Wall clock time and date at job start Wed Apr 1 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47485 * 240.00356 * 3 2 1 5 5 H 1.48507 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47021 * 120.00147 * 3 2 1 7 7 C 1.38813 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00140 * 196.45618 * 7 2 1 9 9 N 1.36935 * 120.00021 * 16.45706 * 7 2 1 10 10 C 1.46971 * 120.59380 * 204.98664 * 9 7 2 11 11 C 1.53370 * 108.63111 * 235.24585 * 10 9 7 12 12 N 1.46961 * 108.63735 * 310.57310 * 11 10 9 13 13 C 1.34779 * 120.59673 * 235.20978 * 12 11 10 14 14 O 1.21584 * 119.99517 * 5.74638 * 13 12 11 15 15 C 1.47651 * 120.00234 * 185.47789 * 13 12 11 16 16 C 1.39875 * 120.03586 * 36.48070 * 15 13 12 17 17 C 1.37522 * 120.09391 * 180.02562 * 16 15 13 18 18 C 1.39334 * 120.25349 * 359.97438 * 17 16 15 19 19 N 1.38868 * 119.51157 * 180.02562 * 18 17 16 20 20 H 0.97001 * 119.90291 * 359.97438 * 19 18 17 21 21 C 1.34813 * 120.19663 * 179.97438 * 19 18 17 22 22 O 1.21439 * 120.32000 * 180.02562 * 21 19 18 23 23 C 1.49186 * 119.35202 * 0.02562 * 21 19 18 24 24 O 1.21452 * 120.35459 * 180.02562 * 23 21 19 25 25 N 1.34848 * 119.28361 * 359.97438 * 23 21 19 26 26 H 0.96990 * 119.97603 * 180.02562 * 25 23 21 27 27 C 1.39311 * 120.05458 * 359.95485 * 25 23 21 28 28 C 1.38692 * 119.57226 * 180.23712 * 27 25 23 29 29 C 1.46970 * 118.81261 * 55.47613 * 12 11 10 30 30 C 1.46961 * 120.59378 * 25.00138 * 9 7 2 31 31 H 0.96993 * 120.00575 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.61192 * 115.49878 * 10 9 7 33 33 H 1.09005 * 109.74779 * 355.07076 * 10 9 7 34 34 H 1.09004 * 109.60457 * 190.82987 * 11 10 9 35 35 H 1.09000 * 109.75539 * 70.40281 * 11 10 9 36 36 H 1.07996 * 119.95372 * 359.97438 * 16 15 13 37 37 H 1.08000 * 119.87429 * 179.97438 * 17 16 15 38 38 H 1.07999 * 120.03645 * 0.06322 * 28 27 25 39 39 H 1.09005 * 109.60045 * 64.26937 * 29 12 11 40 40 H 1.08994 * 109.60716 * 184.77666 * 29 12 11 41 41 H 1.09004 * 109.60933 * 244.49776 * 30 9 7 42 42 H 1.08992 * 109.61446 * 5.01166 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0571 -1.2214 0.2644 9 7 1.3677 -2.3636 -0.3370 10 6 1.8584 -3.6591 0.1538 11 6 2.1002 -4.5792 -1.0492 12 7 0.9079 -4.5527 -1.9079 13 6 0.2759 -5.6959 -2.2397 14 8 0.6266 -6.7499 -1.7454 15 6 -0.8462 -5.6676 -3.1990 16 6 -0.8162 -4.7874 -4.2857 17 6 -1.8609 -4.7597 -5.1797 18 6 -2.9536 -5.6071 -5.0089 19 7 -3.9999 -5.5666 -5.9212 20 1 -3.9652 -4.9507 -6.6697 21 6 -5.0636 -6.3808 -5.7695 22 8 -5.9795 -6.3476 -6.5662 23 6 -5.1045 -7.3229 -4.6135 24 8 -6.0537 -8.0648 -4.4597 25 7 -4.0757 -7.3426 -3.7420 26 1 -4.0917 -7.9514 -2.9871 27 6 -2.9892 -6.4903 -3.9257 28 6 -1.9343 -6.5223 -3.0260 29 6 0.4204 -3.2577 -2.4032 30 6 0.1753 -2.3370 -1.1957 31 1 -0.4851 0.8399 0.0004 32 1 1.1142 -4.1064 0.8127 33 1 2.7915 -3.5170 0.6991 34 1 2.2780 -5.5968 -0.7014 35 1 2.9648 -4.2289 -1.6129 36 1 0.0281 -4.1281 -4.4225 37 1 -1.8343 -4.0784 -6.0172 38 1 -1.9574 -7.2055 -2.1899 39 1 1.1677 -2.8126 -3.0603 40 1 -0.5113 -3.4024 -2.9500 41 1 -0.6887 -2.6902 -0.6328 42 1 -0.0025 -1.3195 -1.5434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319216158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:10 Heat of formation + Delta-G solvation = -19.253117 kcal Electronic energy + Delta-G solvation = -29700.482814 eV Core-core repulsion = 25454.165107 eV Total energy + Delta-G solvation = -4246.317706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.19548 -40.36921 -39.04836 -38.91075 -36.95081 -36.11916 -35.35788 -34.01837 -31.70062 -30.73487 -30.44100 -29.56577 -27.13510 -26.17447 -24.74966 -23.79513 -23.50823 -22.64043 -21.16749 -19.78113 -19.60695 -18.75129 -18.53214 -18.15747 -17.07770 -16.80481 -16.28198 -16.03600 -15.90390 -15.25466 -14.99298 -14.91102 -14.55913 -14.51080 -14.34060 -14.12453 -13.88804 -13.71980 -13.40627 -13.33786 -12.95541 -12.53224 -12.14751 -11.96806 -11.73702 -11.64145 -11.44571 -11.03935 -10.87423 -10.82894 -10.60910 -10.47647 -10.32077 -10.12987 -9.95900 -9.63755 -9.06132 -8.70716 -8.41862 -8.22763 -6.84862 -5.93169 -3.36806 0.30082 0.52322 1.12360 1.91587 2.33594 2.39094 2.89370 3.14705 3.28917 3.35620 3.35830 3.37711 3.51386 4.02349 4.33404 4.38009 4.60405 4.77197 4.85928 5.12573 5.13091 5.20548 5.26575 5.51815 5.65870 5.66381 5.73851 5.82029 5.90965 5.96803 5.97916 6.06934 6.12260 6.16746 6.23888 6.30813 6.53005 6.67256 6.79679 6.85455 7.10219 7.35332 7.41521 7.60897 7.71763 8.25600 8.30829 9.03237 9.65738 10.20047 11.13592 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.002696 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.282509 B =10384.809752 C =11346.120093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.000 4.000 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.592 5.592 10 C 0.131 3.869 11 C 0.096 3.904 12 N -0.586 5.586 13 C 0.552 3.448 14 O -0.551 6.551 15 C -0.104 4.104 16 C -0.071 4.071 17 C -0.125 4.125 18 C 0.134 3.866 19 N -0.630 5.630 20 H 0.424 0.576 21 C 0.510 3.490 22 O -0.471 6.471 23 C 0.509 3.491 24 O -0.473 6.473 25 N -0.630 5.630 26 H 0.424 0.576 27 C 0.107 3.893 28 C -0.063 4.063 29 C 0.064 3.936 30 C 0.152 3.848 31 H 0.256 0.744 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.023 0.977 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -9.477 -11.063 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.198 4.198 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.315 5.315 10 C 0.004 3.996 11 C -0.028 4.028 12 N -0.317 5.317 13 C 0.340 3.660 14 O -0.430 6.430 15 C -0.109 4.109 16 C -0.090 4.090 17 C -0.146 4.146 18 C 0.035 3.965 19 N -0.279 5.279 20 H 0.264 0.736 21 C 0.291 3.709 22 O -0.340 6.340 23 C 0.291 3.709 24 O -0.342 6.342 25 N -0.279 5.279 26 H 0.265 0.735 27 C 0.008 3.992 28 C -0.084 4.084 29 C -0.060 4.060 30 C 0.026 3.974 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.041 0.959 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.829 -10.318 -11.195 15.699 hybrid contribution 0.489 1.063 0.104 1.175 sum -3.341 -9.255 -11.091 14.827 Atomic orbital electron populations 1.69944 1.05223 1.25818 1.54018 1.25002 0.95369 0.98452 1.00957 0.86305 0.78850 0.83044 0.78191 1.20971 1.21571 1.20874 1.19217 0.92652 0.84524 1.41798 0.91284 1.44040 1.31443 1.01152 1.54854 1.21288 0.98485 0.87092 0.92748 1.22263 0.85922 1.01376 0.93254 1.47995 1.28765 1.06313 1.48612 1.18104 0.82355 0.84018 0.81534 1.90760 1.66881 1.30443 1.54963 1.19757 0.95806 0.98047 0.97265 1.21413 0.98814 0.96358 0.92443 1.20610 0.92400 0.99937 1.01625 1.17491 0.90237 0.98310 0.90503 1.43627 1.17481 1.38861 1.27903 0.73614 1.20167 0.82514 0.81544 0.86652 1.90911 1.34915 1.66092 1.42108 1.20095 0.82933 0.84562 0.83348 1.90916 1.31904 1.38985 1.72429 1.43677 1.17239 1.38283 1.28714 0.73529 1.17154 0.90175 0.95045 0.96804 1.20654 0.90694 0.98782 0.98291 1.23303 0.98935 0.83559 1.00156 1.21430 0.88334 0.99570 0.88090 0.93363 0.95746 0.91420 0.89792 0.91585 0.83218 0.83584 0.83411 0.91408 0.89749 0.95930 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.06 10.89 55.49 0.60 -23.46 16 2 C 0.00 0.01 4.97 -17.43 -0.09 -0.08 16 3 Si 0.91 20.10 29.58 -169.99 -5.03 15.07 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.25 -6.31 9.62 -15.06 -0.14 -6.46 16 8 H 0.07 1.69 7.87 -52.49 -0.41 1.28 16 9 N -0.59 -13.36 2.98 -171.77 -0.51 -13.87 16 10 C 0.13 2.51 6.67 -3.59 -0.02 2.49 16 11 C 0.10 1.56 6.60 -3.60 -0.02 1.54 16 12 N -0.59 -9.18 2.94 -173.39 -0.51 -9.69 16 13 C 0.55 8.30 7.36 -12.42 -0.09 8.20 16 14 O -0.55 -9.76 16.25 5.29 0.09 -9.67 16 15 C -0.10 -1.18 5.28 -104.99 -0.55 -1.74 16 16 C -0.07 -0.62 7.32 -39.23 -0.29 -0.91 16 17 C -0.12 -0.84 9.83 -39.43 -0.39 -1.23 16 18 C 0.13 1.06 6.62 -83.68 -0.55 0.50 16 19 N -0.63 -4.72 5.37 -10.23 -0.05 -4.77 16 20 H 0.42 2.08 8.78 -40.82 -0.36 1.72 16 21 C 0.51 5.51 8.00 -11.69 -0.09 5.42 16 22 O -0.47 -6.55 17.80 -10.84 -0.19 -6.75 16 23 C 0.51 5.70 8.00 -11.68 -0.09 5.60 16 24 O -0.47 -6.80 17.80 -10.85 -0.19 -6.99 16 25 N -0.63 -5.38 5.39 -10.26 -0.06 -5.44 16 26 H 0.42 2.80 8.79 -40.82 -0.36 2.44 16 27 C 0.11 0.94 6.61 -83.71 -0.55 0.39 16 28 C -0.06 -0.61 9.42 -38.97 -0.37 -0.98 16 29 C 0.06 0.98 5.01 -3.36 -0.02 0.96 16 30 C 0.15 3.15 5.56 -3.37 -0.02 3.13 16 31 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 1.24 7.93 -51.93 -0.41 0.82 16 34 H 0.08 1.34 6.99 -51.93 -0.36 0.97 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.15 1.22 6.13 -52.49 -0.32 0.90 16 37 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.15 1.36 8.00 -52.49 -0.42 0.94 16 39 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 40 H 0.08 1.06 4.36 -51.93 -0.23 0.83 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.11 2.57 5.68 -51.93 -0.30 2.28 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -33.01 350.67 -8.29 -41.29 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.42 Total: 2.17 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: -3.30 Total: 16.83 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.53 Total: -57.23 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.30 Total: -23.41 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.01 -8.29 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319216158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.038 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds