 0.024 3.976 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.239 0.761 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -31.728 7.798 -13.357 35.297 hybrid contribution -0.459 -0.561 1.180 1.384 sum -32.186 7.237 -12.178 35.166 Atomic orbital electron populations 1.30266 1.26223 1.11757 1.12139 1.07670 0.78506 0.75828 0.77033 1.93641 1.78983 1.34146 1.86050 1.93641 1.78979 1.67058 1.53125 1.30705 1.05344 1.14990 1.25220 1.20898 0.89874 1.00975 0.87580 1.45816 1.08063 1.65212 1.18997 1.19806 0.82065 0.77887 0.87331 1.90767 1.45446 1.49372 1.54161 1.22076 0.98171 1.04714 0.94538 0.85252 1.22768 0.99166 0.95998 0.96656 1.22299 0.89682 1.00351 1.02299 1.22083 0.84807 0.98769 0.91269 1.49981 1.07247 1.47555 1.34901 1.21747 0.77319 0.81815 0.85184 1.90558 1.47535 1.44574 1.58906 1.19189 0.98740 0.94415 0.90120 1.21200 0.92376 1.26093 1.15027 0.90662 1.24999 0.98674 0.95065 0.95827 1.69967 1.35828 1.28395 1.19931 0.86409 0.84736 0.77258 0.78579 1.20594 1.21266 1.19639 1.22295 0.80756 0.93714 1.00860 0.85174 0.84927 0.85168 0.84128 0.84128 0.89649 0.89612 0.76141 0.86875 0.87757 0.90727 0.89860 0.93520 0.93511 0.92944 0.89650 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 0.09 10.62 101.05 1.07 1.16 16 2 S 2.43 8.62 5.36 -107.50 -0.58 8.04 16 3 O -0.93 -7.44 18.10 -57.83 -1.05 -8.49 16 4 O -0.93 -7.45 18.10 -57.83 -1.05 -8.50 16 5 C -0.64 -0.90 5.92 37.16 0.22 -0.68 16 6 C 0.13 0.82 5.68 -4.04 -0.02 0.80 16 7 N -0.73 -4.49 5.56 -60.30 -0.33 -4.83 16 8 C 0.54 5.48 7.61 -10.98 -0.08 5.40 16 9 O -0.52 -7.64 15.30 5.56 0.09 -7.56 16 10 C -0.17 -1.48 6.19 -92.13 -0.57 -2.05 16 11 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 12 C -0.11 -1.03 10.24 -27.07 -0.28 -1.31 16 13 C -0.14 -1.79 3.15 -155.68 -0.49 -2.28 16 14 C 0.15 2.55 7.12 -7.61 -0.05 2.50 16 15 N -0.66 -12.77 3.69 -184.30 -0.68 -13.45 16 16 C 0.55 13.53 8.07 -10.99 -0.09 13.44 16 17 O -0.54 -15.36 16.23 5.56 0.09 -15.27 16 18 C 0.01 0.38 5.28 -29.03 -0.15 0.23 16 19 C -0.51 -15.22 8.92 -34.44 -0.31 -15.53 16 20 H 0.08 2.36 6.75 -52.49 -0.35 2.00 16 21 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 23 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 27 C 0.15 2.06 8.45 -7.48 -0.06 1.99 16 28 H 0.13 -0.25 8.14 -51.93 -0.42 -0.67 16 29 H 0.13 0.00 8.14 -51.92 -0.42 -0.43 16 30 H 0.13 -0.25 8.14 -51.92 -0.42 -0.67 16 31 H 0.14 -0.17 8.14 -51.93 -0.42 -0.59 16 32 H 0.14 -0.17 8.14 -51.92 -0.42 -0.59 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.40 1.03 8.47 -40.82 -0.35 0.68 16 36 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.08 1.37 8.11 -51.93 -0.42 0.94 16 40 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -44.19 392.97 -9.38 -53.57 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -6.60 Total: -6.19 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.92 Total: 5.18 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.28 Total: -44.22 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -1.92 Total: -39.82 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 16 Polarization: 8.62 SS G_CDS: -0.58 Total: 8.04 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -44.19 -9.38 -53.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.091 kcal (2) G-P(sol) polarization free energy of solvation -44.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds