Wall clock time and date at job start Wed Apr 1 2020 03:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34902 * 116.99565 * 2 1 4 4 O 1.21616 * 120.00003 * 359.97438 * 3 2 1 5 5 C 1.46469 * 119.99604 * 179.97438 * 3 2 1 6 6 O 1.34939 * 126.00039 * 0.02664 * 5 3 2 7 7 C 1.33908 * 109.38204 * 179.97438 * 6 5 3 8 8 C 1.35166 * 108.78120 * 0.22674 * 7 6 5 9 9 C 1.36641 * 125.99243 * 179.97438 * 5 3 2 10 10 C 1.50695 * 126.65043 * 0.02562 * 9 5 3 11 11 N 1.46500 * 109.47457 * 79.99398 * 10 9 5 12 12 C 1.34770 * 119.99949 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00460 * 359.97438 * 12 11 10 14 14 N 1.34785 * 119.99958 * 180.02562 * 12 11 10 15 15 C 1.39953 * 119.99883 * 174.85092 * 14 12 11 16 16 C 1.39289 * 119.94605 * 145.76961 * 15 14 12 17 17 C 1.38486 * 120.43139 * 180.02562 * 16 15 14 18 18 C 1.37683 * 120.31878 * 359.97330 * 17 16 15 19 19 C 1.40745 * 119.88682 * 0.02562 * 18 17 16 20 20 C 1.41399 * 120.21124 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00294 * 205.17936 * 20 19 18 22 22 C 1.39935 * 120.00418 * 25.17420 * 20 19 18 23 23 N 1.30832 * 119.99742 * 16.78993 * 22 20 19 24 24 Si 1.86800 * 120.00308 * 196.78845 * 22 20 19 25 25 H 1.48494 * 109.47063 * 94.96785 * 24 22 20 26 26 H 1.48500 * 109.46824 * 214.96808 * 24 22 20 27 27 H 1.48496 * 109.47087 * 334.96294 * 24 22 20 28 28 C 1.38231 * 119.94824 * 325.49483 * 15 14 12 29 29 H 1.09007 * 109.46657 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46840 * 299.99756 * 1 2 3 31 31 H 1.08990 * 109.47343 * 60.00514 * 1 2 3 32 32 H 1.07998 * 125.60658 * 179.97438 * 7 6 5 33 33 H 1.08000 * 126.43323 * 179.76611 * 8 7 6 34 34 H 1.09006 * 109.46813 * 199.99924 * 10 9 5 35 35 H 1.09004 * 109.47062 * 319.99272 * 10 9 5 36 36 H 0.97002 * 119.99620 * 0.02562 * 11 10 9 37 37 H 0.96995 * 119.99266 * 354.85098 * 14 12 11 38 38 H 1.08006 * 119.78109 * 359.97438 * 16 15 14 39 39 H 1.07995 * 119.84178 * 180.02562 * 17 16 15 40 40 H 1.08001 * 120.06089 * 179.97438 * 18 17 16 41 41 H 0.96996 * 119.99986 * 179.97438 * 23 22 20 42 42 H 1.07997 * 120.16254 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4019 2.2219 -0.0005 5 6 3.5270 1.2787 0.0006 6 8 4.3763 0.2300 0.0006 7 6 5.6376 0.6797 0.0006 8 6 5.6178 2.0312 0.0057 9 6 4.2711 2.4248 0.0001 10 6 3.7468 3.8376 -0.0005 11 7 3.3519 4.2126 1.3596 12 6 2.8513 5.4402 1.6016 13 8 2.7279 6.2368 0.6913 14 7 2.4884 5.7854 2.8529 15 6 2.0704 7.0931 3.1246 16 6 1.0834 7.3232 4.0803 17 6 0.6619 8.6130 4.3568 18 6 1.2148 9.6830 3.6896 19 6 2.2129 9.4659 2.7214 20 6 2.7851 10.5597 2.0318 21 1 3.2192 10.4141 1.0536 22 6 2.7889 11.8310 2.6165 23 7 2.5751 11.9610 3.9007 24 14 3.0991 13.3425 1.5637 25 1 1.8008 13.9278 1.1431 26 1 3.8627 14.3449 2.3495 27 1 3.8807 12.9565 0.3615 28 6 2.6416 8.1548 2.4484 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 6.5247 0.0637 0.0011 33 1 6.4773 2.6852 0.0105 34 1 4.5259 4.5140 -0.3522 35 1 2.8825 3.9041 -0.6612 36 1 3.4514 3.5775 2.0859 37 1 2.5170 5.1274 3.5650 38 1 0.6436 6.4901 4.6085 39 1 -0.1037 8.7805 5.0998 40 1 0.8826 10.6871 3.9083 41 1 2.5781 12.8421 4.3061 42 1 3.4103 7.9778 1.7107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414445285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:36 Heat of formation + Delta-G solvation = -88.458608 kcal Electronic energy + Delta-G solvation = -28700.101249 eV Core-core repulsion = 24418.489816 eV Total energy + Delta-G solvation = -4281.611433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.92529 -41.44590 -41.30467 -39.19604 -37.83274 -36.62295 -36.06445 -34.87279 -33.90679 -31.73585 -31.66901 -30.06721 -28.80341 -27.50001 -27.16267 -24.46414 -23.39388 -22.72949 -22.64151 -21.70768 -21.25323 -19.73269 -19.60005 -19.11107 -18.14664 -17.95196 -17.56210 -17.11595 -16.91236 -16.81353 -16.58624 -16.38747 -15.95974 -15.52257 -15.12812 -14.98379 -14.70764 -14.63054 -14.36181 -14.07718 -13.97246 -13.59308 -13.49620 -13.28652 -13.13720 -12.98741 -12.90517 -12.76907 -12.17151 -12.03147 -11.97661 -11.93795 -11.57463 -11.35051 -11.12400 -10.93857 -10.77887 -10.17791 -9.87888 -9.37945 -8.71897 -8.57544 -6.35374 -0.41993 0.93426 1.03904 1.17639 1.19756 1.36747 1.45616 1.50868 1.51166 1.91231 2.01366 2.18253 2.22464 2.75697 3.30772 3.37381 3.62155 3.70623 3.75952 4.22892 4.28110 4.29881 4.38407 4.47822 4.49886 4.62903 4.64685 4.72390 4.91585 5.05205 5.09523 5.10940 5.13677 5.19399 5.21953 5.31579 5.35378 5.70833 5.71631 5.83670 6.05844 6.12151 6.17520 6.37672 6.46392 6.70068 6.95691 7.02014 7.05653 7.56857 8.34985 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.002281 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.814556 B =12270.513580 C =13097.318047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.543 3.457 4 O -0.502 6.502 5 C -0.072 4.072 6 O -0.152 6.152 7 C 0.040 3.960 8 C -0.220 4.220 9 C -0.092 4.092 10 C 0.204 3.796 11 N -0.716 5.716 12 C 0.700 3.300 13 O -0.616 6.616 14 N -0.670 5.670 15 C 0.177 3.823 16 C -0.253 4.253 17 C -0.089 4.089 18 C -0.200 4.200 19 C 0.090 3.910 20 C -0.502 4.502 21 H 0.061 0.939 22 C 0.038 3.962 23 N -0.822 5.822 24 Si 0.982 3.018 25 H -0.260 1.260 26 H -0.260 1.260 27 H -0.265 1.265 28 C -0.236 4.236 29 H 0.139 0.861 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.268 0.732 33 H 0.184 0.816 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.408 0.592 37 H 0.416 0.584 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.289 0.711 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 -26.667 -4.114 27.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.270 6.270 3 C 0.388 3.612 4 O -0.392 6.392 5 C -0.123 4.123 6 O -0.046 6.046 7 C -0.029 4.029 8 C -0.239 4.239 9 C -0.095 4.095 10 C 0.080 3.920 11 N -0.373 5.373 12 C 0.401 3.599 13 O -0.495 6.495 14 N -0.318 5.318 15 C 0.083 3.917 16 C -0.275 4.275 17 C -0.108 4.108 18 C -0.220 4.220 19 C 0.087 3.913 20 C -0.531 4.531 21 H 0.080 0.920 22 C -0.177 4.177 23 N -0.448 5.448 24 Si 0.803 3.197 25 H -0.185 1.185 26 H -0.185 1.185 27 H -0.190 1.190 28 C -0.258 4.258 29 H 0.157 0.843 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.284 0.716 33 H 0.201 0.799 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.243 0.757 37 H 0.253 0.747 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.460 -25.867 -4.777 26.680 hybrid contribution -0.009 0.516 0.123 0.531 sum 4.451 -25.351 -4.654 26.156 Atomic orbital electron populations 1.23655 0.73616 1.06202 1.02854 1.86635 1.25678 1.30927 1.83783 1.19443 0.86106 0.82312 0.73341 1.91050 1.64939 1.36530 1.46659 1.20385 0.87810 0.86300 1.17837 1.84190 1.16923 1.33822 1.69667 1.25551 0.85190 0.95191 0.96985 1.22091 0.96089 0.96556 1.09189 1.20544 0.94558 0.93209 1.01205 1.19409 0.99429 0.89931 0.83185 1.44681 1.68322 1.13291 1.11022 1.16049 0.78316 0.82605 0.82967 1.90951 1.61470 1.52213 1.44892 1.42311 1.69076 1.11189 1.09244 1.17295 0.94904 0.82100 0.97379 1.20428 1.03305 0.97199 1.06548 1.20813 0.98988 0.92223 0.98769 1.21305 1.00036 0.98346 1.02270 1.17832 0.90187 0.91931 0.91331 1.19730 1.36074 0.93774 1.03546 0.92035 1.26703 0.91978 1.03051 0.95993 1.69861 1.36257 1.26856 1.11794 0.85201 0.79442 0.76335 0.78729 1.18473 1.18454 1.18958 1.20945 1.05261 0.92474 1.07089 0.84309 0.91729 0.91767 0.71645 0.79870 0.90137 0.91898 0.75653 0.74668 0.85272 0.85790 0.87664 0.89996 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.60 16 2 O -0.35 -6.99 10.58 -56.79 -0.60 -7.60 16 3 C 0.54 12.88 7.93 69.97 0.55 13.44 16 4 O -0.50 -15.05 14.79 19.46 0.29 -14.76 16 5 C -0.07 -1.46 7.18 24.04 0.17 -1.29 16 6 O -0.15 -2.28 10.67 -4.86 -0.05 -2.33 16 7 C 0.04 0.30 12.08 67.11 0.81 1.11 16 8 C -0.22 -2.64 10.83 22.07 0.24 -2.40 16 9 C -0.09 -1.83 5.57 -19.74 -0.11 -1.94 16 10 C 0.20 5.55 5.31 85.63 0.45 6.01 16 11 N -0.72 -20.76 5.55 -482.29 -2.68 -23.44 16 12 C 0.70 27.99 8.29 179.05 1.48 29.48 16 13 O -0.62 -31.48 14.10 -3.99 -0.06 -31.54 16 14 N -0.67 -25.47 5.34 -317.32 -1.70 -27.17 16 15 C 0.18 8.48 6.25 38.10 0.24 8.72 16 16 C -0.25 -11.24 9.97 22.58 0.23 -11.02 16 17 C -0.09 -4.24 10.02 22.20 0.22 -4.02 16 18 C -0.20 -11.12 8.69 22.75 0.20 -10.92 16 19 C 0.09 5.38 5.57 -21.31 -0.12 5.26 16 20 C -0.50 -30.03 9.05 23.46 0.21 -29.82 16 21 H 0.06 3.72 7.90 -2.91 -0.02 3.70 16 22 C 0.04 2.03 5.16 85.25 0.44 2.46 16 23 N -0.82 -44.79 10.94 21.82 0.24 -44.55 16 24 Si 0.98 41.10 29.59 68.60 2.03 43.13 16 25 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 26 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 C -0.24 -13.37 8.39 22.85 0.19 -13.18 16 29 H 0.14 0.89 8.14 -2.38 -0.02 0.88 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.27 -0.94 8.06 -2.91 -0.02 -0.96 16 33 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.06 2.06 7.02 -2.39 -0.02 2.04 16 36 H 0.41 9.10 8.48 -92.71 -0.79 8.31 16 37 H 0.42 11.77 8.84 -92.71 -0.82 10.95 16 38 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 39 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 40 H 0.11 6.03 6.17 -2.91 -0.02 6.01 16 41 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 42 H 0.08 5.03 6.48 -2.91 -0.02 5.01 16 Total: -1.00 -83.36 371.69 3.38 -79.98 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -0.50 Total: 34.78 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 6.41 Total: -6.51 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -4.14 Total: -95.16 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -0.42 Total: -56.22 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -83.36 3.38 -79.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414445285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.481 kcal (2) G-P(sol) polarization free energy of solvation -83.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds