Wall clock time and date at job start Wed Apr 1 2020 01:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20749 * 120.00024 * 2 1 4 4 C 1.50701 * 119.99631 * 179.97438 * 2 1 3 5 5 H 1.09003 * 109.47646 * 45.00345 * 4 2 1 6 6 C 1.52996 * 109.47507 * 285.00091 * 4 2 1 7 7 N 1.46502 * 109.46917 * 165.00201 * 4 2 1 8 8 C 1.46927 * 124.37196 * 240.15974 * 7 4 2 9 9 C 1.54800 * 105.59722 * 163.51265 * 8 7 4 10 10 C 1.53215 * 101.38926 * 23.97084 * 9 8 7 11 11 C 1.53708 * 111.52716 * 98.84380 * 10 9 8 12 12 C 1.54582 * 102.78255 * 153.98141 * 11 10 9 13 13 N 1.47142 * 107.32927 * 339.11706 * 12 11 10 14 14 S 1.65599 * 125.60588 * 179.09968 * 13 12 11 15 15 O 1.42104 * 106.40143 * 203.51641 * 14 13 12 16 16 O 1.42104 * 106.40427 * 336.43771 * 14 13 12 17 17 C 1.76198 * 107.21627 * 89.98147 * 14 13 12 18 18 H 1.07994 * 120.00233 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99836 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00118 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99783 * 179.97438 * 19 17 14 22 22 H 1.48495 * 109.47615 * 89.99671 * 21 19 17 23 23 H 1.48504 * 109.46803 * 209.99654 * 21 19 17 24 24 H 1.48500 * 109.47269 * 329.99112 * 21 19 17 25 25 C 1.47700 * 108.78355 * 359.06862 * 13 12 11 26 26 C 1.34890 * 124.37798 * 60.02125 * 7 4 2 27 27 O 1.21283 * 125.22346 * 1.23263 * 26 7 4 28 28 H 1.08997 * 109.46995 * 239.99680 * 1 2 3 29 29 H 1.08992 * 109.47031 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46816 * 120.00531 * 1 2 3 31 31 H 1.09010 * 109.47118 * 300.00076 * 6 4 2 32 32 H 1.08995 * 109.47302 * 59.99767 * 6 4 2 33 33 H 1.09003 * 109.47413 * 180.02562 * 6 4 2 34 34 H 1.08999 * 110.38070 * 44.38343 * 8 7 4 35 35 H 1.09000 * 110.02637 * 282.45617 * 8 7 4 36 36 H 1.08995 * 111.04001 * 265.94644 * 9 8 7 37 37 H 1.08992 * 111.03878 * 141.99587 * 9 8 7 38 38 H 1.09000 * 110.74686 * 272.30232 * 11 10 9 39 39 H 1.08995 * 110.74908 * 35.47435 * 11 10 9 40 40 H 1.09000 * 109.87301 * 98.55167 * 12 11 10 41 41 H 1.09001 * 109.87265 * 219.54372 * 12 11 10 42 42 H 0.96995 * 120.00044 * 180.02562 * 20 19 17 43 43 H 1.08998 * 110.38993 * 263.78893 * 25 13 12 44 44 H 1.09003 * 110.39161 * 141.40820 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2604 -1.3052 0.0006 5 1 1.8128 -1.9835 -0.7258 6 6 2.1921 -1.9329 1.3941 7 7 3.6601 -1.0612 -0.3570 8 6 4.3329 -1.6494 -1.5231 9 6 5.6126 -0.8046 -1.7353 10 6 5.8361 -0.2359 -0.3302 11 6 6.8918 -1.0420 0.4432 12 6 7.4468 -0.0050 1.4463 13 7 7.1347 1.3306 0.9135 14 16 7.5071 2.7704 1.6420 15 8 6.5923 3.7286 1.1280 16 8 7.6459 2.4943 3.0290 17 6 9.1029 3.2481 1.0675 18 1 9.6344 2.6216 0.3666 19 6 9.6735 4.4213 1.5137 20 7 9.0265 5.1840 2.3677 21 14 11.3655 4.9274 0.9053 22 1 11.2243 5.7532 -0.3207 23 1 12.0541 5.7173 1.9575 24 1 12.1636 3.7139 0.5955 25 6 6.4354 1.1759 -0.3782 26 6 4.4967 -0.2654 0.3403 27 8 4.2103 0.3305 1.3571 28 1 -0.3633 -0.5139 0.8899 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 2.6398 -1.2546 2.1206 32 1 1.1508 -2.1144 1.6602 33 1 2.7374 -2.8768 1.3947 34 1 3.6913 -1.5889 -2.4022 35 1 4.5959 -2.6872 -1.3182 36 1 5.4396 -0.0068 -2.4574 37 1 6.4496 -1.4323 -2.0410 38 1 6.4307 -1.8786 0.9681 39 1 7.6764 -1.3936 -0.2268 40 1 6.9701 -0.1371 2.4176 41 1 8.5258 -0.1244 1.5438 42 1 9.4277 6.0095 2.6813 43 1 7.1409 1.2611 -1.2047 44 1 5.6453 1.9208 -0.4740 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275491582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:20 Heat of formation + Delta-G solvation = -143.797010 kcal Electronic energy + Delta-G solvation = -30019.593697 eV Core-core repulsion = 25871.026562 eV Total energy + Delta-G solvation = -4148.567135 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.21966 -39.34135 -37.02046 -36.20317 -35.04829 -33.80150 -33.76924 -32.97436 -30.94242 -29.58518 -29.00886 -27.90854 -26.02597 -25.04239 -23.68482 -21.85997 -21.56710 -19.97756 -18.62741 -18.48406 -17.44845 -16.80039 -16.32243 -16.05668 -15.96002 -15.34265 -15.01696 -14.94119 -14.45558 -14.36769 -14.01006 -13.87429 -13.61881 -13.49955 -13.02078 -12.96436 -12.86321 -12.66359 -12.43716 -12.36616 -12.24775 -12.14465 -11.92278 -11.89140 -11.81580 -11.17117 -11.15274 -11.13225 -10.82928 -10.62072 -10.53899 -10.16413 -10.10199 -9.99606 -9.90095 -9.30464 -9.16649 -8.77529 -8.65494 -7.99424 -6.59810 -5.22288 1.88480 2.38356 2.71553 2.87903 3.12006 3.18060 3.24718 3.83267 4.12943 4.26103 4.33441 4.52730 4.63633 4.72061 4.73149 4.77601 4.84100 5.05219 5.05929 5.09982 5.15002 5.20857 5.28511 5.34687 5.45457 5.48731 5.66379 5.68430 5.74090 5.82003 5.88489 5.96333 6.00438 6.15455 6.19598 6.28001 6.46015 6.49503 6.51640 6.99655 7.11388 7.42106 7.45517 7.62870 8.06922 8.43148 8.97470 10.33589 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.003520 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.064774 B = 7952.503808 C = 8467.809241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.327 3.673 3 O -0.416 6.416 4 C 0.113 3.887 5 H 0.112 0.888 6 C -0.162 4.162 7 N -0.627 5.627 8 C 0.109 3.891 9 C -0.119 4.119 10 C -0.110 4.110 11 C -0.101 4.101 12 C 0.128 3.872 13 N -1.014 6.014 14 S 2.731 3.269 15 O -0.999 6.999 16 O -1.001 7.001 17 C -1.022 5.022 18 H 0.102 0.898 19 C 0.131 3.869 20 N -0.846 5.846 21 Si 0.921 3.079 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.263 1.263 25 C 0.150 3.850 26 C 0.542 3.458 27 O -0.486 6.486 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.290 0.710 43 H 0.070 0.930 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.284 -20.118 -10.924 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.197 3.803 3 O -0.285 6.285 4 C 0.009 3.991 5 H 0.130 0.870 6 C -0.220 4.220 7 N -0.364 5.364 8 C -0.014 4.014 9 C -0.157 4.157 10 C -0.115 4.115 11 C -0.140 4.140 12 C 0.001 3.999 13 N -0.849 5.849 14 S 2.833 3.167 15 O -0.990 6.990 16 O -0.991 6.991 17 C -1.155 5.155 18 H 0.120 0.880 19 C -0.086 4.086 20 N -0.476 5.476 21 Si 0.745 3.255 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.187 1.187 25 C 0.023 3.977 26 C 0.329 3.671 27 O -0.356 6.356 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.747 -18.518 -9.536 24.420 hybrid contribution 1.236 0.049 -0.758 1.451 sum -11.511 -18.468 -10.295 24.074 Atomic orbital electron populations 1.22287 0.93928 1.05228 1.04202 1.25023 0.92076 0.90666 0.72517 1.90557 1.71510 1.34289 1.32117 1.21341 0.81863 0.96551 0.99392 0.87028 1.22075 1.02915 1.01697 0.95298 1.48358 1.09685 1.49464 1.28905 1.22118 0.94127 0.97128 0.88041 1.22491 0.97486 1.00030 0.95722 1.21600 0.94572 0.99156 0.96220 1.22411 0.96457 0.97250 0.97924 1.21519 0.99649 0.81963 0.96745 1.59129 1.73064 1.20804 1.31885 1.00071 0.75379 0.68991 0.72278 1.93354 1.66485 1.58118 1.81040 1.93342 1.88737 1.84007 1.33063 1.30698 1.27150 1.16531 1.41168 0.88007 1.24773 0.99235 0.93541 0.91066 1.69915 1.38672 1.12836 1.26131 0.86166 0.81113 0.79117 0.79127 1.19207 1.19978 1.18684 1.21457 0.95679 0.93559 0.87016 1.20057 0.85767 0.77496 0.83829 1.90751 1.79096 1.42660 1.23124 0.89019 0.89797 0.89181 0.90346 0.90924 0.91190 0.90712 0.91097 0.89380 0.88593 0.90678 0.89520 0.91740 0.91672 0.89931 0.91149 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.43 10.24 36.01 0.37 -1.06 16 2 C 0.33 3.88 6.41 -29.03 -0.19 3.70 16 3 O -0.42 -7.53 15.02 -14.05 -0.21 -7.75 16 4 C 0.11 1.06 3.22 -69.08 -0.22 0.84 16 5 H 0.11 0.58 8.07 -51.93 -0.42 0.16 16 6 C -0.16 -1.46 9.17 37.16 0.34 -1.11 16 7 N -0.63 -7.42 2.74 -166.31 -0.46 -7.88 16 8 C 0.11 0.84 7.33 -2.86 -0.02 0.82 16 9 C -0.12 -1.09 6.26 -25.67 -0.16 -1.25 16 10 C -0.11 -1.61 0.67 -155.38 -0.10 -1.71 16 11 C -0.10 -1.33 5.95 -25.53 -0.15 -1.48 16 12 C 0.13 2.38 6.96 -2.86 -0.02 2.36 16 13 N -1.01 -23.17 3.71 -111.82 -0.41 -23.59 16 14 S 2.73 80.47 5.22 -107.50 -0.56 79.91 16 15 O -1.00 -32.48 17.37 -57.17 -0.99 -33.47 16 16 O -1.00 -32.18 17.60 -57.17 -1.01 -33.18 16 17 C -1.02 -29.88 9.75 30.60 0.30 -29.59 16 18 H 0.10 2.70 7.81 -52.49 -0.41 2.29 16 19 C 0.13 3.86 5.46 -17.82 -0.10 3.76 16 20 N -0.85 -26.27 13.19 55.43 0.73 -25.54 16 21 Si 0.92 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 25 C 0.15 2.85 5.93 -3.15 -0.02 2.83 16 26 C 0.54 9.08 5.40 -11.36 -0.06 9.02 16 27 O -0.49 -10.65 14.88 -14.51 -0.22 -10.86 16 28 H 0.09 0.49 7.89 -51.93 -0.41 0.08 16 29 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 1.03 6.77 -51.92 -0.35 0.68 16 32 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.80 7.97 -51.93 -0.41 0.38 16 37 H 0.10 0.62 7.61 -51.93 -0.40 0.23 16 38 H 0.07 0.86 8.00 -51.93 -0.42 0.45 16 39 H 0.09 0.88 7.73 -51.93 -0.40 0.48 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.29 8.06 8.31 -40.82 -0.34 7.72 16 43 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 44 H 0.08 1.75 7.69 -51.93 -0.40 1.35 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -44.38 374.13 -9.08 -53.47 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.54 Total: -0.22 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.04 Total: -12.88 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.14 Total: -57.01 kcal Atomic # 8 Polarization: -82.84 SS G_CDS: -2.43 Total: -85.26 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 80.47 SS G_CDS: -0.56 Total: 79.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -44.38 -9.08 -53.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275491582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.331 kcal (2) G-P(sol) polarization free energy of solvation -44.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds