Wall clock time and date at job start Wed Apr 1 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34767 * 117.00160 * 2 1 4 4 O 1.21537 * 120.00213 * 0.02562 * 3 2 1 5 5 C 1.47275 * 120.00092 * 179.97438 * 3 2 1 6 6 N 1.36107 * 126.45620 * 0.02562 * 5 3 2 7 7 C 1.29920 * 108.46967 * 180.02562 * 6 5 3 8 8 O 1.34058 * 109.26810 * 0.02562 * 7 6 5 9 9 C 1.34232 * 108.23935 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.53126 * 180.02562 * 9 8 7 11 11 N 1.46501 * 109.47097 * 269.97617 * 10 9 8 12 12 C 1.34775 * 119.99874 * 180.02562 * 11 10 9 13 13 O 1.21280 * 120.00052 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99691 * 180.02562 * 12 11 10 15 15 C 1.50698 * 109.46915 * 179.97438 * 14 12 11 16 16 C 1.37632 * 120.12884 * 264.99886 * 15 14 12 17 17 C 1.38622 * 120.25175 * 179.97438 * 16 15 14 18 18 C 1.38656 * 120.49870 * 0.02562 * 17 16 15 19 19 C 1.37598 * 120.24760 * 0.02580 * 18 17 16 20 20 C 1.40698 * 120.12748 * 84.72511 * 15 14 12 21 21 C 1.41397 * 120.24559 * 359.97438 * 20 15 14 22 22 H 1.08000 * 119.99771 * 329.70734 * 21 20 15 23 23 C 1.39946 * 119.99865 * 149.70265 * 21 20 15 24 24 N 1.30823 * 119.99937 * 162.01846 * 23 21 20 25 25 Si 1.86800 * 120.00073 * 342.01759 * 23 21 20 26 26 H 1.48497 * 109.46840 * 95.40349 * 25 23 21 27 27 H 1.48497 * 109.46908 * 215.39981 * 25 23 21 28 28 H 1.48497 * 109.47071 * 335.40184 * 25 23 21 29 29 H 1.08995 * 109.47070 * 300.00188 * 1 2 3 30 30 H 1.09006 * 109.47021 * 59.99944 * 1 2 3 31 31 H 1.09001 * 109.47525 * 179.97438 * 1 2 3 32 32 H 1.08009 * 125.36866 * 180.02562 * 7 6 5 33 33 H 1.08991 * 109.47119 * 29.97712 * 10 9 8 34 34 H 1.08997 * 109.46881 * 149.97836 * 10 9 8 35 35 H 0.96997 * 119.99555 * 359.97438 * 11 10 9 36 36 H 1.08997 * 109.46919 * 299.99331 * 14 12 11 37 37 H 1.08997 * 109.47376 * 60.00123 * 14 12 11 38 38 H 1.08004 * 119.87487 * 0.02562 * 16 15 14 39 39 H 1.07996 * 119.74776 * 180.02562 * 17 16 15 40 40 H 1.07998 * 119.87670 * 179.97438 * 18 17 16 41 41 H 1.08006 * 120.12809 * 179.97438 * 19 18 17 42 42 H 0.97001 * 120.00175 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2201 0.0005 5 6 3.5346 1.2778 0.0006 6 7 4.3995 0.2269 0.0006 7 6 5.6125 0.6922 0.0018 8 8 5.5724 2.0322 0.0030 9 6 4.2855 2.4139 0.0021 10 6 3.7698 3.8299 0.0024 11 7 3.6009 4.2878 1.3837 12 6 3.1467 5.5326 1.6302 13 8 2.8773 6.2734 0.7085 14 6 2.9736 6.0038 3.0512 15 6 2.4578 7.4198 3.0515 16 6 3.3355 8.4747 3.1566 17 6 2.8639 9.7782 3.1566 18 6 1.5054 10.0351 3.0515 19 6 0.6096 8.9959 2.9465 20 6 1.0776 7.6686 2.9386 21 6 0.1670 6.5930 2.8237 22 1 0.4743 5.6740 2.3468 23 6 -1.1323 6.7194 3.3279 24 7 -2.0711 5.8999 2.9297 25 14 -1.5262 8.0581 4.5698 26 1 -2.0749 9.2431 3.8628 27 1 -2.5295 7.5527 5.5409 28 1 -0.2874 8.4426 5.2927 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 6.5117 0.0938 0.0017 33 1 4.4823 4.4761 -0.5101 34 1 2.8099 3.8671 -0.5126 35 1 3.8154 3.6949 2.1208 36 1 2.2616 5.3573 3.5641 37 1 3.9338 5.9672 3.5657 38 1 4.3958 8.2862 3.2385 39 1 3.5599 10.5999 3.2390 40 1 1.1489 11.0545 3.0530 41 1 -0.4482 9.1982 2.8652 42 1 -2.9716 5.9872 3.2794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363227065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:23 Heat of formation + Delta-G solvation = -97.838688 kcal Electronic energy + Delta-G solvation = -29488.478132 eV Core-core repulsion = 25206.459948 eV Total energy + Delta-G solvation = -4282.018183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.72774 -41.44220 -40.87915 -39.33640 -37.78358 -36.16601 -36.10285 -35.47289 -33.62848 -32.29728 -32.10206 -29.60664 -28.74658 -27.37590 -26.46815 -25.21456 -23.39800 -23.18197 -22.24457 -21.96793 -21.07424 -19.61531 -19.24018 -18.45766 -18.30158 -18.05245 -17.57038 -17.34359 -17.09581 -16.78996 -16.67407 -16.06512 -15.96337 -15.47163 -15.33187 -15.02293 -14.74205 -14.53209 -14.50904 -14.29138 -13.94935 -13.82236 -13.70288 -13.13646 -13.12497 -12.70541 -12.67105 -12.65644 -12.49441 -12.12297 -11.98604 -11.94869 -11.89920 -11.52384 -11.36743 -11.05790 -10.95907 -10.35918 -10.22070 -9.38091 -9.27792 -8.84726 -6.43679 -0.49319 0.76621 0.81533 0.92446 1.10686 1.26848 1.40007 1.49444 1.55440 1.73410 1.75463 2.14181 2.33236 2.66705 2.94121 3.16566 3.53869 3.58770 3.91518 4.02208 4.07989 4.20701 4.24132 4.29799 4.32826 4.46013 4.51680 4.54070 4.60493 4.63569 4.74035 4.95132 4.97537 4.98647 5.13157 5.18238 5.25008 5.39253 5.69075 5.88565 5.97562 6.07452 6.16659 6.31436 6.43790 6.49741 6.52271 6.82191 6.92350 7.29028 8.23506 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.003405 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.726613 B = 8221.937283 C =10119.325336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.344 6.344 3 C 0.539 3.461 4 O -0.513 6.513 5 C -0.049 4.049 6 N -0.484 5.484 7 C 0.225 3.775 8 O -0.180 6.180 9 C 0.041 3.959 10 C 0.202 3.798 11 N -0.720 5.720 12 C 0.524 3.476 13 O -0.567 6.567 14 C -0.072 4.072 15 C -0.173 4.173 16 C -0.076 4.076 17 C -0.229 4.229 18 C -0.091 4.091 19 C -0.258 4.258 20 C 0.084 3.916 21 C -0.470 4.470 22 H 0.053 0.947 23 C 0.046 3.954 24 N -0.854 5.854 25 Si 0.965 3.035 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.248 1.248 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.142 0.858 32 H 0.320 0.680 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.412 0.588 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.427 -12.481 -1.859 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.259 6.259 3 C 0.383 3.617 4 O -0.401 6.401 5 C -0.167 4.167 6 N -0.211 5.211 7 C -0.004 4.004 8 O -0.066 6.066 9 C -0.017 4.017 10 C 0.078 3.922 11 N -0.375 5.375 12 C 0.312 3.688 13 O -0.444 6.444 14 C -0.111 4.111 15 C -0.175 4.175 16 C -0.094 4.094 17 C -0.248 4.248 18 C -0.109 4.109 19 C -0.277 4.277 20 C 0.081 3.919 21 C -0.500 4.500 22 H 0.071 0.929 23 C -0.168 4.168 24 N -0.481 5.481 25 Si 0.789 3.211 26 H -0.194 1.194 27 H -0.205 1.205 28 H -0.172 1.172 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.334 0.666 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.248 0.752 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.568 -12.457 -2.558 19.337 hybrid contribution -1.002 0.524 0.294 1.168 sum 13.566 -11.933 -2.264 18.208 Atomic orbital electron populations 1.23639 0.73983 1.06140 1.02583 1.86603 1.25141 1.30759 1.83424 1.19828 0.87026 0.82064 0.72764 1.91041 1.66208 1.36635 1.46263 1.20260 0.92008 0.90333 1.14081 1.70920 1.01024 1.30733 1.18464 1.29610 0.99033 0.77037 0.94692 1.84486 1.26049 1.27531 1.68508 1.23155 0.81345 0.96256 1.00918 1.19628 1.01524 0.85059 0.85994 1.45774 1.69094 1.15183 1.07488 1.21175 0.74547 0.80552 0.92498 1.90679 1.49988 1.56049 1.47714 1.20337 1.03629 0.95044 0.92100 1.19522 0.93020 0.94041 1.10926 1.20913 0.98607 0.92407 0.97458 1.20890 0.94856 0.96674 1.12404 1.20982 0.94100 0.97816 0.97991 1.21142 0.98173 0.93788 1.14591 1.17721 0.93036 0.92108 0.88986 1.19341 0.95414 1.00666 1.34588 0.92876 1.26825 0.94870 0.97838 0.97220 1.69772 1.03202 1.37361 1.37731 0.85492 0.78999 0.77995 0.78566 1.19396 1.20505 1.17169 0.92518 0.91780 0.83996 0.66567 0.87904 0.89325 0.75188 0.88946 0.85444 0.85174 0.85237 0.86082 0.89288 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.57 113.37 1.20 1.86 16 2 O -0.34 -9.65 10.58 -56.78 -0.60 -10.25 16 3 C 0.54 17.03 7.96 70.20 0.56 17.59 16 4 O -0.51 -19.87 14.60 19.71 0.29 -19.58 16 5 C -0.05 -1.28 7.04 40.38 0.28 -1.00 16 6 N -0.48 -10.08 11.36 -305.19 -3.47 -13.54 16 7 C 0.22 2.48 13.19 130.53 1.72 4.20 16 8 O -0.18 -2.88 10.72 0.55 0.01 -2.87 16 9 C 0.04 0.96 6.81 25.21 0.17 1.13 16 10 C 0.20 5.80 5.66 85.63 0.48 6.29 16 11 N -0.72 -22.03 5.55 -466.80 -2.59 -24.62 16 12 C 0.52 20.81 7.42 87.66 0.65 21.46 16 13 O -0.57 -28.12 16.03 -3.03 -0.05 -28.17 16 14 C -0.07 -2.71 5.19 29.10 0.15 -2.55 16 15 C -0.17 -7.91 4.43 -19.41 -0.09 -8.00 16 16 C -0.08 -3.04 9.66 22.22 0.21 -2.82 16 17 C -0.23 -9.07 10.05 22.46 0.23 -8.84 16 18 C -0.09 -3.94 10.02 22.22 0.22 -3.72 16 19 C -0.26 -13.06 7.17 22.73 0.16 -12.89 16 20 C 0.08 4.46 5.10 -21.29 -0.11 4.35 16 21 C -0.47 -27.35 8.56 23.46 0.20 -27.15 16 22 H 0.05 3.37 6.99 -2.91 -0.02 3.35 16 23 C 0.05 2.58 5.41 85.26 0.46 3.04 16 24 N -0.85 -49.31 13.93 21.83 0.30 -49.00 16 25 Si 0.97 44.93 24.52 68.60 1.68 46.61 16 26 H -0.27 -12.14 6.71 99.48 0.67 -11.47 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.25 -11.56 6.85 99.48 0.68 -10.88 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.32 -0.93 8.06 -2.91 -0.02 -0.96 16 33 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.09 3.17 6.48 -2.39 -0.02 3.15 16 35 H 0.41 10.08 8.46 -92.71 -0.78 9.30 16 36 H 0.09 3.68 7.15 -2.39 -0.02 3.66 16 37 H 0.13 3.49 8.05 -2.39 -0.02 3.47 16 38 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 39 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 40 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 41 H 0.09 4.57 4.74 -2.91 -0.01 4.56 16 42 H 0.29 15.10 8.30 -92.71 -0.77 14.33 16 Total: -1.00 -83.48 367.16 2.33 -81.14 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.25 Total: 27.34 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 6.51 Total: -7.06 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -5.75 Total: -87.17 kcal Atomic # 8 Polarization: -60.52 SS G_CDS: -0.36 Total: -60.87 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.68 Total: 46.61 kcal Total: -83.48 2.33 -81.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363227065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.695 kcal (2) G-P(sol) polarization free energy of solvation -83.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds