Wall clock time and date at job start Wed Apr 1 2020 03:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99823 * 2 1 4 4 O 1.20830 * 119.99995 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99890 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47197 * 185.25790 * 5 3 2 7 7 H 1.09007 * 109.39709 * 304.24097 * 6 5 3 8 8 C 1.53176 * 109.39991 * 63.97725 * 6 5 3 9 9 S 1.81817 * 108.67942 * 182.77024 * 8 6 5 10 10 O 1.42108 * 108.70151 * 193.42854 * 9 8 6 11 11 O 1.42101 * 108.70438 * 61.94293 * 9 8 6 12 12 C 1.81817 * 101.01877 * 307.68475 * 9 8 6 13 13 C 1.53176 * 108.67753 * 52.31675 * 12 9 8 14 14 N 1.46465 * 109.40262 * 184.41932 * 6 5 3 15 15 C 1.46894 * 111.00141 * 42.86567 * 14 6 5 16 16 C 1.52997 * 109.47248 * 72.24950 * 15 14 6 17 17 H 1.08992 * 109.47231 * 53.38407 * 16 15 14 18 18 C 1.47207 * 109.47059 * 293.38876 * 16 15 14 19 19 N 4.02451 * 112.72426 * 313.00969 * 2 1 3 20 20 C 1.53004 * 109.47343 * 173.39101 * 16 15 14 21 21 C 1.50700 * 109.46961 * 184.99847 * 20 16 15 22 22 H 1.07999 * 120.00331 * 359.97438 * 21 20 16 23 23 C 1.37881 * 119.99882 * 179.97438 * 21 20 16 24 24 N 1.31512 * 119.99731 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99873 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46746 * 90.00097 * 25 23 21 27 27 H 1.48497 * 109.47015 * 210.00048 * 25 23 21 28 28 H 1.48494 * 109.47046 * 330.00016 * 25 23 21 29 29 H 1.09005 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47020 * 299.99379 * 1 2 3 31 31 H 1.08997 * 109.47490 * 59.99682 * 1 2 3 32 32 H 1.09001 * 109.47460 * 65.25899 * 5 3 2 33 33 H 1.08995 * 109.46961 * 305.25564 * 5 3 2 34 34 H 1.09001 * 109.60363 * 302.52910 * 8 6 5 35 35 H 1.08995 * 109.60370 * 62.84906 * 8 6 5 36 36 H 1.09002 * 109.60132 * 292.55511 * 12 9 8 37 37 H 1.08997 * 109.60294 * 172.07442 * 12 9 8 38 38 H 1.09003 * 109.40274 * 57.49519 * 13 12 9 39 39 H 1.09000 * 109.39671 * 177.32388 * 13 12 9 40 40 H 1.08997 * 109.47557 * 192.24655 * 15 14 6 41 41 H 1.09007 * 109.47298 * 312.24884 * 15 14 6 42 42 H 1.09000 * 109.46759 * 304.99471 * 20 16 15 43 43 H 1.08993 * 109.47320 * 64.99938 * 20 16 15 44 44 H 0.97001 * 119.99552 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0004 2.7361 0.1317 7 1 3.5440 3.3230 -0.6654 8 6 3.5438 3.2817 1.4882 9 16 3.9965 5.0396 1.5910 10 8 3.8635 5.4662 2.9401 11 8 3.3142 5.7467 0.5645 12 6 5.7646 4.9681 1.1737 13 6 5.9276 4.1995 -0.1412 14 7 5.4587 2.8219 0.0251 15 6 5.9591 1.9614 -1.0551 16 6 5.5953 2.5770 -2.4076 17 1 5.9477 3.6077 -2.4443 18 6 4.1336 2.5519 -2.5809 19 7 3.0066 2.5321 -2.7144 20 6 6.2555 1.7719 -3.5287 21 6 5.9991 2.4480 -4.8509 22 1 5.4224 3.3604 -4.8880 23 6 6.5006 1.9018 -6.0133 24 7 6.2772 2.4921 -7.1670 25 14 7.4986 0.3240 -5.9491 26 1 6.5898 -0.8424 -6.0866 27 1 8.4849 0.3166 -7.0592 28 1 8.2143 0.2435 -4.6505 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.9513 0.8646 -0.9341 33 1 3.9604 0.7014 0.8383 34 1 2.4627 3.1765 1.5795 35 1 4.0339 2.7280 2.2889 36 1 6.3072 4.4544 1.9673 37 1 6.1540 5.9794 1.0568 38 1 5.3443 4.6888 -0.9213 39 1 6.9793 4.1905 -0.4273 40 1 7.0426 1.8722 -0.9763 41 1 5.5063 0.9733 -0.9720 42 1 7.3296 1.7158 -3.3516 43 1 5.8374 0.7656 -3.5482 44 1 6.6297 2.1076 -7.9848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414028565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:05 Heat of formation + Delta-G solvation = -133.500781 kcal Electronic energy + Delta-G solvation = -29902.425429 eV Core-core repulsion = 25754.304773 eV Total energy + Delta-G solvation = -4148.120657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96385 -40.65102 -38.12860 -37.75137 -37.34875 -37.10748 -35.73678 -34.33893 -33.86390 -31.50152 -30.35653 -28.27174 -28.13971 -25.13092 -24.69913 -23.39654 -22.46702 -21.00803 -19.86887 -19.10977 -18.84801 -18.44574 -18.09863 -17.73080 -17.49891 -17.20440 -16.88812 -16.65855 -16.24161 -16.07435 -15.74231 -15.04144 -14.79950 -14.77656 -14.42435 -14.29757 -14.13091 -14.00716 -13.70074 -13.54419 -13.42836 -13.24304 -13.19096 -13.11529 -13.07473 -12.97693 -12.93470 -12.66254 -12.46292 -12.23466 -11.92398 -11.86423 -11.78096 -11.68383 -11.65010 -11.47473 -11.24726 -11.08787 -10.71115 -9.51763 -8.21905 -6.28551 -0.96861 1.09555 1.47479 1.49065 1.58964 1.60027 1.69997 1.90356 1.94324 2.44590 2.53401 2.66991 3.01365 3.13246 3.19700 3.32908 3.44858 3.66391 3.86264 3.95144 4.02333 4.08814 4.18791 4.21274 4.22612 4.26525 4.38279 4.40700 4.55993 4.59722 4.64826 4.78391 4.82874 4.87898 4.94611 5.14950 5.28674 5.32922 5.46386 5.65741 5.72895 5.78105 6.27248 6.63841 6.72548 6.82048 7.36554 8.95430 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.004262 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.567621 B = 6568.310383 C = 8155.038124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.531 6.531 5 C -0.114 4.114 6 C 0.088 3.912 7 H 0.047 0.953 8 C -0.588 4.588 9 S 2.391 3.609 10 O -0.979 6.979 11 O -0.993 6.993 12 C -0.560 4.560 13 C 0.043 3.957 14 N -0.518 5.518 15 C 0.054 3.946 16 C -0.029 4.029 17 H 0.119 0.881 18 C 0.232 3.768 19 N -0.497 5.497 20 C 0.000 4.000 21 C -0.533 4.533 22 H 0.019 0.981 23 C -0.001 4.001 24 N -0.960 5.960 25 Si 0.950 3.050 26 H -0.279 1.279 27 H -0.296 1.296 28 H -0.207 1.207 29 H 0.135 0.865 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.119 0.881 33 H 0.164 0.836 34 H 0.126 0.874 35 H 0.185 0.815 36 H 0.185 0.815 37 H 0.162 0.838 38 H 0.039 0.961 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.031 0.969 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.891 -6.749 23.158 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.421 6.421 5 C -0.152 4.152 6 C -0.022 4.022 7 H 0.065 0.935 8 C -0.718 4.718 9 S 2.581 3.419 10 O -0.976 6.976 11 O -0.991 6.991 12 C -0.694 4.694 13 C -0.085 4.085 14 N -0.240 5.240 15 C -0.074 4.074 16 C -0.052 4.052 17 H 0.136 0.864 18 C -0.084 4.084 19 N -0.174 5.174 20 C -0.039 4.039 21 C -0.571 4.571 22 H 0.037 0.963 23 C -0.198 4.198 24 N -0.601 5.601 25 Si 0.773 3.227 26 H -0.205 1.205 27 H -0.223 1.223 28 H -0.129 1.129 29 H 0.153 0.847 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.136 0.864 33 H 0.182 0.818 34 H 0.145 0.855 35 H 0.202 0.798 36 H 0.203 0.797 37 H 0.180 0.820 38 H 0.058 0.942 39 H 0.170 0.830 40 H 0.173 0.827 41 H 0.129 0.871 42 H 0.096 0.904 43 H 0.050 0.950 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.590 -5.865 23.484 24.258 hybrid contribution -0.492 -0.110 -2.204 2.261 sum 1.098 -5.976 21.280 22.131 Atomic orbital electron populations 1.23503 0.75136 1.05676 1.02084 1.86466 1.24750 1.32798 1.83910 1.24075 0.93052 0.81269 0.71404 1.90669 1.68065 1.37235 1.46089 1.21804 0.86583 0.98139 1.08697 1.21214 0.89936 0.96314 0.94763 0.93534 1.30261 1.12022 1.23776 1.05759 1.08375 0.81207 0.78475 0.73862 1.93536 1.87130 1.80689 1.36217 1.93565 1.74022 1.71344 1.60130 1.30002 1.19726 1.11372 1.08274 1.22154 1.06239 0.86636 0.93515 1.61700 1.06630 1.10076 1.45643 1.22929 1.05510 0.96854 0.82098 1.20109 0.79985 1.04977 1.00097 0.86387 1.29829 0.95889 0.91959 0.90734 1.81169 1.15086 1.10102 1.11042 1.19589 0.98748 0.95204 0.90358 1.21462 1.33214 1.09711 0.92675 0.96282 1.26139 0.97446 1.01521 0.94647 1.70123 1.48003 1.42620 0.99335 0.85680 0.78572 0.78033 0.80446 1.20520 1.22279 1.12901 0.84700 0.91378 0.93563 0.86366 0.81843 0.85549 0.79752 0.79739 0.82018 0.94243 0.83031 0.82689 0.87112 0.90356 0.95036 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -8.93 10.57 -51.41 -0.54 -9.48 16 3 C 0.46 12.65 7.20 71.24 0.51 13.16 16 4 O -0.53 -18.47 13.87 21.95 0.30 -18.16 16 5 C -0.11 -2.31 3.79 29.85 0.11 -2.20 16 6 C 0.09 1.93 0.81 45.06 0.04 1.97 16 7 H 0.05 1.47 4.95 -2.38 -0.01 1.46 16 8 C -0.59 -11.32 5.61 72.04 0.40 -10.91 16 9 S 2.39 53.69 5.35 -56.49 -0.30 53.39 16 10 O -0.98 -26.76 18.11 -127.41 -2.31 -29.06 16 11 O -0.99 -34.04 18.10 -127.41 -2.31 -36.35 16 12 C -0.56 -6.30 6.58 72.04 0.47 -5.82 16 13 C 0.04 0.61 4.21 86.44 0.36 0.97 16 14 N -0.52 -7.57 4.52 -872.50 -3.94 -11.51 16 15 C 0.05 0.81 4.76 86.30 0.41 1.22 16 16 C -0.03 -0.79 1.89 -12.60 -0.02 -0.82 16 17 H 0.12 3.17 6.33 -2.39 -0.02 3.15 16 18 C 0.23 8.57 9.29 89.45 0.83 9.40 16 19 N -0.50 -21.52 17.02 20.00 0.34 -21.18 16 20 C 0.00 0.00 3.49 29.85 0.10 0.10 16 21 C -0.53 -27.23 9.15 25.60 0.23 -27.00 16 22 H 0.02 1.14 7.84 -2.91 -0.02 1.11 16 23 C 0.00 -0.08 5.47 84.66 0.46 0.39 16 24 N -0.96 -58.62 13.96 21.45 0.30 -58.32 16 25 Si 0.95 38.70 27.47 68.60 1.88 40.58 16 26 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.30 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.21 -6.62 6.54 99.48 0.65 -5.97 16 29 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 31 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 32 H 0.12 2.49 4.46 -2.39 -0.01 2.48 16 33 H 0.16 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.13 3.00 6.03 -2.39 -0.01 2.98 16 35 H 0.18 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.18 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.04 0.82 6.92 -2.39 -0.02 0.80 16 39 H 0.15 1.15 7.97 -2.39 -0.02 1.13 16 40 H 0.16 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.11 1.41 5.30 -2.38 -0.01 1.40 16 42 H 0.08 2.23 7.20 -2.39 -0.02 2.21 16 43 H 0.03 1.06 7.57 -2.39 -0.02 1.04 16 44 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -93.18 360.49 -0.47 -93.66 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.98 Total: 14.21 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 5.12 Total: -17.76 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -3.30 Total: -91.02 kcal Atomic # 8 Polarization: -88.19 SS G_CDS: -4.85 Total: -93.05 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.88 Total: 40.58 kcal Atomic # 16 Polarization: 53.69 SS G_CDS: -0.30 Total: 53.39 kcal Total: -93.18 -0.47 -93.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414028565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.846 kcal (2) G-P(sol) polarization free energy of solvation -93.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds