Wall clock time and date at job start Wed Apr 1 2020 03:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 108.57951 * 2 1 4 4 O 1.42095 * 108.57914 * 228.97263 * 2 1 3 5 5 C 1.81407 * 101.91994 * 114.48400 * 2 1 3 6 6 C 1.53001 * 109.47011 * 179.97438 * 5 2 1 7 7 N 1.46497 * 109.46771 * 180.02562 * 6 5 2 8 8 C 1.34781 * 119.99703 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99896 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99905 * 179.97438 * 8 7 6 11 11 H 1.09004 * 115.58740 * 34.17678 * 10 8 7 12 12 C 1.53203 * 117.52315 * 248.34884 * 10 8 7 13 13 C 1.52088 * 117.52158 * 179.97438 * 10 8 7 14 14 C 1.52623 * 129.80840 * 348.35297 * 13 10 8 15 15 N 1.47251 * 87.69268 * 195.57146 * 14 13 10 16 16 C 1.34776 * 135.89799 * 206.22810 * 15 14 13 17 17 O 1.21282 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00035 * 179.97438 * 16 15 14 19 19 C 1.50706 * 109.47294 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99515 * 0.02562 * 19 18 16 21 21 C 1.37870 * 120.00176 * 180.02562 * 19 18 16 22 22 N 1.31520 * 119.99883 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47293 * 89.99746 * 23 21 19 25 25 H 1.48504 * 109.47104 * 209.99992 * 23 21 19 26 26 H 1.48495 * 109.47249 * 329.99739 * 23 21 19 27 27 C 1.47250 * 88.20441 * 26.49059 * 15 14 13 28 28 H 1.08996 * 109.47155 * 305.51824 * 1 2 3 29 29 H 1.08998 * 109.46817 * 65.51321 * 1 2 3 30 30 H 1.09003 * 109.46992 * 185.51187 * 1 2 3 31 31 H 1.08997 * 109.46767 * 60.00290 * 5 2 1 32 32 H 1.08998 * 109.47170 * 300.00551 * 5 2 1 33 33 H 1.09000 * 109.46976 * 60.00037 * 6 5 2 34 34 H 1.08996 * 109.47196 * 300.00297 * 6 5 2 35 35 H 0.96996 * 120.00456 * 359.97438 * 7 6 5 36 36 H 1.09006 * 117.51991 * 145.16342 * 12 10 8 37 37 H 1.08996 * 117.57174 * 359.97438 * 12 10 8 38 38 H 1.08993 * 113.51370 * 80.86286 * 14 13 10 39 39 H 1.09000 * 113.51234 * 310.28017 * 14 13 10 40 40 H 1.09001 * 109.46665 * 60.00498 * 18 16 15 41 41 H 1.09000 * 109.47722 * 300.00830 * 18 16 15 42 42 H 0.97004 * 119.99507 * 180.02562 * 22 21 19 43 43 H 1.09001 * 113.51388 * 88.21127 * 27 15 14 44 44 H 1.08997 * 113.51587 * 218.80867 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8195 1.7980 7 7 4.0080 -1.4141 3.1023 8 6 5.2892 -1.5876 3.4829 9 8 6.1916 -1.2518 2.7454 10 6 5.6005 -2.1987 4.8248 11 1 4.9019 -2.9618 5.1680 12 6 6.2373 -1.2937 5.8843 13 6 7.0653 -2.3689 5.1968 14 6 8.3152 -2.2355 4.3310 15 7 9.0547 -2.9343 5.3955 16 6 10.3328 -2.9722 5.8215 17 8 11.1776 -2.3033 5.2649 18 6 10.7120 -3.8449 6.9900 19 6 12.1878 -3.7066 7.2624 20 1 12.7906 -3.0518 6.6507 21 6 12.7682 -4.4158 8.2924 22 7 12.0341 -5.2136 9.0369 23 14 14.5973 -4.2437 8.6304 24 1 14.8203 -3.1386 9.5969 25 1 15.1169 -5.5126 9.2007 26 1 15.3089 -3.9431 7.3622 27 6 7.7900 -3.5785 5.7875 28 1 -0.3633 0.5970 0.8364 29 1 -0.3633 0.4260 -0.9352 30 1 -0.3633 -1.0229 0.0987 31 1 1.7610 -1.7369 1.6665 32 1 1.7609 -0.1170 2.4043 33 1 4.1335 0.1816 1.7466 34 1 4.1328 -1.4383 1.0090 35 1 3.2863 -1.6823 3.6922 36 1 5.9574 -1.4618 6.9244 37 1 6.4316 -0.2566 5.6112 38 1 8.6347 -1.2038 4.1847 39 1 8.2603 -2.7974 3.3986 40 1 10.4811 -4.8844 6.7571 41 1 10.1497 -3.5366 7.8715 42 1 12.4425 -5.7123 9.7618 43 1 7.5915 -4.5078 5.2534 44 1 7.6677 -3.6764 6.8661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269023583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:30 Heat of formation + Delta-G solvation = -105.691123 kcal Electronic energy + Delta-G solvation = -26722.631343 eV Core-core repulsion = 22575.716603 eV Total energy + Delta-G solvation = -4146.914739 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.84369 -40.50876 -39.02697 -38.02021 -37.07923 -36.51170 -35.58105 -35.13032 -32.10706 -31.38080 -30.31042 -28.71606 -27.13723 -25.99624 -25.18179 -23.69346 -21.78330 -20.67751 -19.76745 -19.52791 -18.60717 -18.39785 -17.85723 -17.51603 -17.28349 -17.05617 -16.88797 -16.75484 -16.41385 -16.31707 -15.99372 -15.41503 -15.16918 -15.02182 -14.68390 -14.22826 -13.99202 -13.95172 -13.86588 -13.73461 -13.37256 -13.24774 -13.15124 -13.04722 -13.00386 -12.82967 -12.78786 -12.60375 -12.11158 -12.06758 -11.90418 -11.66354 -11.64256 -11.45773 -11.24153 -10.87220 -10.64335 -10.49054 -10.21504 -9.68296 -8.27484 -6.35238 -0.98244 1.37525 1.39101 1.40143 1.52879 1.77705 1.85704 1.88992 2.08177 2.42240 2.76626 2.79789 3.07232 3.12006 3.13704 3.42055 3.45602 3.79726 3.84049 3.92006 4.05420 4.15524 4.29066 4.33383 4.36529 4.51003 4.53206 4.55859 4.57761 4.71065 4.78584 4.85834 4.88924 4.93276 5.03866 5.04316 5.14592 5.22686 5.29744 5.70730 6.05720 6.51829 6.70711 6.84637 7.22601 7.30514 7.39311 8.84619 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.040375 B = 0.001572 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.339275 B =17810.216715 C =18132.933616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.627 4.627 2 S 2.418 3.582 3 O -0.991 6.991 4 O -0.991 6.991 5 C -0.612 4.612 6 C 0.117 3.883 7 N -0.702 5.702 8 C 0.532 3.468 9 O -0.580 6.580 10 C -0.135 4.135 11 H 0.180 0.820 12 C -0.099 4.099 13 C -0.160 4.160 14 C 0.148 3.852 15 N -0.663 5.663 16 C 0.542 3.458 17 O -0.594 6.594 18 C 0.024 3.976 19 C -0.544 4.544 20 H 0.050 0.950 21 C 0.014 3.986 22 N -0.920 5.920 23 Si 0.966 3.034 24 H -0.269 1.269 25 H -0.269 1.269 26 H -0.278 1.278 27 C 0.149 3.851 28 H 0.159 0.841 29 H 0.133 0.867 30 H 0.159 0.841 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.427 0.573 36 H 0.145 0.855 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.269 0.731 43 H 0.108 0.892 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.932 5.942 -10.088 39.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.781 4.781 2 S 2.606 3.394 3 O -0.988 6.988 4 O -0.988 6.988 5 C -0.741 4.741 6 C -0.009 4.009 7 N -0.356 5.356 8 C 0.319 3.681 9 O -0.459 6.459 10 C -0.156 4.156 11 H 0.198 0.802 12 C -0.136 4.136 13 C -0.162 4.162 14 C 0.025 3.975 15 N -0.399 5.399 16 C 0.335 3.665 17 O -0.474 6.474 18 C -0.015 4.015 19 C -0.582 4.582 20 H 0.069 0.931 21 C -0.185 4.185 22 N -0.559 5.559 23 Si 0.790 3.210 24 H -0.195 1.195 25 H -0.194 1.194 26 H -0.203 1.203 27 C 0.027 3.973 28 H 0.177 0.823 29 H 0.152 0.848 30 H 0.177 0.823 31 H 0.197 0.803 32 H 0.197 0.803 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.266 0.734 36 H 0.162 0.838 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.126 0.874 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -36.008 6.706 -11.363 38.349 hybrid contribution 0.636 -0.223 0.525 0.854 sum -35.372 6.483 -10.839 37.559 Atomic orbital electron populations 1.30032 1.20103 1.14379 1.13602 1.07506 0.80619 0.74063 0.77259 1.93569 1.81389 1.36782 1.87058 1.93569 1.81384 1.67726 1.56087 1.30507 1.01845 1.17798 1.23975 1.20950 0.93364 0.99499 0.87054 1.45600 1.07491 1.63517 1.19041 1.20222 0.82681 0.77539 0.87612 1.90769 1.47374 1.51808 1.55925 1.22232 0.95587 1.04567 0.93208 0.80248 1.22972 0.97257 0.94886 0.98510 1.21984 0.90583 1.01062 1.02531 1.22169 0.87024 0.96854 0.91422 1.49899 1.07039 1.47652 1.35309 1.21309 0.78873 0.81380 0.84943 1.90512 1.49846 1.46643 1.60430 1.18960 0.97233 0.94418 0.90873 1.21363 0.94165 1.26856 1.15836 0.93141 1.25761 1.03212 0.94330 0.95170 1.70021 1.37577 1.28327 1.20015 0.85441 0.79145 0.78166 0.78225 1.19454 1.19378 1.20334 1.22606 0.77478 0.95004 1.02170 0.82285 0.84809 0.82269 0.80283 0.80332 0.91710 0.91597 0.73400 0.83761 0.88829 0.93397 0.90116 0.94033 0.93775 0.92204 0.87425 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 2.52 10.62 113.37 1.20 3.73 16 2 S 2.42 15.58 5.36 -56.49 -0.30 15.27 16 3 O -0.99 -16.88 18.10 -127.37 -2.30 -19.18 16 4 O -0.99 -16.84 18.10 -127.37 -2.30 -19.15 16 5 C -0.61 0.27 5.92 71.98 0.43 0.69 16 6 C 0.12 1.34 5.68 86.38 0.49 1.83 16 7 N -0.70 -6.60 5.56 -463.06 -2.57 -9.17 16 8 C 0.53 9.79 7.61 87.66 0.67 10.46 16 9 O -0.58 -17.44 15.30 -3.03 -0.05 -17.49 16 10 C -0.13 -1.79 6.19 -11.77 -0.07 -1.86 16 11 H 0.18 0.69 8.14 -2.38 -0.02 0.67 16 12 C -0.10 -1.58 10.24 30.38 0.31 -1.27 16 13 C -0.16 -3.68 3.15 -52.93 -0.17 -3.85 16 14 C 0.15 5.10 7.12 83.66 0.60 5.70 16 15 N -0.66 -26.39 3.69 -855.39 -3.16 -29.55 16 16 C 0.54 28.16 8.07 87.66 0.71 28.86 16 17 O -0.59 -35.94 16.23 -3.04 -0.05 -35.98 16 18 C 0.02 1.34 5.28 29.10 0.15 1.49 16 19 C -0.54 -33.69 8.92 25.60 0.23 -33.46 16 20 H 0.05 3.32 6.75 -2.91 -0.02 3.30 16 21 C 0.01 0.84 5.46 84.65 0.46 1.31 16 22 N -0.92 -54.24 13.29 21.45 0.28 -53.95 16 23 Si 0.97 46.48 29.54 68.60 2.03 48.51 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 27 C 0.15 3.90 8.45 83.74 0.71 4.61 16 28 H 0.16 -1.44 8.14 -2.39 -0.02 -1.46 16 29 H 0.13 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.16 -1.45 8.14 -2.39 -0.02 -1.47 16 31 H 0.18 -1.39 8.14 -2.39 -0.02 -1.41 16 32 H 0.18 -1.37 8.14 -2.39 -0.02 -1.39 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.43 -0.07 8.47 -92.71 -0.79 -0.85 16 36 H 0.14 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 40 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.04 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -105.95 392.97 -2.48 -108.43 By element: Atomic # 1 Polarization: -6.21 SS G_CDS: 0.23 Total: -5.98 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 5.71 Total: 18.24 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -5.44 Total: -92.67 kcal Atomic # 8 Polarization: -87.10 SS G_CDS: -4.71 Total: -91.80 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Atomic # 16 Polarization: 15.58 SS G_CDS: -0.30 Total: 15.27 kcal Total: -105.95 -2.48 -108.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.735 kcal (2) G-P(sol) polarization free energy of solvation -105.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds