Wall clock time and date at job start Wed Apr 1 2020 03:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42098 * 108.57913 * 2 1 4 4 O 1.42098 * 108.58075 * 228.97043 * 2 1 3 5 5 C 1.81399 * 101.92292 * 114.48501 * 2 1 3 6 6 H 1.09002 * 110.88425 * 303.88182 * 5 2 1 7 7 C 1.55160 * 111.00561 * 179.97438 * 5 2 1 8 8 C 1.54320 * 102.93964 * 206.38502 * 7 5 2 9 9 N 1.47024 * 107.27463 * 22.19532 * 8 7 5 10 10 C 1.34777 * 125.64604 * 181.02386 * 9 8 7 11 11 O 1.21344 * 119.99523 * 180.02562 * 10 9 8 12 12 C 1.49447 * 120.00385 * 0.02562 * 10 9 8 13 13 O 1.21348 * 119.99760 * 5.22318 * 12 10 9 14 14 N 1.34779 * 120.00308 * 185.21693 * 12 10 9 15 15 C 1.46499 * 120.00298 * 185.00142 * 14 12 10 16 16 C 1.52990 * 109.47250 * 184.77290 * 15 14 12 17 17 C 1.50706 * 115.55161 * 294.82176 * 16 15 14 18 18 H 1.08000 * 119.99895 * 99.47409 * 17 16 15 19 19 C 1.37874 * 120.00086 * 279.20355 * 17 16 15 20 20 N 1.31520 * 119.99911 * 355.32425 * 19 17 16 21 21 Si 1.86793 * 119.99951 * 175.32600 * 19 17 16 22 22 H 1.48496 * 109.47523 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47294 * 120.00026 * 21 19 17 24 24 H 1.48504 * 109.47258 * 239.99754 * 21 19 17 25 25 C 1.53004 * 117.51770 * 80.52279 * 16 15 14 26 26 C 1.52997 * 117.49997 * 149.15256 * 16 15 14 27 27 C 1.47422 * 108.70060 * 1.28356 * 9 8 7 28 28 H 1.09000 * 109.47147 * 305.51239 * 1 2 3 29 29 H 1.09002 * 109.47141 * 65.51850 * 1 2 3 30 30 H 1.09008 * 109.47191 * 185.51243 * 1 2 3 31 31 H 1.08999 * 110.71823 * 88.02503 * 7 5 2 32 32 H 1.08996 * 110.87018 * 324.81753 * 7 5 2 33 33 H 1.09005 * 109.88287 * 262.77254 * 8 7 5 34 34 H 1.09009 * 110.01060 * 141.68522 * 8 7 5 35 35 H 0.97006 * 119.99578 * 4.99638 * 14 12 10 36 36 H 1.09002 * 109.46695 * 64.76910 * 15 14 12 37 37 H 1.09003 * 109.46667 * 304.77667 * 15 14 12 38 38 H 0.96995 * 119.99483 * 185.00718 * 20 19 17 39 39 H 1.09000 * 117.49944 * 214.97129 * 25 16 15 40 40 H 1.08992 * 117.49831 * 359.97438 * 25 16 15 41 41 H 1.08994 * 117.50103 * 359.97438 * 26 16 15 42 42 H 1.08998 * 117.49986 * 144.97809 * 26 16 15 43 43 H 1.08994 * 110.36593 * 94.48545 * 27 9 8 44 44 H 1.08999 * 110.36481 * 216.80405 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6152 6 1 1.7135 -0.1723 2.4184 7 6 3.7209 -0.8377 1.8379 8 6 3.8491 -2.0200 2.8214 9 7 2.6302 -2.8314 2.6899 10 6 2.3480 -3.9449 3.3950 11 8 1.3068 -4.5375 3.2021 12 6 3.3173 -4.4497 4.4143 13 8 4.3131 -3.8071 4.6750 14 7 3.0855 -5.6186 5.0439 15 6 3.9763 -6.0603 6.1199 16 6 3.5650 -7.4602 6.5801 17 6 2.2070 -7.5593 7.2260 18 1 1.3601 -7.9054 6.6522 19 6 2.0469 -7.2133 8.5510 20 7 3.0939 -6.8852 9.2761 21 14 0.3429 -7.2107 9.3163 22 1 -0.6584 -7.6139 8.2965 23 1 0.3082 -8.1686 10.4506 24 1 0.0241 -5.8470 9.8102 25 6 4.0349 -8.6478 5.7376 26 6 4.6663 -8.3830 7.1059 27 6 1.7706 -2.2290 1.6548 28 1 -0.3633 0.5969 0.8365 29 1 -0.3633 0.4259 -0.9353 30 1 -0.3634 -1.0230 0.0987 31 1 4.1076 0.0786 2.2838 32 1 4.2354 -1.0568 0.9023 33 1 3.9372 -1.6458 3.8414 34 1 4.7233 -2.6208 2.5704 35 1 2.3288 -6.1674 4.7847 36 1 3.9054 -5.3668 6.9579 37 1 5.0029 -6.0849 5.7545 38 1 2.9917 -6.7125 10.2251 39 1 3.3618 -9.5007 5.6505 40 1 4.6368 -8.4318 4.8550 41 1 5.6839 -7.9929 7.1235 42 1 4.4087 -9.0615 7.9191 43 1 1.9514 -2.7016 0.6894 44 1 0.7207 -2.3214 1.9326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330224256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:18 Heat of formation + Delta-G solvation = -126.977633 kcal Electronic energy + Delta-G solvation = -28152.350036 eV Core-core repulsion = 24004.512244 eV Total energy + Delta-G solvation = -4147.837792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.85805 -40.01632 -38.71325 -38.47693 -38.03827 -37.10019 -35.13287 -34.00008 -33.05561 -30.96027 -29.77688 -28.80267 -27.48510 -26.09935 -23.40949 -22.95955 -22.79320 -21.42419 -20.73225 -19.81496 -19.09764 -18.50029 -18.01892 -17.91839 -17.15662 -16.96206 -16.80694 -16.65629 -16.51330 -16.04829 -15.62756 -15.49503 -14.96296 -14.78916 -14.55679 -14.25663 -14.12147 -13.89599 -13.86951 -13.66290 -13.51657 -13.31225 -13.18144 -13.07868 -12.95542 -12.87217 -12.85013 -12.57215 -12.35740 -12.19680 -12.03499 -11.94478 -11.44740 -11.41663 -10.97234 -10.73928 -10.48562 -10.16821 -10.02277 -9.90463 -8.12230 -6.25424 -1.02101 0.31533 1.18664 1.39112 1.43846 1.53082 1.77640 2.09376 2.38915 2.42245 2.58619 2.83734 3.14291 3.17866 3.36246 3.40983 3.56809 3.80661 4.09174 4.11856 4.13832 4.18485 4.28791 4.38093 4.50041 4.56468 4.61897 4.66034 4.68088 4.78724 4.91751 4.93748 5.00553 5.00626 5.04452 5.26625 5.34842 5.51042 5.65319 5.76867 5.92323 6.25765 6.34898 6.65165 6.81644 6.96388 7.44397 8.94903 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.002393 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.841115 B =11699.381230 C =12289.638520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.445 3.555 3 O -0.970 6.970 4 O -0.971 6.971 5 C -0.591 4.591 6 H 0.180 0.820 7 C -0.112 4.112 8 C 0.108 3.892 9 N -0.587 5.587 10 C 0.525 3.475 11 O -0.538 6.538 12 C 0.496 3.504 13 O -0.547 6.547 14 N -0.670 5.670 15 C 0.177 3.823 16 C -0.001 4.001 17 C -0.507 4.507 18 H 0.058 0.942 19 C 0.028 3.972 20 N -0.903 5.903 21 Si 0.946 3.054 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.286 1.286 25 C -0.180 4.180 26 C -0.150 4.150 27 C 0.111 3.889 28 H 0.156 0.844 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.414 0.586 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.260 0.740 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 14.784 -17.544 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.630 3.370 3 O -0.967 6.967 4 O -0.969 6.969 5 C -0.699 4.699 6 H 0.198 0.802 7 C -0.150 4.150 8 C -0.015 4.015 9 N -0.321 5.321 10 C 0.308 3.692 11 O -0.416 6.416 12 C 0.277 3.723 13 O -0.426 6.426 14 N -0.320 5.320 15 C 0.054 3.946 16 C -0.002 4.002 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.173 4.173 20 N -0.541 5.541 21 Si 0.772 3.228 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.212 1.212 25 C -0.218 4.218 26 C -0.188 4.188 27 C -0.011 4.011 28 H 0.175 0.825 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.143 0.857 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.251 0.749 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.255 15.267 -17.870 23.727 hybrid contribution -1.383 -0.716 1.577 2.216 sum -4.639 14.551 -16.293 22.332 Atomic orbital electron populations 1.30150 1.21242 1.14043 1.13939 1.07044 0.80143 0.74016 0.75815 1.93573 1.81224 1.35442 1.86428 1.93569 1.81159 1.67630 1.54502 1.31765 1.06116 1.06165 1.25808 0.80192 1.22640 0.91066 1.00087 1.01244 1.22268 0.86333 0.91808 1.01099 1.48205 1.22216 1.24613 1.37109 1.19751 0.86518 0.81032 0.81878 1.90755 1.26272 1.57389 1.67145 1.20171 0.86414 0.82546 0.83199 1.90689 1.28579 1.57352 1.65952 1.45796 1.31282 1.20124 1.34750 1.20789 0.90780 0.96249 0.86777 1.19069 0.94913 0.86802 0.99388 1.20694 0.93303 1.44595 0.95910 0.92385 1.25632 0.99461 0.94267 0.97906 1.70087 1.30474 1.46839 1.06676 0.85694 0.81231 0.77354 0.78519 1.19052 1.20744 1.21219 1.22993 1.03882 1.01147 0.93731 1.22430 0.96475 1.04111 0.95807 1.22447 0.97319 0.88631 0.92722 0.82537 0.83801 0.83168 0.85675 0.88666 0.90073 0.90399 0.74914 0.93997 0.92758 0.93062 0.89856 0.89219 0.90613 0.91630 0.88177 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.31 10.50 113.37 1.19 -0.12 16 2 S 2.45 24.42 4.98 -56.49 -0.28 24.14 16 3 O -0.97 -16.69 18.10 -127.37 -2.30 -18.99 16 4 O -0.97 -17.49 17.39 -127.37 -2.22 -19.70 16 5 C -0.59 -5.63 3.45 32.06 0.11 -5.52 16 6 H 0.18 0.68 8.14 -2.39 -0.02 0.66 16 7 C -0.11 -1.42 6.43 31.78 0.20 -1.22 16 8 C 0.11 2.18 5.50 86.73 0.48 2.66 16 9 N -0.59 -13.88 3.32 -812.93 -2.70 -16.59 16 10 C 0.53 16.58 7.91 87.27 0.69 17.27 16 11 O -0.54 -18.78 16.75 -3.23 -0.05 -18.83 16 12 C 0.50 18.09 7.84 87.27 0.68 18.78 16 13 O -0.55 -21.01 14.13 -3.24 -0.05 -21.06 16 14 N -0.67 -26.31 5.46 -464.42 -2.54 -28.84 16 15 C 0.18 7.78 5.53 86.38 0.48 8.26 16 16 C 0.00 -0.04 1.40 -52.93 -0.07 -0.12 16 17 C -0.51 -25.99 8.57 25.60 0.22 -25.77 16 18 H 0.06 2.96 7.82 -2.91 -0.02 2.93 16 19 C 0.03 1.50 5.44 84.65 0.46 1.96 16 20 N -0.90 -49.78 12.85 21.45 0.28 -49.51 16 21 Si 0.95 42.19 29.54 68.60 2.03 44.22 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 25 C -0.18 -7.13 9.96 30.60 0.30 -6.82 16 26 C -0.15 -6.63 9.39 30.59 0.29 -6.34 16 27 C 0.11 1.67 6.26 86.93 0.54 2.21 16 28 H 0.16 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.13 8.04 -2.39 -0.02 1.11 16 33 H 0.08 1.80 7.47 -2.38 -0.02 1.79 16 34 H 0.08 1.71 7.80 -2.38 -0.02 1.69 16 35 H 0.41 16.12 7.84 -92.70 -0.73 15.40 16 36 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.05 2.27 8.06 -2.39 -0.02 2.25 16 38 H 0.26 13.79 8.32 -92.71 -0.77 13.02 16 39 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.08 3.13 8.14 -2.39 -0.02 3.12 16 42 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.10 1.42 7.45 -2.39 -0.02 1.41 16 44 H 0.11 1.35 8.03 -2.39 -0.02 1.33 16 Total: -1.00 -75.63 384.27 -1.97 -77.60 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.29 Total: 22.34 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 5.58 Total: 5.23 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -4.96 Total: -94.94 kcal Atomic # 8 Polarization: -73.96 SS G_CDS: -4.62 Total: -78.58 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 24.42 SS G_CDS: -0.28 Total: 24.14 kcal Total: -75.63 -1.97 -77.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330224256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.381 kcal (2) G-P(sol) polarization free energy of solvation -75.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds