Wall clock time and date at job start Wed Apr 1 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99657 * 2 1 4 4 O 1.20824 * 120.00581 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99810 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.67050 * 59.29444 * 5 3 2 7 7 C 1.54887 * 110.75469 * 296.06187 * 5 3 2 8 8 C 1.54470 * 104.09840 * 203.89524 * 7 5 3 9 9 C 1.53871 * 106.68516 * 23.34305 * 8 7 5 10 10 H 1.09008 * 110.02687 * 240.87348 * 9 8 7 11 11 S 1.81401 * 110.03455 * 119.44473 * 9 8 7 12 12 O 1.42096 * 110.54251 * 178.64466 * 11 9 8 13 13 O 1.42097 * 110.54125 * 315.39996 * 11 9 8 14 14 N 1.65606 * 104.44671 * 67.02322 * 11 9 8 15 15 C 1.46492 * 120.00174 * 263.97231 * 14 11 9 16 16 C 1.50696 * 109.47301 * 95.00321 * 15 14 11 17 17 H 1.08003 * 119.99942 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00466 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99746 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00169 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47247 * 89.99722 * 20 18 16 22 22 H 1.48508 * 109.46928 * 209.99554 * 20 18 16 23 23 H 1.48499 * 109.47113 * 329.99475 * 20 18 16 24 24 C 1.46504 * 119.99692 * 83.97831 * 14 11 9 25 25 C 1.52991 * 109.47229 * 95.78785 * 24 14 11 26 26 C 1.47204 * 109.46987 * 179.61035 * 25 24 14 27 27 N 9.01471 * 162.08870 * 187.36593 * 5 1 2 28 28 C 1.54268 * 106.60207 * 0.15547 * 9 8 7 29 29 H 1.08992 * 109.47407 * 60.00369 * 1 2 3 30 30 H 1.09003 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47301 * 299.99853 * 1 2 3 32 32 H 1.09003 * 110.48405 * 322.42019 * 7 5 3 33 33 H 1.09001 * 110.49083 * 85.06585 * 7 5 3 34 34 H 1.09003 * 109.85304 * 264.09771 * 8 7 5 35 35 H 1.08999 * 110.15912 * 142.75172 * 8 7 5 36 36 H 1.08994 * 109.47343 * 215.00635 * 15 14 11 37 37 H 1.09001 * 109.47023 * 335.00295 * 15 14 11 38 38 H 0.97001 * 120.00007 * 180.02562 * 19 18 16 39 39 H 1.09003 * 109.46369 * 215.78878 * 24 14 11 40 40 H 1.09004 * 109.47010 * 335.78346 * 24 14 11 41 41 H 1.09003 * 109.47520 * 299.61320 * 25 24 14 42 42 H 1.09008 * 109.47531 * 59.61427 * 25 24 14 43 43 H 1.08997 * 110.49053 * 217.71446 * 28 9 8 44 44 H 1.09000 * 110.48246 * 95.07053 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9774 0.7752 -0.8777 7 6 4.1483 0.6679 1.3002 8 6 5.5290 1.3450 1.4464 9 6 5.4594 2.6649 0.6587 10 1 6.1999 2.6617 -0.1413 11 16 5.7510 4.0683 1.7706 12 8 5.7200 5.2915 1.0483 13 8 5.0155 3.9104 2.9761 14 7 7.3329 3.9071 2.2332 15 6 7.6627 3.2412 3.4957 16 6 7.9668 1.7888 3.2332 17 1 7.9188 1.4004 2.2266 18 6 8.3053 0.9554 4.2781 19 7 8.3633 1.4282 5.5040 20 14 8.6829 -0.8448 3.9525 21 1 10.1341 -1.0049 3.6812 22 1 8.3097 -1.6518 5.1420 23 1 7.9051 -1.3087 2.7757 24 6 8.4026 4.4306 1.3799 25 6 8.8026 5.8263 1.8620 26 6 9.8838 6.3484 1.0103 27 7 10.7179 6.7517 0.3524 28 6 4.0387 2.7486 0.0634 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 3.5134 0.9116 2.1521 33 1 4.2580 -0.4120 1.2014 34 1 6.3030 0.7011 1.0288 35 1 5.7387 1.5475 2.4967 36 1 8.5342 3.7200 3.9422 37 1 6.8165 3.3176 4.1786 38 1 8.6018 0.8420 6.2391 39 1 9.2658 3.7670 1.4314 40 1 8.0501 4.4889 0.3501 41 1 7.9410 6.4916 1.8041 42 1 9.1487 5.7691 2.8941 43 1 4.0686 3.1834 -0.9357 44 1 3.3861 3.3305 0.7143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414218375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:58 Heat of formation + Delta-G solvation = -138.437904 kcal Electronic energy + Delta-G solvation = -29251.725855 eV Core-core repulsion = 25103.391108 eV Total energy + Delta-G solvation = -4148.334746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.74461 -37.92374 -37.17088 -36.66631 -36.38311 -35.74688 -35.40467 -32.87488 -30.74645 -30.16592 -28.86183 -27.59679 -27.04194 -23.85603 -23.08169 -22.04762 -20.87837 -20.16357 -18.42720 -17.80838 -17.51268 -17.15028 -16.81442 -16.67470 -16.43801 -16.06456 -15.44312 -15.39115 -14.66637 -14.55603 -14.00553 -13.86641 -13.65322 -13.50766 -13.22469 -12.78288 -12.67680 -12.55060 -12.45334 -12.30217 -12.08154 -11.99713 -11.74285 -11.57896 -11.54855 -11.38164 -11.32390 -11.23251 -11.12985 -11.01610 -10.96294 -10.70931 -10.63226 -10.58111 -10.38863 -10.25457 -9.86967 -9.77874 -8.58411 -8.22806 -6.20859 -4.27274 0.73473 2.06498 2.54475 2.87293 2.97391 3.17755 3.18752 3.27226 3.28189 4.14513 4.14886 4.23604 4.28424 4.36569 4.70995 4.72675 4.90053 4.93198 4.98968 5.07671 5.13917 5.19563 5.25497 5.32265 5.32380 5.39777 5.43478 5.64600 5.66229 5.67853 5.75190 5.95354 6.06017 6.17809 6.21494 6.33060 6.37189 6.60143 7.17108 7.31381 7.48068 7.59817 7.73204 7.75063 8.02972 8.76213 9.38536 10.86940 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.009093 B = 0.004542 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.712624 B = 6162.981768 C = 8407.470240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.469 3.531 4 O -0.506 6.506 5 C -0.083 4.083 6 H 0.119 0.881 7 C -0.112 4.112 8 C -0.100 4.100 9 C -0.599 4.599 10 H 0.135 0.865 11 S 2.608 3.392 12 O -0.974 6.974 13 O -0.943 6.943 14 N -0.983 5.983 15 C 0.239 3.761 16 C -0.547 4.547 17 H 0.068 0.932 18 C 0.069 3.931 19 N -0.885 5.885 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.271 1.271 24 C 0.139 3.861 25 C -0.053 4.053 26 C 0.222 3.778 27 N -0.453 5.453 28 C -0.085 4.085 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.265 0.735 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 -2.691 -9.539 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.312 3.688 4 O -0.394 6.394 5 C -0.102 4.102 6 H 0.137 0.863 7 C -0.150 4.150 8 C -0.138 4.138 9 C -0.707 4.707 10 H 0.154 0.846 11 S 2.701 3.299 12 O -0.964 6.964 13 O -0.934 6.934 14 N -0.820 5.820 15 C 0.118 3.882 16 C -0.586 4.586 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.715 3.285 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.195 1.195 24 C 0.011 3.989 25 C -0.095 4.095 26 C -0.096 4.096 27 N -0.131 5.131 28 C -0.124 4.124 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.108 0.892 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.907 -1.172 -10.026 13.463 hybrid contribution 0.017 -1.780 -0.253 1.798 sum -8.890 -2.952 -10.280 13.908 Atomic orbital electron populations 1.23276 0.76496 1.03652 1.02592 1.86526 1.23309 1.33429 1.84024 1.23738 0.91913 0.81298 0.71856 1.90670 1.67162 1.36360 1.45177 1.22070 0.86518 0.98739 1.02893 0.86281 1.22469 0.97014 1.00847 0.94691 1.22186 0.96784 0.91956 1.02856 1.31209 1.04570 1.19475 1.15484 0.84643 1.05153 0.73938 0.75614 0.75228 1.93535 1.86437 1.40537 1.75884 1.93586 1.70874 1.86897 1.41999 1.57462 1.21226 1.71401 1.31892 1.19354 0.98710 0.91545 0.78620 1.21608 1.48451 0.94226 0.94362 0.91342 1.24910 0.95044 0.98603 0.94954 1.69917 1.47020 1.36090 0.99181 0.86663 0.78754 0.84990 0.78050 1.20669 1.21145 1.19547 1.20885 0.93227 0.92009 0.92821 1.19924 0.92925 0.98593 0.98095 1.29179 0.93854 0.93014 0.93506 1.81190 1.11567 1.09722 1.10606 1.22002 0.92235 0.95371 1.02803 0.91986 0.88116 0.91754 0.90376 0.89660 0.89600 0.86626 0.93928 0.92286 0.92471 0.88831 0.90969 0.86731 0.86431 0.89155 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.06 10.57 -39.25 -0.41 -4.47 16 3 C 0.47 6.07 7.26 36.01 0.26 6.33 16 4 O -0.51 -7.81 15.50 -18.75 -0.29 -8.10 16 5 C -0.08 -0.97 3.39 -89.78 -0.30 -1.27 16 6 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 7 C -0.11 -1.44 6.28 -24.96 -0.16 -1.60 16 8 C -0.10 -1.46 5.07 -25.51 -0.13 -1.59 16 9 C -0.60 -8.09 3.63 -25.61 -0.09 -8.18 16 10 H 0.14 1.44 8.14 -51.92 -0.42 1.02 16 11 S 2.61 43.90 4.49 -107.50 -0.48 43.42 16 12 O -0.97 -17.06 16.86 -57.54 -0.97 -18.03 16 13 O -0.94 -19.27 15.83 -57.54 -0.91 -20.18 16 14 N -0.98 -16.45 2.70 -115.67 -0.31 -16.76 16 15 C 0.24 4.99 5.18 -5.20 -0.03 4.96 16 16 C -0.55 -12.13 7.14 -34.44 -0.25 -12.38 16 17 H 0.07 1.40 6.22 -52.48 -0.33 1.07 16 18 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.88 -23.01 13.29 55.43 0.74 -22.28 16 20 Si 0.89 18.73 29.54 -169.99 -5.02 13.71 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C 0.14 1.91 5.22 -4.04 -0.02 1.89 16 25 C -0.05 -0.67 6.02 -29.52 -0.18 -0.85 16 26 C 0.22 3.09 15.43 -20.75 -0.32 2.77 16 27 N -0.45 -7.34 18.54 42.17 0.78 -6.55 16 28 C -0.09 -1.09 5.44 -25.07 -0.14 -1.23 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.08 1.06 8.04 -51.93 -0.42 0.65 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.18 7.60 -51.93 -0.39 0.78 16 35 H 0.12 2.06 5.02 -51.93 -0.26 1.80 16 36 H 0.04 0.92 8.04 -51.93 -0.42 0.50 16 37 H 0.06 1.39 6.75 -51.93 -0.35 1.04 16 38 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 39 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 40 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 41 H 0.11 1.40 7.78 -51.93 -0.40 1.00 16 42 H 0.12 1.38 8.08 -51.92 -0.42 0.96 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.18 7.15 -51.93 -0.37 0.80 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -31.04 380.55 -7.81 -38.85 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.28 Total: 2.89 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -0.38 Total: -8.23 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 1.21 Total: -45.59 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -2.59 Total: -50.78 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Atomic # 16 Polarization: 43.90 SS G_CDS: -0.48 Total: 43.42 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.04 -7.81 -38.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414218375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.584 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds