Wall clock time and date at job start Wed Apr 1 2020 03:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34774 * 117.00161 * 2 1 4 4 O 1.21532 * 119.99637 * 0.02562 * 3 2 1 5 5 C 1.47275 * 120.00088 * 179.97438 * 3 2 1 6 6 N 1.36101 * 126.45833 * 0.02826 * 5 3 2 7 7 C 1.29922 * 108.47393 * 179.97438 * 6 5 3 8 8 O 1.34056 * 109.25822 * 0.02562 * 7 6 5 9 9 C 1.34228 * 108.24590 * 359.97438 * 8 7 6 10 10 C 1.50703 * 126.53202 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47479 * 269.98176 * 10 9 8 12 12 C 1.50699 * 109.47166 * 179.97438 * 11 10 9 13 13 O 1.21273 * 119.99936 * 0.02562 * 12 11 10 14 14 N 1.34772 * 119.99831 * 179.97438 * 12 11 10 15 15 C 1.37139 * 120.00550 * 354.95800 * 14 12 11 16 16 H 1.08006 * 119.99626 * 344.73775 * 15 14 12 17 17 C 1.38887 * 120.00477 * 164.73560 * 15 14 12 18 18 N 1.31422 * 119.99992 * 343.62333 * 17 15 14 19 19 Si 1.86793 * 120.00186 * 163.62633 * 17 15 14 20 20 H 1.48504 * 109.47457 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47570 * 119.99832 * 19 17 15 22 22 H 1.48506 * 109.47228 * 239.99909 * 19 17 15 23 23 C 1.39789 * 119.99977 * 174.95556 * 14 12 11 24 24 C 1.38957 * 120.07791 * 101.20897 * 23 14 12 25 25 C 1.38089 * 119.91767 * 179.79270 * 24 23 14 26 26 C 1.38303 * 120.07990 * 0.46557 * 25 24 23 27 27 C 1.38301 * 120.15979 * 359.78481 * 26 25 24 28 28 C 1.38088 * 120.07539 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47331 * 299.99967 * 1 2 3 30 30 H 1.08998 * 109.47276 * 60.00332 * 1 2 3 31 31 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 32 32 H 1.07998 * 125.37204 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46874 * 29.97989 * 10 9 8 34 34 H 1.08996 * 109.46868 * 149.97712 * 10 9 8 35 35 H 1.08998 * 109.47211 * 300.00191 * 11 10 9 36 36 H 1.08997 * 109.46927 * 59.99934 * 11 10 9 37 37 H 0.96997 * 120.00620 * 185.01737 * 18 17 15 38 38 H 1.07996 * 120.04102 * 0.02562 * 24 23 14 39 39 H 1.08006 * 119.95411 * 180.25099 * 25 24 23 40 40 H 1.08009 * 119.91894 * 179.76911 * 26 25 24 41 41 H 1.07997 * 119.96732 * 179.97438 * 27 26 25 42 42 H 1.07998 * 120.03752 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4019 2.2201 0.0005 5 6 3.5346 1.2779 0.0006 6 7 4.3995 0.2271 0.0006 7 6 5.6126 0.6923 0.0006 8 8 5.5722 2.0323 0.0012 9 6 4.2854 2.4140 0.0010 10 6 3.7697 3.8300 0.0009 11 6 3.5944 4.3091 1.4433 12 6 3.0793 5.7253 1.4431 13 8 2.8723 6.2951 0.3928 14 7 2.8477 6.3582 2.6102 15 6 2.9814 5.6817 3.7956 16 1 3.0269 4.6026 3.7992 17 6 3.0582 6.3840 4.9913 18 7 3.3259 7.6706 4.9816 19 14 2.7811 5.4999 6.6133 20 1 2.4977 4.0655 6.3532 21 1 3.9976 5.6196 7.4565 22 1 1.6270 6.1118 7.3197 23 6 2.4713 7.7045 2.6125 24 6 1.1389 8.0548 2.7941 25 6 0.7714 9.3859 2.8001 26 6 1.7262 10.3694 2.6161 27 6 3.0524 10.0243 2.4300 28 6 3.4279 8.6954 2.4277 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 6.5117 0.0940 0.0003 33 1 4.4819 4.4760 -0.5125 34 1 2.8094 3.8669 -0.5135 35 1 2.8823 3.6631 1.9567 36 1 4.5547 4.2722 1.9575 37 1 3.4515 8.1463 5.8176 38 1 0.3923 7.2871 2.9340 39 1 -0.2634 9.6590 2.9452 40 1 1.4352 11.4096 2.6176 41 1 3.7953 10.7949 2.2862 42 1 4.4637 8.4266 2.2819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352008337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:14 Heat of formation + Delta-G solvation = -74.003720 kcal Electronic energy + Delta-G solvation = -29815.715103 eV Core-core repulsion = 25534.730482 eV Total energy + Delta-G solvation = -4280.984622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.60416 -41.36652 -41.18610 -39.11110 -37.69254 -36.65432 -36.00643 -35.05964 -33.59071 -31.56325 -31.35470 -30.24885 -28.85604 -26.96783 -26.33071 -25.02728 -23.42939 -23.21378 -22.74371 -21.71831 -21.02631 -19.50013 -19.40492 -18.40027 -18.10561 -17.89903 -17.26836 -17.21010 -16.93076 -16.76411 -16.47465 -16.19088 -15.80753 -15.42995 -15.15548 -14.87367 -14.59732 -14.41886 -14.12697 -14.02811 -13.89560 -13.62203 -13.28128 -13.15715 -13.06859 -12.89930 -12.63262 -12.55201 -12.34941 -12.22767 -12.04061 -12.00993 -11.97775 -11.87697 -11.65502 -11.26865 -10.58026 -10.14609 -9.99223 -9.56833 -9.32344 -8.12463 -5.97581 -0.26613 0.77417 0.82398 0.85598 1.26053 1.35378 1.44067 1.54685 1.69403 1.86287 1.89346 2.24054 2.82714 3.04841 3.07121 3.24999 3.40699 3.71669 3.93918 3.98057 4.15167 4.23257 4.25931 4.28888 4.30199 4.39692 4.41653 4.43731 4.59237 4.66288 4.76975 4.89311 4.92211 4.94097 5.07399 5.11885 5.22326 5.36241 5.40469 5.65702 5.78765 5.83288 6.02134 6.24839 6.26455 6.56936 6.60988 7.06420 7.46848 7.89767 8.70190 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011351 B = 0.003371 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.145368 B = 8303.563963 C = 8698.186598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.547 3.453 4 O -0.514 6.514 5 C -0.081 4.081 6 N -0.481 5.481 7 C 0.206 3.794 8 O -0.191 6.191 9 C 0.070 3.930 10 C -0.021 4.021 11 C -0.095 4.095 12 C 0.456 3.544 13 O -0.624 6.624 14 N -0.423 5.423 15 C -0.370 4.370 16 H 0.109 0.891 17 C 0.007 3.993 18 N -0.866 5.866 19 Si 0.982 3.018 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.283 1.283 23 C 0.212 3.788 24 C -0.152 4.152 25 C -0.121 4.121 26 C -0.140 4.140 27 C -0.120 4.120 28 C -0.093 4.093 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.139 0.861 32 H 0.315 0.685 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.270 0.730 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.137 0.863 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 -10.369 -5.339 11.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.392 3.608 4 O -0.404 6.404 5 C -0.197 4.197 6 N -0.209 5.209 7 C -0.022 4.022 8 O -0.077 6.077 9 C 0.012 3.988 10 C -0.059 4.059 11 C -0.135 4.135 12 C 0.248 3.752 13 O -0.512 6.512 14 N -0.139 5.139 15 C -0.495 4.495 16 H 0.126 0.874 17 C -0.198 4.198 18 N -0.502 5.502 19 Si 0.806 3.194 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.208 1.208 23 C 0.122 3.878 24 C -0.172 4.172 25 C -0.139 4.139 26 C -0.158 4.158 27 C -0.139 4.139 28 C -0.113 4.113 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.330 0.670 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.361 -10.293 -5.681 11.835 hybrid contribution -0.054 0.215 1.113 1.135 sum 1.307 -10.077 -4.568 11.141 Atomic orbital electron populations 1.23666 0.73903 1.06113 1.02834 1.86620 1.25350 1.30762 1.83524 1.19636 0.86671 0.82019 0.72501 1.90943 1.66059 1.36515 1.46850 1.20234 0.92401 0.90102 1.16992 1.70822 1.00945 1.30922 1.18166 1.29449 0.99118 0.77202 0.96469 1.84469 1.26818 1.27568 1.68887 1.23580 0.80950 0.97137 0.97123 1.20012 1.02751 0.85362 0.97766 1.21145 1.03039 0.92945 0.96365 1.20587 0.82160 0.89785 0.82708 1.90533 1.58810 1.69893 1.31916 1.41579 1.58135 1.08014 1.06169 1.19942 1.54374 0.92656 0.82577 0.87359 1.26018 0.95160 0.96287 1.02340 1.70088 1.42661 1.09073 1.28330 0.85044 0.77892 0.78795 0.77714 1.18472 1.20036 1.20843 1.17410 0.92247 0.84041 0.94088 1.21136 0.94996 0.97149 1.03913 1.21082 1.00323 0.91685 1.00813 1.21208 0.92638 0.99827 1.02144 1.21085 0.97208 0.94810 1.00771 1.20838 0.97128 0.93570 0.99764 0.91977 0.91479 0.84347 0.67029 0.88265 0.87862 0.89887 0.88292 0.91922 0.88670 0.84356 0.83408 0.84512 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.57 113.37 1.20 1.75 16 2 O -0.35 -9.81 10.58 -56.85 -0.60 -10.41 16 3 C 0.55 17.97 7.96 70.20 0.56 18.52 16 4 O -0.51 -19.33 14.60 19.73 0.29 -19.04 16 5 C -0.08 -2.49 7.04 40.38 0.28 -2.20 16 6 N -0.48 -12.42 11.36 -305.21 -3.47 -15.89 16 7 C 0.21 3.57 13.19 130.53 1.72 5.30 16 8 O -0.19 -4.48 10.72 0.61 0.01 -4.48 16 9 C 0.07 2.07 6.70 25.21 0.17 2.24 16 10 C -0.02 -0.74 4.50 29.85 0.13 -0.60 16 11 C -0.10 -3.77 4.23 29.85 0.13 -3.64 16 12 C 0.46 22.56 7.58 87.66 0.66 23.22 16 13 O -0.62 -33.62 15.96 -3.01 -0.05 -33.67 16 14 N -0.42 -22.00 2.66 -458.91 -1.22 -23.22 16 15 C -0.37 -18.76 9.19 84.02 0.77 -17.98 16 16 H 0.11 5.17 6.46 -2.91 -0.02 5.15 16 17 C 0.01 0.37 5.24 84.91 0.44 0.81 16 18 N -0.87 -44.83 10.34 21.65 0.22 -44.60 16 19 Si 0.98 39.65 29.59 68.60 2.03 41.68 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 21 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 22 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 23 C 0.21 10.89 2.29 38.22 0.09 10.98 16 24 C -0.15 -7.30 9.95 22.41 0.22 -7.08 16 25 C -0.12 -4.80 10.04 22.25 0.22 -4.57 16 26 C -0.14 -5.13 10.04 22.30 0.22 -4.91 16 27 C -0.12 -4.83 10.04 22.25 0.22 -4.60 16 28 C -0.09 -4.53 8.66 22.41 0.19 -4.33 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.32 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.10 3.30 8.10 -2.39 -0.02 3.29 16 34 H 0.10 3.99 6.44 -2.39 -0.02 3.97 16 35 H 0.08 3.34 7.52 -2.39 -0.02 3.32 16 36 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.27 13.39 8.32 -92.71 -0.77 12.61 16 38 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 39 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 41 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 42 H 0.09 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -73.39 372.07 5.52 -67.86 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 1.06 Total: 28.87 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 7.25 Total: 12.90 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -4.46 Total: -83.72 kcal Atomic # 8 Polarization: -67.24 SS G_CDS: -0.35 Total: -67.60 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -73.39 5.52 -67.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352008337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.139 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds