Wall clock time and date at job start Wed Apr 1 2020 03:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34644 * 117.00379 * 2 1 4 4 O 1.21411 * 119.99822 * 0.02562 * 3 2 1 5 5 C 1.48267 * 120.00256 * 180.02562 * 3 2 1 6 6 C 1.41908 * 126.87848 * 179.71084 * 5 3 2 7 7 C 1.36410 * 103.84359 * 179.91309 * 6 5 3 8 8 N 1.38780 * 126.76410 * 180.10712 * 7 6 5 9 9 C 1.34782 * 119.99611 * 180.26055 * 8 7 6 10 10 O 1.21271 * 120.00020 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99817 * 180.02562 * 9 8 7 12 12 C 1.52998 * 109.47296 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.47025 * 305.00355 * 12 11 9 14 14 C 1.50706 * 109.46923 * 65.00088 * 12 11 9 15 15 H 1.08001 * 120.00106 * 234.68536 * 14 12 11 16 16 C 1.37879 * 119.99945 * 54.68058 * 14 12 11 17 17 N 1.31511 * 119.99699 * 4.86886 * 16 14 12 18 18 Si 1.86797 * 119.99820 * 184.87405 * 16 14 12 19 19 H 1.48507 * 109.47216 * 60.00034 * 18 16 14 20 20 H 1.48502 * 109.47148 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47233 * 299.99862 * 18 16 14 22 22 C 1.50696 * 109.47380 * 184.99740 * 12 11 9 23 23 C 1.38238 * 119.99838 * 151.48352 * 22 12 11 24 24 C 1.38236 * 119.99606 * 179.78855 * 23 22 12 25 25 C 1.38230 * 120.00308 * 0.45021 * 24 23 22 26 26 C 1.38235 * 120.00153 * 359.80436 * 25 24 23 27 27 C 1.38236 * 120.00239 * 331.76579 * 22 12 11 28 28 O 1.34193 * 106.46789 * 0.34673 * 7 6 5 29 29 N 1.20878 * 111.78692 * 359.76505 * 28 7 6 30 30 H 1.08996 * 109.47074 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47278 * 299.99696 * 1 2 3 32 32 H 1.09000 * 109.47338 * 59.99896 * 1 2 3 33 33 H 1.07997 * 128.07983 * 0.03544 * 6 5 3 34 34 H 0.96991 * 120.00452 * 0.26198 * 8 7 6 35 35 H 1.08994 * 109.47268 * 299.99855 * 11 9 8 36 36 H 1.09006 * 109.47093 * 59.99943 * 11 9 8 37 37 H 0.97003 * 119.99381 * 179.97438 * 17 16 14 38 38 H 1.07995 * 119.99995 * 0.02562 * 23 22 12 39 39 H 1.08002 * 119.99937 * 180.27533 * 24 23 22 40 40 H 1.07996 * 120.00344 * 179.83479 * 25 24 23 41 41 H 1.07995 * 120.00501 * 180.02562 * 26 25 24 42 42 H 1.07996 * 119.99601 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4021 2.2179 0.0005 5 6 3.5440 1.2772 -0.0006 6 6 4.3350 2.4553 -0.0064 7 6 5.6166 1.9880 -0.0023 8 7 6.7778 2.7479 -0.0032 9 6 7.9808 2.1401 -0.0040 10 8 8.0484 0.9293 -0.0034 11 6 9.2419 2.9653 -0.0044 12 6 10.4584 2.0375 -0.0047 13 1 10.3901 1.3485 0.8371 14 6 10.4934 1.2553 -1.2924 15 1 10.5381 0.1765 -1.2679 16 6 10.4681 1.9169 -2.5018 17 7 10.5103 3.2310 -2.5334 18 14 10.3739 0.9468 -4.0953 19 1 9.1323 0.1320 -4.1061 20 1 10.3595 1.8853 -5.2461 21 1 11.5542 0.0519 -4.2006 22 6 11.7162 2.8583 0.1186 23 6 12.8398 2.3160 0.7140 24 6 13.9949 3.0675 0.8232 25 6 14.0236 4.3643 0.3454 26 6 12.8984 4.9084 -0.2451 27 6 11.7446 4.1555 -0.3583 28 8 5.5331 0.6487 -0.0026 29 7 4.3849 0.2707 -0.0016 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 4.0006 3.4822 -0.0108 34 1 6.7238 3.7163 -0.0033 35 1 9.2641 3.5944 -0.8942 36 1 9.2650 3.5939 0.8857 37 1 10.4929 3.6964 -3.3843 38 1 12.8163 1.3040 1.0903 39 1 14.8742 2.6424 1.2843 40 1 14.9252 4.9523 0.4332 41 1 12.9209 5.9214 -0.6188 42 1 10.8655 4.5805 -0.8196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460276493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:34 Heat of formation + Delta-G solvation = -16.711659 kcal Electronic energy + Delta-G solvation = -29106.390015 eV Core-core repulsion = 24827.889763 eV Total energy + Delta-G solvation = -4278.500252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.04656 -40.53490 -39.58473 -38.21699 -36.80032 -35.33228 -34.37165 -33.95212 -31.28609 -30.59506 -29.88210 -28.52275 -28.33302 -26.12994 -25.07299 -23.25511 -22.87106 -21.82417 -21.25265 -20.19020 -19.44415 -18.64548 -17.88674 -17.56455 -16.97684 -16.54546 -16.51180 -16.13178 -15.73873 -15.40200 -15.13269 -14.46312 -14.02027 -13.96591 -13.82010 -13.62337 -13.54346 -13.25053 -12.98763 -12.47640 -12.32048 -11.85881 -11.77611 -11.64194 -11.56588 -11.26739 -11.13405 -11.11834 -10.96397 -10.87961 -10.65423 -10.57729 -10.27086 -10.05235 -9.51743 -9.43689 -9.19458 -8.58690 -8.43297 -7.87922 -7.53617 -6.10383 -4.21317 0.85790 1.53376 2.16195 2.27127 2.42350 2.50572 2.70614 3.27452 3.29244 3.30670 3.38089 3.64854 3.84449 4.34893 4.75223 4.79596 4.84443 4.87675 4.88760 5.01827 5.12396 5.22633 5.49096 5.69161 5.75626 5.81590 5.91876 5.93888 6.12488 6.31700 6.36110 6.38285 6.59784 6.68326 6.89680 7.05223 7.14864 7.23169 7.30018 7.39097 7.45737 7.60302 7.82153 7.97813 8.07309 8.09834 8.20515 8.53256 8.78728 9.43727 10.83386 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.017253 B = 0.002571 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.538212 B =10887.161436 C =11648.868559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.343 6.343 3 C 0.558 3.442 4 O -0.489 6.489 5 C 0.003 3.997 6 C -0.246 4.246 7 C 0.244 3.756 8 N -0.637 5.637 9 C 0.514 3.486 10 O -0.473 6.473 11 C -0.134 4.134 12 C 0.088 3.912 13 H 0.041 0.959 14 C -0.478 4.478 15 H 0.062 0.938 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.029 4.029 23 C -0.130 4.130 24 C -0.141 4.141 25 C -0.152 4.152 26 C -0.142 4.142 27 C -0.070 4.070 28 O 0.143 5.857 29 N -0.316 5.316 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.185 0.815 34 H 0.430 0.570 35 H 0.141 0.859 36 H 0.065 0.935 37 H 0.263 0.737 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.841 3.349 5.833 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.258 6.258 3 C 0.400 3.600 4 O -0.374 6.374 5 C -0.153 4.153 6 C -0.276 4.276 7 C 0.083 3.917 8 N -0.293 5.293 9 C 0.304 3.696 10 O -0.341 6.341 11 C -0.174 4.174 12 C 0.069 3.931 13 H 0.060 0.940 14 C -0.515 4.515 15 H 0.080 0.920 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.030 4.030 23 C -0.148 4.148 24 C -0.159 4.159 25 C -0.171 4.171 26 C -0.160 4.160 27 C -0.088 4.088 28 O 0.071 5.929 29 N -0.021 5.021 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.203 0.797 34 H 0.271 0.729 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.131 1.515 5.677 12.586 hybrid contribution -0.197 0.893 -1.246 1.546 sum -11.327 2.408 4.431 12.399 Atomic orbital electron populations 1.23382 0.75303 1.04214 1.02852 1.86630 1.23894 1.31619 1.83641 1.19518 0.85938 0.81886 0.72706 1.90852 1.65329 1.36008 1.45259 1.21703 0.92464 0.91026 1.10136 1.21611 0.88172 1.00375 1.17401 1.20877 0.89204 0.83467 0.98195 1.43726 1.01939 1.10021 1.73660 1.21928 0.83900 0.89914 0.73890 1.90752 1.85579 1.14332 1.43450 1.22040 0.90698 1.00067 1.04626 1.17647 0.86414 0.91744 0.97338 0.94020 1.20997 1.47958 0.93252 0.89297 0.92012 1.24889 0.94924 0.95005 0.99039 1.69632 1.51001 1.06432 1.25853 0.86648 0.78924 0.79979 0.82626 1.20217 1.21300 1.20201 1.20256 0.96713 0.93333 0.92679 1.20890 0.93405 0.99036 1.01471 1.20810 0.97515 0.94978 1.02576 1.20784 0.97867 0.95901 1.02519 1.21047 0.94377 0.99343 1.01273 1.21340 0.98505 0.93796 0.95176 1.85142 1.21887 1.19409 1.66452 1.74420 0.88910 1.21797 1.16948 0.87581 0.91504 0.91490 0.79749 0.72919 0.84228 0.91626 0.92656 0.87574 0.88032 0.88249 0.88020 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.35 16 2 O -0.34 -4.30 10.57 -40.34 -0.43 -4.72 16 3 C 0.56 7.78 7.99 34.85 0.28 8.06 16 4 O -0.49 -7.16 16.74 -19.20 -0.32 -7.48 16 5 C 0.00 0.05 7.22 -82.63 -0.60 -0.55 16 6 C -0.25 -3.22 11.02 -38.84 -0.43 -3.65 16 7 C 0.24 3.68 7.91 -15.06 -0.12 3.56 16 8 N -0.64 -9.00 5.40 -11.81 -0.06 -9.06 16 9 C 0.51 9.49 7.54 -10.98 -0.08 9.40 16 10 O -0.47 -10.63 13.82 -15.87 -0.22 -10.85 16 11 C -0.13 -2.48 4.07 -27.88 -0.11 -2.59 16 12 C 0.09 1.92 1.97 -92.92 -0.18 1.73 16 13 H 0.04 0.92 7.91 -51.93 -0.41 0.51 16 14 C -0.48 -11.97 7.27 -34.44 -0.25 -12.22 16 15 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 16 C 0.06 1.52 5.12 -17.82 -0.09 1.43 16 17 N -0.89 -21.09 7.99 55.43 0.44 -20.65 16 18 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 C -0.03 -0.62 4.69 -104.62 -0.49 -1.11 16 23 C -0.13 -2.60 9.71 -39.58 -0.38 -2.98 16 24 C -0.14 -2.55 10.05 -39.58 -0.40 -2.95 16 25 C -0.15 -2.70 10.05 -39.59 -0.40 -3.09 16 26 C -0.14 -2.62 10.05 -39.58 -0.40 -3.02 16 27 C -0.07 -1.40 7.45 -39.58 -0.30 -1.70 16 28 O 0.14 2.56 9.60 -4.66 -0.04 2.52 16 29 N -0.32 -5.37 12.11 33.33 0.40 -4.97 16 30 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.19 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.43 4.23 8.82 -40.82 -0.36 3.87 16 35 H 0.14 2.72 4.71 -51.93 -0.24 2.48 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.26 6.17 8.31 -40.82 -0.34 5.83 16 38 H 0.11 2.02 8.06 -52.49 -0.42 1.59 16 39 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.14 2.80 5.18 -52.49 -0.27 2.53 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -29.87 365.32 -7.26 -37.14 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.64 Total: 5.25 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.88 Total: -8.31 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.78 Total: -34.67 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -1.01 Total: -20.53 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.87 -7.26 -37.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460276493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.425 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds