Wall clock time and date at job start Wed Apr 1 2020 03:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34221 * 116.99824 * 2 1 4 4 O 1.20828 * 120.00385 * 0.02562 * 3 2 1 5 5 C 1.50710 * 119.99636 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.46643 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46790 * 180.02562 * 6 5 3 8 8 C 1.36796 * 119.99792 * 264.13249 * 7 6 5 9 9 H 1.08002 * 120.00470 * 135.37664 * 8 7 6 10 10 C 1.39088 * 119.99946 * 315.37512 * 8 7 6 11 11 N 1.31345 * 120.00029 * 169.44907 * 10 8 7 12 12 Si 1.86801 * 119.99889 * 349.44597 * 10 8 7 13 13 H 1.48503 * 109.46727 * 91.54642 * 12 10 8 14 14 H 1.48498 * 109.47207 * 211.54535 * 12 10 8 15 15 H 1.48498 * 109.46973 * 331.54828 * 12 10 8 16 16 C 1.34776 * 120.00152 * 84.40324 * 7 6 5 17 17 O 1.21606 * 119.99908 * 4.70936 * 16 7 6 18 18 C 1.47759 * 119.99986 * 184.70846 * 16 7 6 19 19 C 1.38389 * 119.25298 * 174.12453 * 18 16 7 20 20 C 1.40660 * 118.64620 * 179.97438 * 19 18 16 21 21 C 1.40258 * 122.04683 * 179.97438 * 20 19 18 22 22 C 1.36313 * 119.47774 * 180.02562 * 21 20 19 23 23 C 1.39241 * 120.94248 * 359.97438 * 22 21 20 24 24 C 1.36377 * 121.06733 * 0.02562 * 23 22 21 25 25 C 1.40032 * 119.58992 * 359.97438 * 24 23 22 26 26 C 1.41365 * 121.84492 * 179.97438 * 25 24 23 27 27 O 1.35495 * 119.94377 * 0.04231 * 26 25 24 28 28 N 1.31384 * 120.10921 * 179.76930 * 26 25 24 29 29 H 1.08999 * 109.46889 * 299.99806 * 1 2 3 30 30 H 1.09002 * 109.47063 * 59.99919 * 1 2 3 31 31 H 1.09002 * 109.46892 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46754 * 60.00143 * 5 3 2 33 33 H 1.08995 * 109.46818 * 299.99558 * 5 3 2 34 34 H 1.08994 * 109.47543 * 59.99791 * 6 5 3 35 35 H 1.09000 * 109.46805 * 299.99709 * 6 5 3 36 36 H 0.96995 * 119.99644 * 179.97438 * 11 10 8 37 37 H 1.08006 * 120.67894 * 359.94548 * 19 18 16 38 38 H 1.07997 * 120.25925 * 0.03263 * 21 20 19 39 39 H 1.08000 * 119.52563 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.46989 * 180.02562 * 23 22 21 41 41 H 1.07994 * 120.20649 * 179.97438 * 24 23 22 42 42 H 0.96696 * 113.99519 * 90.00287 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4632 2.8187 -0.0010 8 6 6.1409 2.9745 1.1771 9 1 7.0199 2.3798 1.3772 10 6 5.6979 3.8989 2.1171 11 7 6.2149 3.9069 3.3245 12 14 4.3677 5.1292 1.6625 13 1 3.0361 4.5666 2.0027 14 1 4.5802 6.3898 2.4180 15 1 4.4294 5.4089 0.2054 16 6 6.1412 2.7412 -1.1632 17 8 5.5370 2.6939 -2.2176 18 6 7.6185 2.7137 -1.1564 19 6 8.2966 2.5109 -2.3456 20 6 9.7029 2.4876 -2.3244 21 6 10.4614 2.2870 -3.4870 22 6 11.8221 2.2736 -3.4061 23 6 12.4687 2.4567 -2.1865 24 6 11.7611 2.6542 -1.0375 25 6 10.3616 2.6742 -1.0821 26 6 9.5812 2.8745 0.0795 27 8 10.1865 3.0549 1.2782 28 7 8.2700 2.8915 -0.0023 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9557 0.7808 -0.8909 33 1 3.9564 0.7805 0.8892 34 1 3.6108 3.2356 0.8906 35 1 3.6101 3.2366 -0.8894 36 1 5.9062 4.5518 3.9800 37 1 7.7571 2.3728 -3.2710 38 1 9.9714 2.1443 -4.4387 39 1 12.4070 2.1188 -4.3007 40 1 13.5479 2.4421 -2.1499 41 1 12.2768 2.7944 -0.0991 42 1 10.3785 3.9794 1.4866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471249279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:17 Heat of formation + Delta-G solvation = -94.704301 kcal Electronic energy + Delta-G solvation = -29853.667162 eV Core-core repulsion = 25571.784895 eV Total energy + Delta-G solvation = -4281.882266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.05898 -41.64338 -40.57185 -38.73410 -37.85251 -37.41158 -37.01134 -34.16746 -33.22375 -32.81812 -31.90412 -30.37508 -28.79520 -26.96316 -26.35986 -24.86636 -24.54280 -23.00335 -22.06380 -21.46196 -20.09789 -19.03437 -18.99728 -18.58074 -18.28900 -17.92763 -17.72930 -17.19356 -16.87048 -16.55132 -16.33717 -15.97786 -15.71800 -15.39312 -15.09139 -14.80430 -14.63286 -14.47980 -14.43463 -14.21615 -14.01758 -13.89436 -13.57395 -13.11474 -12.99705 -12.90636 -12.75202 -12.65852 -12.48759 -12.09743 -12.02154 -11.90394 -11.79674 -11.70498 -11.25065 -11.00309 -10.95624 -10.16877 -10.02180 -9.50100 -8.92257 -8.33896 -6.02773 -0.74652 -0.17498 0.89021 1.02454 1.15836 1.25085 1.33969 1.46756 1.63231 2.17164 2.37839 2.45349 2.69660 2.98174 3.17864 3.59228 3.66618 3.69113 3.78151 3.86168 3.97038 4.03725 4.17352 4.27547 4.29016 4.33342 4.34564 4.40157 4.55398 4.57387 4.65736 4.75635 4.77190 4.82576 5.07031 5.10982 5.22742 5.42798 5.48553 5.49623 5.55387 5.95245 6.12249 6.49729 6.58752 6.67898 6.89466 7.13350 7.36649 7.63714 8.74668 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.013261 B = 0.003537 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.889412 B = 7914.317106 C = 9253.091533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.476 3.524 4 O -0.539 6.539 5 C -0.115 4.115 6 C 0.108 3.892 7 N -0.453 5.453 8 C -0.297 4.297 9 H 0.123 0.877 10 C 0.035 3.965 11 N -0.894 5.894 12 Si 0.905 3.095 13 H -0.268 1.268 14 H -0.284 1.284 15 H -0.278 1.278 16 C 0.520 3.480 17 O -0.604 6.604 18 C 0.071 3.929 19 C -0.106 4.106 20 C -0.040 4.040 21 C -0.112 4.112 22 C -0.091 4.091 23 C -0.107 4.107 24 C -0.094 4.094 25 C -0.121 4.121 26 C 0.325 3.675 27 O -0.480 6.480 28 N -0.464 5.464 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.139 0.861 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.274 0.726 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.149 0.851 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.485 -5.735 -10.337 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.320 3.680 4 O -0.430 6.430 5 C -0.154 4.154 6 C -0.015 4.015 7 N -0.171 5.171 8 C -0.425 4.425 9 H 0.140 0.860 10 C -0.168 4.168 11 N -0.533 5.533 12 Si 0.733 3.267 13 H -0.195 1.195 14 H -0.211 1.211 15 H -0.203 1.203 16 C 0.311 3.689 17 O -0.490 6.490 18 C -0.054 4.054 19 C -0.128 4.128 20 C -0.045 4.045 21 C -0.130 4.130 22 C -0.110 4.110 23 C -0.125 4.125 24 C -0.113 4.113 25 C -0.124 4.124 26 C 0.130 3.870 27 O -0.289 6.289 28 N -0.184 5.184 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.157 0.843 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.174 0.826 38 H 0.172 0.828 39 H 0.184 0.816 40 H 0.181 0.819 41 H 0.167 0.833 42 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 7.293 -5.848 -9.865 13.591 hybrid contribution -0.878 1.437 -0.056 1.685 sum 6.415 -4.411 -9.922 12.612 Atomic orbital electron populations 1.23625 0.74479 1.06026 1.02596 1.86507 1.25346 1.31986 1.83622 1.23667 0.91833 0.81456 0.71018 1.90641 1.67847 1.37452 1.47015 1.21600 0.87403 0.99029 1.07334 1.21467 0.82444 0.95699 1.01887 1.43761 1.04223 1.62516 1.06626 1.19649 1.11063 1.20772 0.91050 0.85987 1.25721 0.98326 0.97463 0.95253 1.69669 1.43549 1.36418 1.03653 0.86527 0.81004 0.80647 0.78525 1.19470 1.21066 1.20341 1.18443 0.86919 0.80297 0.83236 1.90622 1.69773 1.57265 1.31316 1.20435 0.93428 1.02461 0.89097 1.22257 0.93852 0.97996 0.98661 1.18260 0.92370 0.99435 0.94424 1.21290 0.94938 0.99961 0.96792 1.21456 0.93934 0.96126 0.99451 1.21434 1.02070 0.97366 0.91590 1.21194 0.90769 0.98434 1.00925 1.19318 0.96401 1.04319 0.92400 1.19861 0.86848 0.95045 0.85268 1.84650 1.77195 1.33602 1.33449 1.68007 1.10127 1.12706 1.27591 0.92064 0.91821 0.84343 0.86379 0.85946 0.91511 0.91404 0.91536 0.82648 0.82755 0.81627 0.81891 0.83311 0.72439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -10.75 10.57 -51.33 -0.54 -11.29 16 3 C 0.48 17.44 7.96 71.24 0.57 18.01 16 4 O -0.54 -22.66 15.73 21.96 0.35 -22.32 16 5 C -0.12 -4.43 6.10 29.85 0.18 -4.25 16 6 C 0.11 5.05 3.11 86.38 0.27 5.32 16 7 N -0.45 -22.82 2.12 -638.91 -1.35 -24.18 16 8 C -0.30 -16.11 8.10 84.12 0.68 -15.42 16 9 H 0.12 7.15 5.95 -2.91 -0.02 7.13 16 10 C 0.04 1.95 5.41 84.97 0.46 2.41 16 11 N -0.89 -51.08 13.95 21.69 0.30 -50.78 16 12 Si 0.90 45.50 24.75 68.60 1.70 47.20 16 13 H -0.27 -13.27 6.70 99.48 0.67 -12.60 16 14 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 15 H -0.28 -14.50 7.05 99.48 0.70 -13.80 16 16 C 0.52 25.50 7.56 86.76 0.66 26.16 16 17 O -0.60 -30.07 15.93 -4.05 -0.06 -30.14 16 18 C 0.07 3.14 6.65 41.41 0.28 3.42 16 19 C -0.11 -3.79 9.41 22.90 0.22 -3.58 16 20 C -0.04 -1.19 5.74 -21.30 -0.12 -1.31 16 21 C -0.11 -2.28 9.81 22.31 0.22 -2.06 16 22 C -0.09 -1.34 9.95 22.06 0.22 -1.12 16 23 C -0.11 -1.63 9.95 22.08 0.22 -1.41 16 24 C -0.09 -2.02 9.58 22.27 0.21 -1.81 16 25 C -0.12 -3.65 5.76 -21.18 -0.12 -3.77 16 26 C 0.32 12.14 7.80 85.53 0.67 12.80 16 27 O -0.48 -16.13 12.82 -87.96 -1.13 -17.25 16 28 N -0.46 -21.08 6.20 -297.70 -1.84 -22.93 16 29 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 31 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.12 4.28 8.14 -2.39 -0.02 4.26 16 33 H 0.12 4.52 8.14 -2.39 -0.02 4.50 16 34 H 0.07 3.31 3.55 -2.39 -0.01 3.30 16 35 H 0.07 3.28 7.49 -2.39 -0.02 3.26 16 36 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.16 5.11 7.61 -2.91 -0.02 5.08 16 38 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 41 H 0.15 2.70 7.65 -2.91 -0.02 2.68 16 42 H 0.42 10.21 9.06 -74.06 -0.67 9.54 16 Total: -1.00 -76.63 360.83 3.59 -73.04 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.38 Total: 23.51 kcal Atomic # 6 Polarization: 29.33 SS G_CDS: 5.80 Total: 35.13 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -2.89 Total: -97.88 kcal Atomic # 8 Polarization: -79.61 SS G_CDS: -1.39 Total: -81.00 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.70 Total: 47.20 kcal Total: -76.63 3.59 -73.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471249279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.664 kcal (2) G-P(sol) polarization free energy of solvation -76.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds