Wall clock time and date at job start Wed Apr 1 2020 03:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99823 * 2 1 4 4 O 1.20830 * 119.99995 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99890 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47197 * 185.25790 * 5 3 2 7 7 H 1.09007 * 109.39709 * 304.24097 * 6 5 3 8 8 C 1.53176 * 109.39991 * 63.97725 * 6 5 3 9 9 S 1.81817 * 108.67942 * 182.77024 * 8 6 5 10 10 O 1.42108 * 108.70151 * 193.42854 * 9 8 6 11 11 O 1.42101 * 108.70438 * 61.94293 * 9 8 6 12 12 C 1.81817 * 101.01877 * 307.68475 * 9 8 6 13 13 C 1.53176 * 108.67753 * 52.31675 * 12 9 8 14 14 N 1.46465 * 109.40262 * 184.41932 * 6 5 3 15 15 C 1.46894 * 111.00141 * 42.86567 * 14 6 5 16 16 C 1.52997 * 109.47248 * 72.24950 * 15 14 6 17 17 H 1.08992 * 109.47231 * 53.38407 * 16 15 14 18 18 C 1.47207 * 109.47059 * 293.38876 * 16 15 14 19 19 N 4.02451 * 112.72426 * 313.00969 * 2 1 3 20 20 C 1.53004 * 109.47343 * 173.39101 * 16 15 14 21 21 C 1.50700 * 109.46961 * 184.99847 * 20 16 15 22 22 H 1.07999 * 120.00331 * 359.97438 * 21 20 16 23 23 C 1.37881 * 119.99882 * 179.97438 * 21 20 16 24 24 N 1.31512 * 119.99731 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99873 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46746 * 90.00097 * 25 23 21 27 27 H 1.48497 * 109.47015 * 210.00048 * 25 23 21 28 28 H 1.48494 * 109.47046 * 330.00016 * 25 23 21 29 29 H 1.09005 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47020 * 299.99379 * 1 2 3 31 31 H 1.08997 * 109.47490 * 59.99682 * 1 2 3 32 32 H 1.09001 * 109.47460 * 65.25899 * 5 3 2 33 33 H 1.08995 * 109.46961 * 305.25564 * 5 3 2 34 34 H 1.09001 * 109.60363 * 302.52910 * 8 6 5 35 35 H 1.08995 * 109.60370 * 62.84906 * 8 6 5 36 36 H 1.09002 * 109.60132 * 292.55511 * 12 9 8 37 37 H 1.08997 * 109.60294 * 172.07442 * 12 9 8 38 38 H 1.09003 * 109.40274 * 57.49519 * 13 12 9 39 39 H 1.09000 * 109.39671 * 177.32388 * 13 12 9 40 40 H 1.08997 * 109.47557 * 192.24655 * 15 14 6 41 41 H 1.09007 * 109.47298 * 312.24884 * 15 14 6 42 42 H 1.09000 * 109.46759 * 304.99471 * 20 16 15 43 43 H 1.08993 * 109.47320 * 64.99938 * 20 16 15 44 44 H 0.97001 * 119.99552 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0004 2.7361 0.1317 7 1 3.5440 3.3230 -0.6654 8 6 3.5438 3.2817 1.4882 9 16 3.9965 5.0396 1.5910 10 8 3.8635 5.4662 2.9401 11 8 3.3142 5.7467 0.5645 12 6 5.7646 4.9681 1.1737 13 6 5.9276 4.1995 -0.1412 14 7 5.4587 2.8219 0.0251 15 6 5.9591 1.9614 -1.0551 16 6 5.5953 2.5770 -2.4076 17 1 5.9477 3.6077 -2.4443 18 6 4.1336 2.5519 -2.5809 19 7 3.0066 2.5321 -2.7144 20 6 6.2555 1.7719 -3.5287 21 6 5.9991 2.4480 -4.8509 22 1 5.4224 3.3604 -4.8880 23 6 6.5006 1.9018 -6.0133 24 7 6.2772 2.4921 -7.1670 25 14 7.4986 0.3240 -5.9491 26 1 6.5898 -0.8424 -6.0866 27 1 8.4849 0.3166 -7.0592 28 1 8.2143 0.2435 -4.6505 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.9513 0.8646 -0.9341 33 1 3.9604 0.7014 0.8383 34 1 2.4627 3.1765 1.5795 35 1 4.0339 2.7280 2.2889 36 1 6.3072 4.4544 1.9673 37 1 6.1540 5.9794 1.0568 38 1 5.3443 4.6888 -0.9213 39 1 6.9793 4.1905 -0.4273 40 1 7.0426 1.8722 -0.9763 41 1 5.5063 0.9733 -0.9720 42 1 7.3296 1.7158 -3.3516 43 1 5.8374 0.7656 -3.5482 44 1 6.6297 2.1076 -7.9848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414028565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:06 Heat of formation + Delta-G solvation = -101.606089 kcal Electronic energy + Delta-G solvation = -29901.042372 eV Core-core repulsion = 25754.304773 eV Total energy + Delta-G solvation = -4146.737599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.97734 -39.68292 -37.11030 -36.68495 -36.14506 -36.04088 -34.27532 -33.26816 -32.39242 -30.34227 -29.49706 -27.32707 -26.80546 -24.19908 -23.80914 -21.75271 -21.49915 -20.06795 -18.96287 -18.10541 -17.34430 -17.25297 -16.90419 -16.72640 -16.50756 -16.24890 -15.83822 -15.70013 -15.38560 -14.87240 -14.28627 -13.92600 -13.67652 -13.61258 -13.39136 -13.29066 -12.89814 -12.79224 -12.65494 -12.46133 -12.40134 -12.23260 -12.16341 -12.13352 -12.01863 -11.77503 -11.69018 -11.52439 -11.37093 -10.93657 -10.89260 -10.79023 -10.57881 -10.38106 -10.30774 -10.26811 -10.01603 -9.46995 -8.70842 -8.58406 -6.19193 -4.21360 -0.12627 2.12603 2.46789 2.51631 3.19183 3.25314 3.27336 3.28964 3.33216 3.40281 3.50726 3.89224 4.13781 4.25991 4.29307 4.39476 4.49903 4.62330 4.78027 4.79910 4.87791 4.96816 5.04462 5.09784 5.11411 5.14728 5.15321 5.29164 5.37577 5.43740 5.47532 5.52324 5.65993 5.70738 5.95899 6.04411 6.28392 6.54520 6.58825 6.77926 6.93676 7.51828 7.64865 8.12151 8.31463 8.83624 9.39620 10.93768 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.004262 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.567621 B = 6568.310383 C = 8155.038124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.494 6.494 5 C -0.115 4.115 6 C 0.093 3.907 7 H 0.089 0.911 8 C -0.598 4.598 9 S 2.408 3.592 10 O -0.946 6.946 11 O -0.930 6.930 12 C -0.594 4.594 13 C 0.057 3.943 14 N -0.545 5.545 15 C 0.050 3.950 16 C -0.029 4.029 17 H 0.113 0.887 18 C 0.220 3.780 19 N -0.442 5.442 20 C -0.001 4.001 21 C -0.533 4.533 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.894 5.894 25 Si 0.878 3.122 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.262 1.262 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.041 0.959 43 H 0.022 0.978 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 -3.790 20.020 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.307 3.693 4 O -0.380 6.380 5 C -0.154 4.154 6 C -0.016 4.016 7 H 0.106 0.894 8 C -0.728 4.728 9 S 2.591 3.409 10 O -0.943 6.943 11 O -0.927 6.927 12 C -0.724 4.724 13 C -0.071 4.071 14 N -0.269 5.269 15 C -0.078 4.078 16 C -0.052 4.052 17 H 0.131 0.869 18 C -0.097 4.097 19 N -0.119 5.119 20 C -0.040 4.040 21 C -0.571 4.571 22 H 0.091 0.909 23 C -0.130 4.130 24 N -0.532 5.532 25 Si 0.705 3.295 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.186 1.186 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.084 0.916 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.059 0.941 43 H 0.040 0.960 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.377 -2.922 20.285 20.631 hybrid contribution 0.836 -1.112 -1.172 1.819 sum -1.542 -4.033 19.113 19.595 Atomic orbital electron populations 1.23266 0.76185 1.03605 1.02719 1.86471 1.23581 1.33323 1.84285 1.23413 0.91803 0.81564 0.72485 1.90674 1.67012 1.36011 1.44324 1.21648 0.88532 0.98030 1.07140 1.21261 0.88549 0.96419 0.95363 0.89352 1.30386 1.12552 1.24752 1.05062 1.08264 0.79022 0.78277 0.75365 1.93585 1.85744 1.79798 1.35196 1.93639 1.71003 1.69230 1.58824 1.30212 1.25018 1.09412 1.07794 1.21874 1.04611 0.87078 0.93535 1.61548 1.08703 1.09835 1.46797 1.22708 1.02776 0.96744 0.85586 1.19820 0.82790 1.04527 0.98038 0.86905 1.29012 0.95035 0.93439 0.92233 1.81164 1.13126 1.08364 1.09200 1.19601 0.96237 0.95203 0.92955 1.21008 1.35360 1.11447 0.89262 0.90875 1.25001 0.95625 0.97100 0.95302 1.69906 1.45253 1.39825 0.98195 0.86818 0.80472 0.83968 0.78261 1.20249 1.21220 1.18629 0.88142 0.91969 0.91604 0.86103 0.86228 0.83697 0.83973 0.83827 0.84239 0.91551 0.86840 0.87163 0.88723 0.94082 0.96019 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.57 10.57 -39.25 -0.41 -4.98 16 3 C 0.47 6.48 7.20 36.00 0.26 6.74 16 4 O -0.49 -8.16 13.87 -18.75 -0.26 -8.42 16 5 C -0.12 -1.31 3.79 -27.88 -0.11 -1.42 16 6 C 0.09 1.12 0.81 -67.86 -0.05 1.06 16 7 H 0.09 1.36 4.95 -51.93 -0.26 1.10 16 8 C -0.60 -6.20 5.61 37.25 0.21 -5.99 16 9 S 2.41 27.54 5.35 -107.50 -0.57 26.96 16 10 O -0.95 -13.07 18.11 -57.79 -1.05 -14.12 16 11 O -0.93 -14.86 18.10 -57.79 -1.05 -15.91 16 12 C -0.59 -4.56 6.58 37.25 0.24 -4.32 16 13 C 0.06 0.53 4.21 -3.97 -0.02 0.51 16 14 N -0.54 -5.26 4.52 -227.13 -1.03 -6.29 16 15 C 0.05 0.51 4.76 -3.83 -0.02 0.50 16 16 C -0.03 -0.44 1.89 -93.40 -0.18 -0.61 16 17 H 0.11 1.63 6.33 -51.93 -0.33 1.30 16 18 C 0.22 4.04 9.29 -20.79 -0.19 3.85 16 19 N -0.44 -9.16 17.02 42.12 0.72 -8.44 16 20 C 0.00 -0.02 3.49 -27.88 -0.10 -0.12 16 21 C -0.53 -13.57 9.15 -34.44 -0.32 -13.89 16 22 H 0.07 2.09 7.84 -52.49 -0.41 1.67 16 23 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 24 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 25 Si 0.88 19.55 27.47 -169.99 -4.67 14.88 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.26 -5.26 6.54 56.52 0.37 -4.89 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.12 1.44 4.46 -51.93 -0.23 1.21 16 33 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.15 1.67 6.03 -51.93 -0.31 1.36 16 35 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.73 6.92 -51.93 -0.36 0.37 16 39 H 0.11 0.80 7.97 -51.93 -0.41 0.39 16 40 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 0.89 5.30 -51.92 -0.28 0.62 16 42 H 0.04 0.72 7.20 -51.93 -0.37 0.35 16 43 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 360.49 15.07 5.43 5.43 Total: -1.00 -37.77 360.49 -7.32 -45.08 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.90 Total: 1.66 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 0.70 Total: -10.41 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.46 Total: -40.18 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -2.77 Total: -43.43 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.67 Total: 14.88 kcal Atomic # 16 Polarization: 27.54 SS G_CDS: -0.57 Total: 26.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.77 -7.32 -45.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414028565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.521 kcal (2) G-P(sol) polarization free energy of solvation -37.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds