Wall clock time and date at job start Wed Apr 1 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35534 * 116.99699 * 2 1 4 4 C 1.38820 * 120.89494 * 0.27942 * 3 2 1 5 5 C 1.38705 * 119.19495 * 180.26000 * 4 3 2 6 6 O 1.35525 * 119.47148 * 179.73056 * 5 4 3 7 7 N 1.32598 * 121.05629 * 359.45123 * 5 4 3 8 8 C 1.31606 * 121.97563 * 0.27613 * 7 5 4 9 9 C 1.39542 * 120.67017 * 0.02562 * 8 7 5 10 10 C 1.47345 * 120.55587 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99838 * 179.97438 * 10 9 8 12 12 N 1.34773 * 119.99689 * 0.02562 * 10 9 8 13 13 C 1.46507 * 119.99707 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.46865 * 179.97438 * 13 12 10 15 15 C 1.38329 * 119.96432 * 269.72231 * 14 13 12 16 16 C 1.38281 * 120.13750 * 179.77125 * 15 14 13 17 17 C 1.38122 * 120.06612 * 0.50392 * 16 15 14 18 18 C 1.38852 * 119.93485 * 359.74923 * 17 16 15 19 19 O 1.35747 * 120.06892 * 179.97438 * 18 17 16 20 20 C 1.34823 * 117.00479 * 354.48880 * 19 18 17 21 21 H 1.08005 * 119.99833 * 5.06620 * 20 19 18 22 22 C 1.38654 * 120.00603 * 185.05065 * 20 19 18 23 23 N 1.31556 * 119.99558 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00423 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46677 * 60.00630 * 24 22 20 26 26 H 1.48494 * 109.47084 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47109 * 300.00667 * 24 22 20 28 28 C 1.38074 * 119.96975 * 89.99979 * 14 13 12 29 29 H 1.08996 * 109.47458 * 299.99608 * 1 2 3 30 30 H 1.09006 * 109.47197 * 60.00092 * 1 2 3 31 31 H 1.09005 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.40057 * 359.97438 * 4 3 2 33 33 H 0.96705 * 113.99494 * 269.73033 * 6 5 4 34 34 H 1.07997 * 119.66521 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00718 * 359.97438 * 12 10 9 36 36 H 1.08999 * 109.46824 * 299.99920 * 13 12 10 37 37 H 1.08999 * 109.47088 * 59.99973 * 13 12 10 38 38 H 1.07997 * 119.93091 * 359.97438 * 15 14 13 39 39 H 1.07999 * 119.96126 * 180.25611 * 16 15 14 40 40 H 1.08006 * 120.03330 * 179.72514 * 17 16 15 41 41 H 0.97008 * 120.00018 * 179.97438 * 23 22 20 42 42 H 1.08007 * 120.03392 * 359.95401 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2077 0.0000 4 6 1.3064 2.3835 0.0058 5 6 1.9724 3.6002 0.0001 6 8 1.2575 4.7516 0.0002 7 7 3.2972 3.6548 0.0001 8 6 4.0395 2.5681 0.0001 9 6 3.4500 1.3034 -0.0004 10 6 4.2835 0.0883 -0.0010 11 8 3.7589 -1.0089 -0.0010 12 7 5.6272 0.1930 -0.0005 13 6 6.4559 -1.0151 -0.0016 14 6 7.9117 -0.6255 -0.0014 15 6 8.5805 -0.4514 -1.1996 16 6 9.9151 -0.0894 -1.2036 17 6 10.5871 0.0895 -0.0102 18 6 9.9199 -0.0896 1.1943 19 8 10.5779 0.0849 2.3688 20 6 11.9038 0.3193 2.2987 21 1 12.3803 0.4425 1.3374 22 6 12.6555 0.4025 3.4608 23 7 12.0751 0.2522 4.6318 24 14 14.4924 0.7281 3.3638 25 1 14.7293 2.0297 2.6893 26 1 15.0608 0.7699 4.7350 27 1 15.1471 -0.3570 2.5898 28 6 8.5780 -0.4483 1.1949 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2269 2.3513 0.0100 33 1 1.0501 5.0857 -0.8833 34 1 5.1159 2.6561 -0.0003 35 1 6.0456 1.0681 -0.0001 36 1 6.2375 -1.6064 0.8876 37 1 6.2380 -1.6044 -0.8923 38 1 8.0585 -0.5954 -2.1340 39 1 10.4334 0.0498 -2.1408 40 1 11.6307 0.3679 -0.0139 41 1 12.6011 0.3101 5.4449 42 1 8.0563 -0.5880 2.1302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417642113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:54 Heat of formation + Delta-G solvation = -97.370494 kcal Electronic energy + Delta-G solvation = -28248.792465 eV Core-core repulsion = 23966.794584 eV Total energy + Delta-G solvation = -4281.997881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.17350 -40.92214 -40.25506 -39.77879 -38.42796 -37.83883 -35.78069 -34.27460 -32.94631 -32.51200 -31.48864 -30.67269 -28.58457 -27.58720 -26.89123 -25.15938 -24.05650 -23.24028 -22.46070 -21.88095 -20.38329 -19.78059 -19.11751 -18.73480 -18.44190 -17.89803 -17.12186 -16.82660 -16.64950 -16.54081 -16.26728 -16.11530 -15.97360 -15.88353 -15.50159 -15.45913 -15.01494 -14.74458 -14.32379 -14.15104 -13.94730 -13.73006 -13.63194 -13.29027 -13.01399 -12.97831 -12.57042 -12.51586 -12.49983 -12.36808 -12.24935 -12.13617 -11.35807 -11.18413 -10.79188 -10.61691 -10.32864 -10.23048 -9.94069 -9.73855 -9.01259 -8.45553 -6.14013 -0.58892 0.06186 0.39850 0.73048 1.36551 1.46870 1.52602 1.70235 2.00679 2.14746 2.18941 2.44107 2.64565 2.86560 3.17201 3.37310 3.43110 3.56416 3.62553 3.84320 4.05828 4.12230 4.18406 4.30810 4.32088 4.33249 4.39199 4.44083 4.55370 4.58039 4.71185 4.73569 4.77133 5.03974 5.13188 5.14739 5.27898 5.32092 5.64564 5.72837 5.74150 6.03041 6.05716 6.18865 6.46456 6.50957 6.73894 6.99256 7.15059 7.80041 8.77377 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.002105 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.318616 B =13299.854637 C =13953.248021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.299 6.299 3 C 0.230 3.770 4 C -0.279 4.279 5 C 0.371 3.629 6 O -0.484 6.484 7 N -0.551 5.551 8 C 0.205 3.795 9 C -0.254 4.254 10 C 0.568 3.432 11 O -0.560 6.560 12 N -0.710 5.710 13 C 0.176 3.824 14 C -0.059 4.059 15 C -0.167 4.167 16 C -0.069 4.069 17 C -0.234 4.234 18 C 0.112 3.888 19 O -0.232 6.232 20 C -0.412 4.412 21 H 0.104 0.896 22 C -0.024 4.024 23 N -0.922 5.922 24 Si 1.017 2.983 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.257 1.257 28 C -0.181 4.181 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.181 0.819 33 H 0.429 0.571 34 H 0.189 0.811 35 H 0.410 0.590 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.120 0.880 41 H 0.272 0.728 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.990 5.040 -15.699 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.208 6.208 3 C 0.173 3.827 4 C -0.301 4.301 5 C 0.194 3.806 6 O -0.296 6.296 7 N -0.274 5.274 8 C 0.047 3.953 9 C -0.260 4.260 10 C 0.355 3.645 11 O -0.439 6.439 12 N -0.363 5.363 13 C 0.053 3.947 14 C -0.060 4.060 15 C -0.185 4.185 16 C -0.087 4.087 17 C -0.253 4.253 18 C 0.061 3.939 19 O -0.139 6.139 20 C -0.488 4.488 21 H 0.121 0.879 22 C -0.221 4.221 23 N -0.560 5.560 24 Si 0.837 3.163 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.182 1.182 28 C -0.200 4.200 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.198 0.802 33 H 0.293 0.707 34 H 0.205 0.795 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.014 4.795 -14.670 26.886 hybrid contribution 0.539 -0.104 0.211 0.588 sum -21.475 4.692 -14.460 26.311 Atomic orbital electron populations 1.23613 0.75498 1.06308 1.03295 1.86365 1.24105 1.25045 1.85268 1.19328 0.90803 0.85639 0.86887 1.22258 1.03508 0.90297 1.14070 1.19207 0.86362 0.85900 0.89118 1.84669 1.70689 1.37936 1.36323 1.67279 1.07469 1.33445 1.19173 1.22917 1.00690 0.84275 0.87467 1.20459 0.91951 0.95506 1.18112 1.17880 0.82047 0.88298 0.76226 1.90808 1.73381 1.28695 1.51052 1.45886 1.05022 1.10547 1.74831 1.20059 0.84695 0.86807 1.03108 1.19424 0.94592 0.99791 0.92171 1.21010 0.94663 1.05444 0.97431 1.21163 0.94606 0.95956 0.96979 1.21380 1.01414 1.09916 0.92614 1.19858 0.93000 0.94320 0.86675 1.83946 1.22954 1.79825 1.27189 1.21785 0.80796 1.50686 0.95549 0.87866 1.26583 1.05706 0.96304 0.93527 1.70185 1.38801 1.48586 0.98427 0.84661 0.73677 0.79788 0.78206 1.17999 1.19926 1.18169 1.20228 0.92202 1.08921 0.98686 0.90767 0.90040 0.86381 0.80181 0.70715 0.79459 0.75287 0.91717 0.89110 0.83266 0.83318 0.86180 0.91919 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.18 16 2 O -0.30 -6.58 8.71 -68.02 -0.59 -7.18 16 3 C 0.23 4.86 6.74 23.06 0.16 5.01 16 4 C -0.28 -4.30 9.02 22.52 0.20 -4.10 16 5 C 0.37 6.49 7.73 84.69 0.65 7.15 16 6 O -0.48 -6.30 13.54 -88.29 -1.20 -7.50 16 7 N -0.55 -11.72 10.36 -307.95 -3.19 -14.91 16 8 C 0.21 4.14 10.71 85.04 0.91 5.05 16 9 C -0.25 -5.89 5.90 -19.91 -0.12 -6.00 16 10 C 0.57 15.64 7.76 86.64 0.67 16.31 16 11 O -0.56 -19.28 15.28 16.28 0.25 -19.03 16 12 N -0.71 -17.42 5.50 -470.18 -2.59 -20.00 16 13 C 0.18 4.76 5.80 85.63 0.50 5.25 16 14 C -0.06 -1.83 5.25 -19.88 -0.10 -1.94 16 15 C -0.17 -4.58 9.70 22.30 0.22 -4.37 16 16 C -0.07 -2.12 10.04 22.25 0.22 -1.89 16 17 C -0.23 -9.50 9.17 22.39 0.21 -9.30 16 18 C 0.11 5.32 6.65 22.58 0.15 5.47 16 19 O -0.23 -13.70 9.76 -22.64 -0.22 -13.92 16 20 C -0.41 -23.52 9.49 67.92 0.64 -22.88 16 21 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 22 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 23 N -0.92 -56.48 13.67 21.61 0.30 -56.18 16 24 Si 1.02 42.32 29.55 68.60 2.03 44.35 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 28 C -0.18 -7.32 9.65 22.39 0.22 -7.10 16 29 H 0.07 0.57 7.69 -2.39 -0.02 0.55 16 30 H 0.08 0.48 7.72 -2.38 -0.02 0.47 16 31 H 0.12 0.96 8.14 -2.38 -0.02 0.95 16 32 H 0.18 1.56 6.45 -2.91 -0.02 1.54 16 33 H 0.43 0.83 9.06 -74.05 -0.67 0.15 16 34 H 0.19 2.93 6.41 -2.91 -0.02 2.91 16 35 H 0.41 8.49 6.51 -92.71 -0.60 7.89 16 36 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 37 H 0.09 2.23 8.08 -2.39 -0.02 2.21 16 38 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 39 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 40 H 0.12 4.98 5.64 -2.91 -0.02 4.96 16 41 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 42 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -82.73 368.10 0.73 -82.00 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.16 Total: 25.40 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 6.11 Total: -13.03 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -5.48 Total: -91.10 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -1.76 Total: -47.63 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -82.73 0.73 -82.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417642113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.369 kcal (2) G-P(sol) polarization free energy of solvation -82.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds