Wall clock time and date at job start Wed Apr 1 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47485 * 240.00356 * 3 2 1 5 5 H 1.48507 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47021 * 120.00147 * 3 2 1 7 7 C 1.38813 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00140 * 196.45618 * 7 2 1 9 9 N 1.36935 * 120.00021 * 16.45706 * 7 2 1 10 10 C 1.46971 * 120.59380 * 204.98664 * 9 7 2 11 11 C 1.53370 * 108.63111 * 235.24585 * 10 9 7 12 12 N 1.46961 * 108.63735 * 310.57310 * 11 10 9 13 13 C 1.34779 * 120.59673 * 235.20978 * 12 11 10 14 14 O 1.21584 * 119.99517 * 5.74638 * 13 12 11 15 15 C 1.47651 * 120.00234 * 185.47789 * 13 12 11 16 16 C 1.39875 * 120.03586 * 36.48070 * 15 13 12 17 17 C 1.37522 * 120.09391 * 180.02562 * 16 15 13 18 18 C 1.39334 * 120.25349 * 359.97438 * 17 16 15 19 19 N 1.38868 * 119.51157 * 180.02562 * 18 17 16 20 20 H 0.97001 * 119.90291 * 359.97438 * 19 18 17 21 21 C 1.34813 * 120.19663 * 179.97438 * 19 18 17 22 22 O 1.21439 * 120.32000 * 180.02562 * 21 19 18 23 23 C 1.49186 * 119.35202 * 0.02562 * 21 19 18 24 24 O 1.21452 * 120.35459 * 180.02562 * 23 21 19 25 25 N 1.34848 * 119.28361 * 359.97438 * 23 21 19 26 26 H 0.96990 * 119.97603 * 180.02562 * 25 23 21 27 27 C 1.39311 * 120.05458 * 359.95485 * 25 23 21 28 28 C 1.38692 * 119.57226 * 180.23712 * 27 25 23 29 29 C 1.46970 * 118.81261 * 55.47613 * 12 11 10 30 30 C 1.46961 * 120.59378 * 25.00138 * 9 7 2 31 31 H 0.96993 * 120.00575 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.61192 * 115.49878 * 10 9 7 33 33 H 1.09005 * 109.74779 * 355.07076 * 10 9 7 34 34 H 1.09004 * 109.60457 * 190.82987 * 11 10 9 35 35 H 1.09000 * 109.75539 * 70.40281 * 11 10 9 36 36 H 1.07996 * 119.95372 * 359.97438 * 16 15 13 37 37 H 1.08000 * 119.87429 * 179.97438 * 17 16 15 38 38 H 1.07999 * 120.03645 * 0.06322 * 28 27 25 39 39 H 1.09005 * 109.60045 * 64.26937 * 29 12 11 40 40 H 1.08994 * 109.60716 * 184.77666 * 29 12 11 41 41 H 1.09004 * 109.60933 * 244.49776 * 30 9 7 42 42 H 1.08992 * 109.61446 * 5.01166 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0571 -1.2214 0.2644 9 7 1.3677 -2.3636 -0.3370 10 6 1.8584 -3.6591 0.1538 11 6 2.1002 -4.5792 -1.0492 12 7 0.9079 -4.5527 -1.9079 13 6 0.2759 -5.6959 -2.2397 14 8 0.6266 -6.7499 -1.7454 15 6 -0.8462 -5.6676 -3.1990 16 6 -0.8162 -4.7874 -4.2857 17 6 -1.8609 -4.7597 -5.1797 18 6 -2.9536 -5.6071 -5.0089 19 7 -3.9999 -5.5666 -5.9212 20 1 -3.9652 -4.9507 -6.6697 21 6 -5.0636 -6.3808 -5.7695 22 8 -5.9795 -6.3476 -6.5662 23 6 -5.1045 -7.3229 -4.6135 24 8 -6.0537 -8.0648 -4.4597 25 7 -4.0757 -7.3426 -3.7420 26 1 -4.0917 -7.9514 -2.9871 27 6 -2.9892 -6.4903 -3.9257 28 6 -1.9343 -6.5223 -3.0260 29 6 0.4204 -3.2577 -2.4032 30 6 0.1753 -2.3370 -1.1957 31 1 -0.4851 0.8399 0.0004 32 1 1.1142 -4.1064 0.8127 33 1 2.7915 -3.5170 0.6991 34 1 2.2780 -5.5968 -0.7014 35 1 2.9648 -4.2289 -1.6129 36 1 0.0281 -4.1281 -4.4225 37 1 -1.8343 -4.0784 -6.0172 38 1 -1.9574 -7.2055 -2.1899 39 1 1.1677 -2.8126 -3.0603 40 1 -0.5113 -3.4024 -2.9500 41 1 -0.6887 -2.6902 -0.6328 42 1 -0.0025 -1.3195 -1.5434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319216158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:09 Heat of formation + Delta-G solvation = -42.838506 kcal Electronic energy + Delta-G solvation = -29701.505553 eV Core-core repulsion = 25454.165107 eV Total energy + Delta-G solvation = -4247.340445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.132 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.00502 -41.44432 -40.03395 -39.79501 -38.40799 -36.99238 -36.16754 -35.57689 -33.28816 -31.91965 -31.48935 -30.57672 -28.66840 -27.00299 -26.00469 -24.86144 -24.77555 -23.81249 -22.43782 -20.92254 -20.44588 -19.89103 -19.38482 -19.00638 -18.45581 -17.65443 -17.50684 -17.25292 -16.85351 -16.62328 -16.37014 -15.97063 -15.58061 -15.43983 -15.40483 -15.23002 -15.08187 -14.95817 -14.78448 -14.68267 -14.00208 -13.82900 -13.29839 -13.12937 -13.04973 -12.64715 -12.59754 -12.45561 -12.42187 -12.18869 -12.08004 -11.94910 -11.66328 -11.62052 -11.37434 -10.89616 -10.53883 -9.87678 -9.70523 -9.03704 -8.63248 -7.82776 -5.29479 -0.52148 -0.26001 0.36828 1.12650 1.43988 1.53816 1.55116 1.61592 1.63263 1.86851 2.07013 2.54676 2.58855 2.66675 3.29029 3.31036 3.42721 3.65679 3.87556 4.02280 4.12635 4.29323 4.30028 4.39797 4.44748 4.53985 4.64879 4.69548 4.81395 4.85323 4.87513 4.97155 5.11637 5.19390 5.27593 5.32154 5.37155 5.46827 5.60188 5.65291 5.74633 5.78346 6.13359 6.39732 6.48159 6.57742 7.10997 7.16093 7.84436 8.34920 9.20697 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.002696 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.282509 B =10384.809752 C =11346.120093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.048 4.048 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.071 0.929 9 N -0.610 5.610 10 C 0.130 3.870 11 C 0.106 3.894 12 N -0.592 5.592 13 C 0.554 3.446 14 O -0.582 6.582 15 C -0.124 4.124 16 C -0.069 4.069 17 C -0.101 4.101 18 C 0.138 3.862 19 N -0.606 5.606 20 H 0.440 0.560 21 C 0.512 3.488 22 O -0.507 6.507 23 C 0.508 3.492 24 O -0.514 6.514 25 N -0.614 5.614 26 H 0.433 0.567 27 C 0.103 3.897 28 C -0.062 4.062 29 C 0.083 3.917 30 C 0.155 3.845 31 H 0.251 0.749 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.163 0.837 37 H 0.189 0.811 38 H 0.148 0.852 39 H 0.082 0.918 40 H 0.117 0.883 41 H -0.007 1.007 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 -8.923 -13.134 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.088 0.912 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.018 4.018 12 N -0.323 5.323 13 C 0.344 3.656 14 O -0.464 6.464 15 C -0.128 4.128 16 C -0.089 4.089 17 C -0.121 4.121 18 C 0.038 3.962 19 N -0.255 5.255 20 H 0.284 0.716 21 C 0.294 3.706 22 O -0.379 6.379 23 C 0.290 3.710 24 O -0.386 6.386 25 N -0.263 5.263 26 H 0.275 0.725 27 C 0.004 3.996 28 C -0.083 4.083 29 C -0.040 4.040 30 C 0.029 3.971 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.181 0.819 37 H 0.206 0.794 38 H 0.166 0.834 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.011 0.989 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.770 -9.762 -13.273 16.707 hybrid contribution 0.235 0.852 0.826 1.210 sum -2.535 -8.910 -12.446 15.515 Atomic orbital electron populations 1.70107 1.06414 1.25942 1.55514 1.25663 0.96030 1.01124 1.01458 0.85352 0.77491 0.79367 0.78231 1.19994 1.22291 1.20934 1.19522 0.92921 0.85578 1.40950 0.91171 1.44316 1.31741 1.01590 1.55663 1.21360 0.97977 0.86315 0.93976 1.22050 0.86829 1.00603 0.92312 1.48029 1.28740 1.06755 1.48762 1.18599 0.82530 0.83100 0.81411 1.90741 1.67844 1.31442 1.56354 1.19565 0.95199 1.00207 0.97873 1.21555 0.99761 0.95801 0.91791 1.20966 0.90387 0.99062 1.01694 1.17670 0.90508 0.98084 0.89979 1.43430 1.16186 1.37922 1.27948 0.71641 1.20057 0.82759 0.81696 0.86092 1.90900 1.36376 1.67333 1.43323 1.20202 0.82799 0.84301 0.83670 1.90897 1.33451 1.40756 1.73502 1.43581 1.16478 1.37882 1.28311 0.72506 1.17164 0.89810 0.95406 0.97177 1.20602 0.90630 0.98532 0.98550 1.23113 1.01051 0.82181 0.97664 1.21293 0.86871 0.99484 0.89470 0.93959 0.97511 0.90947 0.89436 0.90347 0.81942 0.79398 0.83427 0.89943 0.86535 0.98876 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.32 10.89 21.65 0.24 -50.08 16 2 C -0.05 -2.42 4.97 84.86 0.42 -2.00 16 3 Si 0.97 41.20 29.58 68.60 2.03 43.23 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.30 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.26 -12.96 9.62 84.03 0.81 -12.16 16 8 H 0.07 3.41 7.87 -2.91 -0.02 3.38 16 9 N -0.61 -27.55 2.98 -697.34 -2.08 -29.63 16 10 C 0.13 4.99 6.67 86.41 0.58 5.57 16 11 C 0.11 3.34 6.60 86.42 0.57 3.91 16 12 N -0.59 -17.62 2.94 -820.75 -2.41 -20.03 16 13 C 0.55 15.79 7.36 86.73 0.64 16.42 16 14 O -0.58 -20.18 16.25 -3.98 -0.06 -20.24 16 15 C -0.12 -2.51 5.28 -20.10 -0.11 -2.62 16 16 C -0.07 -0.94 7.32 22.50 0.16 -0.77 16 17 C -0.10 -0.85 9.83 22.36 0.22 -0.63 16 18 C 0.14 1.65 6.62 38.67 0.26 1.91 16 19 N -0.61 -7.09 5.37 -304.57 -1.64 -8.72 16 20 H 0.44 2.55 8.78 -92.71 -0.81 1.73 16 21 C 0.51 10.30 8.00 87.18 0.70 10.99 16 22 O -0.51 -13.75 17.80 12.02 0.21 -13.54 16 23 C 0.51 10.98 8.00 87.18 0.70 11.68 16 24 O -0.51 -14.91 17.80 11.98 0.21 -14.70 16 25 N -0.61 -9.66 5.39 -304.67 -1.64 -11.31 16 26 H 0.43 5.33 8.79 -92.72 -0.81 4.51 16 27 C 0.10 1.56 6.61 38.44 0.25 1.81 16 28 C -0.06 -1.09 9.42 22.67 0.21 -0.88 16 29 C 0.08 2.35 5.01 86.56 0.43 2.79 16 30 C 0.16 6.41 5.56 86.57 0.48 6.89 16 31 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 32 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16 33 H 0.07 2.64 7.93 -2.38 -0.02 2.62 16 34 H 0.09 2.71 6.99 -2.38 -0.02 2.70 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.16 1.87 6.13 -2.91 -0.02 1.85 16 37 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 38 H 0.15 2.58 8.00 -2.91 -0.02 2.55 16 39 H 0.08 2.16 8.11 -2.38 -0.02 2.14 16 40 H 0.12 2.55 4.36 -2.39 -0.01 2.54 16 41 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.09 4.06 5.68 -2.39 -0.01 4.04 16 Total: -1.00 -73.85 350.67 0.68 -73.16 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -0.50 Total: 8.94 kcal Atomic # 6 Polarization: 36.59 SS G_CDS: 6.33 Total: 42.92 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -7.54 Total: -119.77 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: 0.36 Total: -48.48 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -73.85 0.68 -73.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319216158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.326 kcal (2) G-P(sol) polarization free energy of solvation -73.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds