Wall clock time and date at job start Wed Apr 1 2020 01:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20749 * 120.00024 * 2 1 4 4 C 1.50701 * 119.99631 * 179.97438 * 2 1 3 5 5 H 1.09003 * 109.47646 * 45.00345 * 4 2 1 6 6 C 1.52996 * 109.47507 * 285.00091 * 4 2 1 7 7 N 1.46502 * 109.46917 * 165.00201 * 4 2 1 8 8 C 1.46927 * 124.37196 * 240.15974 * 7 4 2 9 9 C 1.54800 * 105.59722 * 163.51265 * 8 7 4 10 10 C 1.53215 * 101.38926 * 23.97084 * 9 8 7 11 11 C 1.53708 * 111.52716 * 98.84380 * 10 9 8 12 12 C 1.54582 * 102.78255 * 153.98141 * 11 10 9 13 13 N 1.47142 * 107.32927 * 339.11706 * 12 11 10 14 14 S 1.65599 * 125.60588 * 179.09968 * 13 12 11 15 15 O 1.42104 * 106.40143 * 203.51641 * 14 13 12 16 16 O 1.42104 * 106.40427 * 336.43771 * 14 13 12 17 17 C 1.76198 * 107.21627 * 89.98147 * 14 13 12 18 18 H 1.07994 * 120.00233 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99836 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00118 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99783 * 179.97438 * 19 17 14 22 22 H 1.48495 * 109.47615 * 89.99671 * 21 19 17 23 23 H 1.48504 * 109.46803 * 209.99654 * 21 19 17 24 24 H 1.48500 * 109.47269 * 329.99112 * 21 19 17 25 25 C 1.47700 * 108.78355 * 359.06862 * 13 12 11 26 26 C 1.34890 * 124.37798 * 60.02125 * 7 4 2 27 27 O 1.21283 * 125.22346 * 1.23263 * 26 7 4 28 28 H 1.08997 * 109.46995 * 239.99680 * 1 2 3 29 29 H 1.08992 * 109.47031 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46816 * 120.00531 * 1 2 3 31 31 H 1.09010 * 109.47118 * 300.00076 * 6 4 2 32 32 H 1.08995 * 109.47302 * 59.99767 * 6 4 2 33 33 H 1.09003 * 109.47413 * 180.02562 * 6 4 2 34 34 H 1.08999 * 110.38070 * 44.38343 * 8 7 4 35 35 H 1.09000 * 110.02637 * 282.45617 * 8 7 4 36 36 H 1.08995 * 111.04001 * 265.94644 * 9 8 7 37 37 H 1.08992 * 111.03878 * 141.99587 * 9 8 7 38 38 H 1.09000 * 110.74686 * 272.30232 * 11 10 9 39 39 H 1.08995 * 110.74908 * 35.47435 * 11 10 9 40 40 H 1.09000 * 109.87301 * 98.55167 * 12 11 10 41 41 H 1.09001 * 109.87265 * 219.54372 * 12 11 10 42 42 H 0.96995 * 120.00044 * 180.02562 * 20 19 17 43 43 H 1.08998 * 110.38993 * 263.78893 * 25 13 12 44 44 H 1.09003 * 110.39161 * 141.40820 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2604 -1.3052 0.0006 5 1 1.8128 -1.9835 -0.7258 6 6 2.1921 -1.9329 1.3941 7 7 3.6601 -1.0612 -0.3570 8 6 4.3329 -1.6494 -1.5231 9 6 5.6126 -0.8046 -1.7353 10 6 5.8361 -0.2359 -0.3302 11 6 6.8918 -1.0420 0.4432 12 6 7.4468 -0.0050 1.4463 13 7 7.1347 1.3306 0.9135 14 16 7.5071 2.7704 1.6420 15 8 6.5923 3.7286 1.1280 16 8 7.6459 2.4943 3.0290 17 6 9.1029 3.2481 1.0675 18 1 9.6344 2.6216 0.3666 19 6 9.6735 4.4213 1.5137 20 7 9.0265 5.1840 2.3677 21 14 11.3655 4.9274 0.9053 22 1 11.2243 5.7532 -0.3207 23 1 12.0541 5.7173 1.9575 24 1 12.1636 3.7139 0.5955 25 6 6.4354 1.1759 -0.3782 26 6 4.4967 -0.2654 0.3403 27 8 4.2103 0.3305 1.3571 28 1 -0.3633 -0.5139 0.8899 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 2.6398 -1.2546 2.1206 32 1 1.1508 -2.1144 1.6602 33 1 2.7374 -2.8768 1.3947 34 1 3.6913 -1.5889 -2.4022 35 1 4.5959 -2.6872 -1.3182 36 1 5.4396 -0.0068 -2.4574 37 1 6.4496 -1.4323 -2.0410 38 1 6.4307 -1.8786 0.9681 39 1 7.6764 -1.3936 -0.2268 40 1 6.9701 -0.1371 2.4176 41 1 8.5258 -0.1244 1.5438 42 1 9.4277 6.0095 2.6813 43 1 7.1409 1.2611 -1.2047 44 1 5.6453 1.9208 -0.4740 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275491582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:19 Heat of formation + Delta-G solvation = -181.218670 kcal Electronic energy + Delta-G solvation = -30021.216422 eV Core-core repulsion = 25871.026562 eV Total energy + Delta-G solvation = -4150.189859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.26183 -40.40531 -38.35860 -37.49812 -37.33323 -36.21349 -35.25607 -34.76190 -31.97092 -30.69796 -30.02187 -28.87069 -28.33021 -26.00936 -24.66325 -23.29946 -22.45369 -20.97240 -20.81984 -19.55652 -19.33257 -18.39789 -17.76072 -17.25625 -17.03337 -16.95599 -16.59188 -16.12891 -15.92949 -15.79765 -15.46024 -15.30351 -14.77972 -14.73371 -14.48356 -14.12803 -14.03553 -13.82388 -13.63053 -13.50762 -13.33815 -13.24531 -13.03978 -13.03370 -13.00940 -12.77008 -12.67385 -12.60875 -12.56327 -12.35856 -12.30224 -12.24099 -11.87974 -11.58058 -11.29141 -11.02662 -10.80680 -10.48360 -9.79087 -9.54772 -8.78607 -7.56488 0.21491 1.00630 1.30550 1.33529 1.50211 1.60273 2.01754 2.18537 2.52737 2.80807 3.03915 3.35351 3.40916 3.48710 3.77264 3.91425 3.98974 4.06337 4.12982 4.17253 4.24076 4.34853 4.46137 4.53263 4.55156 4.62298 4.63596 4.67433 4.68759 4.78804 4.81297 4.83913 4.92747 5.08827 5.11679 5.12080 5.19131 5.24617 5.26875 5.33320 5.69876 5.79283 5.85396 6.15470 6.61224 6.70097 7.32705 8.17608 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.003520 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.064774 B = 7952.503808 C = 8467.809241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.320 3.680 3 O -0.496 6.496 4 C 0.104 3.896 5 H 0.174 0.826 6 C -0.156 4.156 7 N -0.621 5.621 8 C 0.104 3.896 9 C -0.110 4.110 10 C -0.111 4.111 11 C -0.081 4.081 12 C 0.111 3.889 13 N -1.018 6.018 14 S 2.723 3.277 15 O -1.051 7.051 16 O -1.048 7.048 17 C -1.035 5.035 18 H 0.128 0.872 19 C 0.061 3.939 20 N -0.901 5.901 21 Si 1.003 2.997 22 H -0.251 1.251 23 H -0.262 1.262 24 H -0.240 1.240 25 C 0.139 3.861 26 C 0.523 3.477 27 O -0.561 6.561 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.132 0.868 31 H 0.023 0.977 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.140 0.860 38 H 0.096 0.904 39 H 0.135 0.865 40 H 0.032 0.968 41 H 0.079 0.921 42 H 0.300 0.700 43 H 0.103 0.897 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.316 -24.612 -14.821 30.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.196 3.804 3 O -0.371 6.371 4 C 0.001 3.999 5 H 0.191 0.809 6 C -0.214 4.214 7 N -0.356 5.356 8 C -0.017 4.017 9 C -0.148 4.148 10 C -0.117 4.117 11 C -0.120 4.120 12 C -0.014 4.014 13 N -0.857 5.857 14 S 2.828 3.172 15 O -1.041 7.041 16 O -1.038 7.038 17 C -1.169 5.169 18 H 0.146 0.854 19 C -0.151 4.151 20 N -0.532 5.532 21 Si 0.820 3.180 22 H -0.175 1.175 23 H -0.186 1.186 24 H -0.162 1.162 25 C 0.014 3.986 26 C 0.311 3.689 27 O -0.437 6.437 28 H 0.134 0.866 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.042 0.958 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.158 0.842 38 H 0.115 0.885 39 H 0.153 0.847 40 H 0.050 0.950 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.850 -23.094 -13.471 29.244 hybrid contribution 0.770 1.377 0.470 1.646 sum -11.080 -21.718 -13.001 27.630 Atomic orbital electron populations 1.22332 0.90406 1.05014 1.07225 1.26074 0.94377 0.90600 0.69314 1.90564 1.73313 1.37030 1.36190 1.21789 0.80719 0.96144 1.01241 0.80923 1.22050 1.04793 1.00896 0.93672 1.48532 1.10266 1.47782 1.29006 1.22558 0.93491 0.98234 0.87400 1.22642 1.00022 1.00619 0.91526 1.21686 0.93620 0.96329 1.00027 1.22476 0.97025 0.95502 0.96948 1.21893 1.00589 0.81567 0.97344 1.58507 1.73382 1.20479 1.33329 0.99739 0.75782 0.69871 0.71804 1.93275 1.68114 1.61199 1.81519 1.93263 1.89236 1.85057 1.36231 1.30919 1.26622 1.17566 1.41821 0.85387 1.26298 1.04888 0.93156 0.90741 1.70044 1.41435 1.13872 1.27853 0.84968 0.74141 0.79790 0.79146 1.17521 1.18579 1.16243 1.21781 0.95104 0.95829 0.85935 1.20625 0.87490 0.77451 0.83359 1.90712 1.80616 1.45820 1.26575 0.86629 0.91819 0.84951 0.95753 0.87709 0.89311 0.87664 0.87189 0.89623 0.84237 0.88540 0.84673 0.94955 0.90305 0.89009 0.87957 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 10.24 71.24 0.73 -1.72 16 2 C 0.32 7.62 6.41 29.10 0.19 7.81 16 3 O -0.50 -19.62 15.02 17.76 0.27 -19.36 16 4 C 0.10 1.70 3.22 44.24 0.14 1.84 16 5 H 0.17 0.71 8.07 -2.39 -0.02 0.69 16 6 C -0.16 -2.56 9.17 71.98 0.66 -1.90 16 7 N -0.62 -13.39 2.74 -798.40 -2.19 -15.57 16 8 C 0.10 1.04 7.33 86.91 0.64 1.68 16 9 C -0.11 -1.53 6.26 31.28 0.20 -1.33 16 10 C -0.11 -3.11 0.67 -52.74 -0.04 -3.14 16 11 C -0.08 -1.91 5.95 31.37 0.19 -1.72 16 12 C 0.11 4.26 6.96 86.80 0.60 4.86 16 13 N -1.02 -49.17 3.71 -507.68 -1.88 -51.06 16 14 S 2.72 172.14 5.22 -56.49 -0.29 171.85 16 15 O -1.05 -74.48 17.37 -128.00 -2.22 -76.70 16 16 O -1.05 -72.93 17.60 -128.00 -2.25 -75.18 16 17 C -1.03 -62.09 9.75 67.73 0.66 -61.43 16 18 H 0.13 6.73 7.81 -2.91 -0.02 6.71 16 19 C 0.06 3.65 5.46 84.65 0.46 4.11 16 20 N -0.90 -58.42 13.19 21.45 0.28 -58.14 16 21 Si 1.00 43.31 29.54 68.60 2.03 45.33 16 22 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.24 -9.39 7.11 99.48 0.71 -8.68 16 25 C 0.14 5.49 5.93 86.30 0.51 6.01 16 26 C 0.52 18.00 5.40 87.36 0.47 18.48 16 27 O -0.56 -27.09 14.88 16.14 0.24 -26.85 16 28 H 0.12 0.94 7.89 -2.39 -0.02 0.92 16 29 H 0.06 1.09 8.12 -2.39 -0.02 1.07 16 30 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.02 0.67 6.77 -2.38 -0.02 0.65 16 32 H 0.10 0.97 7.89 -2.39 -0.02 0.95 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.09 1.26 7.97 -2.39 -0.02 1.24 16 37 H 0.14 0.78 7.61 -2.39 -0.02 0.76 16 38 H 0.10 1.91 8.00 -2.39 -0.02 1.89 16 39 H 0.14 1.92 7.73 -2.39 -0.02 1.91 16 40 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.30 17.33 8.31 -92.71 -0.77 16.56 16 43 H 0.10 3.27 8.04 -2.39 -0.02 3.25 16 44 H 0.03 1.59 7.69 -2.39 -0.02 1.57 16 Total: -1.00 -115.78 374.13 0.39 -115.39 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 1.01 Total: 16.76 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 5.41 Total: -26.47 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -3.79 Total: -124.77 kcal Atomic # 8 Polarization: -194.11 SS G_CDS: -3.97 Total: -198.08 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 172.14 SS G_CDS: -0.29 Total: 171.85 kcal Total: -115.78 0.39 -115.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275491582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.830 kcal (2) G-P(sol) polarization free energy of solvation -115.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -115.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds