Wall clock time and date at job start Wed Apr 1 2020 03:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34774 * 117.00161 * 2 1 4 4 O 1.21532 * 119.99637 * 0.02562 * 3 2 1 5 5 C 1.47275 * 120.00088 * 179.97438 * 3 2 1 6 6 N 1.36101 * 126.45833 * 0.02826 * 5 3 2 7 7 C 1.29922 * 108.47393 * 179.97438 * 6 5 3 8 8 O 1.34056 * 109.25822 * 0.02562 * 7 6 5 9 9 C 1.34228 * 108.24590 * 359.97438 * 8 7 6 10 10 C 1.50703 * 126.53202 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47479 * 269.98176 * 10 9 8 12 12 C 1.50699 * 109.47166 * 179.97438 * 11 10 9 13 13 O 1.21273 * 119.99936 * 0.02562 * 12 11 10 14 14 N 1.34772 * 119.99831 * 179.97438 * 12 11 10 15 15 C 1.37139 * 120.00550 * 354.95800 * 14 12 11 16 16 H 1.08006 * 119.99626 * 344.73775 * 15 14 12 17 17 C 1.38887 * 120.00477 * 164.73560 * 15 14 12 18 18 N 1.31422 * 119.99992 * 343.62333 * 17 15 14 19 19 Si 1.86793 * 120.00186 * 163.62633 * 17 15 14 20 20 H 1.48504 * 109.47457 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47570 * 119.99832 * 19 17 15 22 22 H 1.48506 * 109.47228 * 239.99909 * 19 17 15 23 23 C 1.39789 * 119.99977 * 174.95556 * 14 12 11 24 24 C 1.38957 * 120.07791 * 101.20897 * 23 14 12 25 25 C 1.38089 * 119.91767 * 179.79270 * 24 23 14 26 26 C 1.38303 * 120.07990 * 0.46557 * 25 24 23 27 27 C 1.38301 * 120.15979 * 359.78481 * 26 25 24 28 28 C 1.38088 * 120.07539 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47331 * 299.99967 * 1 2 3 30 30 H 1.08998 * 109.47276 * 60.00332 * 1 2 3 31 31 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 32 32 H 1.07998 * 125.37204 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46874 * 29.97989 * 10 9 8 34 34 H 1.08996 * 109.46868 * 149.97712 * 10 9 8 35 35 H 1.08998 * 109.47211 * 300.00191 * 11 10 9 36 36 H 1.08997 * 109.46927 * 59.99934 * 11 10 9 37 37 H 0.96997 * 120.00620 * 185.01737 * 18 17 15 38 38 H 1.07996 * 120.04102 * 0.02562 * 24 23 14 39 39 H 1.08006 * 119.95411 * 180.25099 * 25 24 23 40 40 H 1.08009 * 119.91894 * 179.76911 * 26 25 24 41 41 H 1.07997 * 119.96732 * 179.97438 * 27 26 25 42 42 H 1.07998 * 120.03752 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4019 2.2201 0.0005 5 6 3.5346 1.2779 0.0006 6 7 4.3995 0.2271 0.0006 7 6 5.6126 0.6923 0.0006 8 8 5.5722 2.0323 0.0012 9 6 4.2854 2.4140 0.0010 10 6 3.7697 3.8300 0.0009 11 6 3.5944 4.3091 1.4433 12 6 3.0793 5.7253 1.4431 13 8 2.8723 6.2951 0.3928 14 7 2.8477 6.3582 2.6102 15 6 2.9814 5.6817 3.7956 16 1 3.0269 4.6026 3.7992 17 6 3.0582 6.3840 4.9913 18 7 3.3259 7.6706 4.9816 19 14 2.7811 5.4999 6.6133 20 1 2.4977 4.0655 6.3532 21 1 3.9976 5.6196 7.4565 22 1 1.6270 6.1118 7.3197 23 6 2.4713 7.7045 2.6125 24 6 1.1389 8.0548 2.7941 25 6 0.7714 9.3859 2.8001 26 6 1.7262 10.3694 2.6161 27 6 3.0524 10.0243 2.4300 28 6 3.4279 8.6954 2.4277 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 6.5117 0.0940 0.0003 33 1 4.4819 4.4760 -0.5125 34 1 2.8094 3.8669 -0.5135 35 1 2.8823 3.6631 1.9567 36 1 4.5547 4.2722 1.9575 37 1 3.4515 8.1463 5.8176 38 1 0.3923 7.2871 2.9340 39 1 -0.2634 9.6590 2.9452 40 1 1.4352 11.4096 2.6176 41 1 3.7953 10.7949 2.2862 42 1 4.4637 8.4266 2.2819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352008337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:15 Heat of formation + Delta-G solvation = -53.530196 kcal Electronic energy + Delta-G solvation = -29814.827305 eV Core-core repulsion = 25534.730482 eV Total energy + Delta-G solvation = -4280.096823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.57656 -40.18423 -39.40675 -37.40515 -36.51231 -34.97476 -34.84902 -33.63798 -31.70584 -29.98283 -29.87434 -28.77164 -27.82100 -25.26944 -24.83327 -23.91081 -22.19326 -21.52598 -21.27888 -20.54489 -19.19905 -18.39598 -17.72007 -17.12385 -16.94475 -16.46136 -16.12828 -15.83878 -15.52921 -15.18464 -14.80460 -14.60524 -14.28085 -13.96822 -13.69777 -13.51785 -13.35076 -13.20097 -12.49330 -12.46214 -12.30967 -12.16756 -12.01608 -11.56441 -11.51233 -11.45823 -11.20335 -10.97613 -10.91894 -10.86032 -10.81452 -10.53514 -10.41182 -10.31073 -10.26722 -9.45402 -9.11570 -8.62718 -8.15278 -7.85943 -7.56625 -6.28344 -4.05638 0.90009 1.81582 2.31842 2.47337 2.52246 2.70052 3.00730 3.04293 3.16570 3.18894 3.70705 3.92043 3.98696 4.38357 4.69016 4.79204 4.85455 5.04272 5.04518 5.13692 5.17808 5.29501 5.43583 5.47123 5.68714 5.80291 5.89161 5.90518 5.94557 6.01656 6.17867 6.23509 6.35252 6.43767 6.48271 6.57034 6.82734 7.05597 7.28386 7.29522 7.34837 7.46252 7.61153 7.74811 7.76456 7.97276 8.39553 8.95234 9.31600 9.74718 10.56674 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011351 B = 0.003371 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.145368 B = 8303.563963 C = 8698.186598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.342 6.342 3 C 0.551 3.449 4 O -0.485 6.485 5 C -0.073 4.073 6 N -0.449 5.449 7 C 0.170 3.830 8 O -0.192 6.192 9 C 0.082 3.918 10 C -0.034 4.034 11 C -0.109 4.109 12 C 0.469 3.531 13 O -0.595 6.595 14 N -0.412 5.412 15 C -0.353 4.353 16 H 0.102 0.898 17 C 0.045 3.955 18 N -0.846 5.846 19 Si 0.919 3.081 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.278 1.278 23 C 0.240 3.760 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.146 4.146 27 C -0.122 4.122 28 C -0.067 4.067 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.257 0.743 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.272 0.728 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 -9.738 -5.933 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.258 6.258 3 C 0.394 3.606 4 O -0.371 6.371 5 C -0.190 4.190 6 N -0.177 5.177 7 C -0.059 4.059 8 O -0.078 6.078 9 C 0.025 3.975 10 C -0.072 4.072 11 C -0.149 4.149 12 C 0.259 3.741 13 O -0.480 6.480 14 N -0.129 5.129 15 C -0.479 4.479 16 H 0.120 0.880 17 C -0.162 4.162 18 N -0.481 5.481 19 Si 0.745 3.255 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.204 1.204 23 C 0.149 3.851 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.164 4.164 27 C -0.141 4.141 28 C -0.086 4.086 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.272 0.728 33 H 0.115 0.885 34 H 0.140 0.860 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.738 -9.632 -6.272 11.518 hybrid contribution 0.125 0.037 1.341 1.347 sum 0.863 -9.596 -4.931 10.823 Atomic orbital electron populations 1.23330 0.75880 1.03725 1.02917 1.86628 1.23339 1.31757 1.84085 1.19373 0.86144 0.81918 0.73161 1.90960 1.65297 1.35553 1.45315 1.20179 0.92393 0.89352 1.17074 1.70798 0.99940 1.31199 1.15781 1.28063 0.98387 0.78148 1.01337 1.84454 1.28233 1.26212 1.68861 1.24135 0.79941 0.98228 0.95162 1.20369 1.03343 0.83811 0.99668 1.21270 1.03216 0.95888 0.94513 1.19840 0.82615 0.88298 0.83308 1.90582 1.57565 1.68770 1.31091 1.41315 1.58261 1.07524 1.05752 1.19633 1.53899 0.92149 0.82178 0.87985 1.25260 0.95694 0.95598 0.99695 1.69940 1.42290 1.07961 1.27914 0.86000 0.78284 0.79591 0.81645 1.19250 1.20605 1.20401 1.17085 0.91351 0.83787 0.92832 1.20992 0.95554 0.95700 1.01989 1.20662 0.98248 0.92799 1.02452 1.20730 0.93577 0.97882 1.04221 1.20675 0.95599 0.95440 1.02359 1.20789 0.98029 0.92091 0.97731 0.91518 0.91696 0.87994 0.72775 0.88537 0.85970 0.89436 0.89233 0.91704 0.87536 0.87642 0.87793 0.87608 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.57 101.05 1.07 1.43 16 2 O -0.34 -4.85 10.58 -40.69 -0.43 -5.28 16 3 C 0.55 8.83 7.96 34.40 0.27 9.11 16 4 O -0.48 -8.68 14.60 -19.29 -0.28 -8.96 16 5 C -0.07 -1.12 7.04 -83.04 -0.58 -1.71 16 6 N -0.45 -6.19 11.36 -11.50 -0.13 -6.32 16 7 C 0.17 1.74 13.19 51.95 0.69 2.43 16 8 O -0.19 -2.43 10.72 6.57 0.07 -2.36 16 9 C 0.08 1.23 6.70 -35.05 -0.23 1.00 16 10 C -0.03 -0.57 4.50 -27.88 -0.13 -0.70 16 11 C -0.11 -2.07 4.23 -27.89 -0.12 -2.19 16 12 C 0.47 11.05 7.58 -10.99 -0.08 10.97 16 13 O -0.59 -15.22 15.96 5.56 0.09 -15.13 16 14 N -0.41 -10.28 2.66 -58.98 -0.16 -10.44 16 15 C -0.35 -8.71 9.19 -14.94 -0.14 -8.84 16 16 H 0.10 2.38 6.46 -52.48 -0.34 2.04 16 17 C 0.05 1.12 5.24 -17.49 -0.09 1.02 16 18 N -0.85 -21.60 10.34 55.49 0.57 -21.02 16 19 Si 0.92 19.29 29.59 -169.99 -5.03 14.26 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 C 0.24 5.96 2.29 -83.69 -0.19 5.76 16 24 C -0.12 -2.88 9.95 -39.37 -0.39 -3.27 16 25 C -0.12 -2.52 10.04 -39.61 -0.40 -2.92 16 26 C -0.15 -2.85 10.04 -39.53 -0.40 -3.24 16 27 C -0.12 -2.51 10.04 -39.61 -0.40 -2.91 16 28 C -0.07 -1.58 8.66 -39.37 -0.34 -1.92 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.10 1.54 8.10 -51.93 -0.42 1.12 16 34 H 0.12 2.21 6.44 -51.93 -0.33 1.87 16 35 H 0.09 1.68 7.52 -51.93 -0.39 1.29 16 36 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 37 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 38 H 0.11 2.46 8.06 -52.49 -0.42 2.04 16 39 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 40 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 41 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.10 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -32.21 372.07 -6.00 -38.21 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.85 Total: 7.43 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -1.46 Total: 4.01 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.29 Total: -37.78 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.55 Total: -31.73 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.21 -6.00 -38.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352008337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.321 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds