Wall clock time and date at job start Wed Apr 1 2020 03:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34776 * 117.00027 * 2 1 4 4 O 1.21539 * 120.00132 * 0.02562 * 3 2 1 5 5 C 1.47272 * 120.00482 * 180.02562 * 3 2 1 6 6 N 1.36111 * 126.45249 * 359.97438 * 5 3 2 7 7 C 1.29916 * 108.46846 * 180.02562 * 6 5 3 8 8 O 1.34061 * 109.26516 * 359.97438 * 7 6 5 9 9 C 1.34231 * 108.24251 * 0.02562 * 8 7 6 10 10 C 1.50693 * 126.53243 * 179.97438 * 9 8 7 11 11 N 1.46504 * 109.46966 * 270.02141 * 10 9 8 12 12 C 1.34780 * 119.99815 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99903 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99685 * 180.02562 * 12 11 10 15 15 H 1.09004 * 109.47352 * 59.99980 * 14 12 11 16 16 C 1.50703 * 109.46832 * 299.99802 * 14 12 11 17 17 H 1.07993 * 120.00512 * 325.09971 * 16 14 12 18 18 C 1.37877 * 119.99426 * 145.10287 * 16 14 12 19 19 N 1.31519 * 119.99993 * 184.98247 * 18 16 14 20 20 Si 1.86801 * 120.00373 * 4.98188 * 18 16 14 21 21 H 1.48497 * 109.46945 * 84.67028 * 20 18 16 22 22 H 1.48503 * 109.47128 * 204.67331 * 20 18 16 23 23 H 1.48494 * 109.47084 * 324.66963 * 20 18 16 24 24 C 1.50700 * 109.46864 * 179.97438 * 14 12 11 25 25 C 1.38242 * 119.99786 * 65.02467 * 24 14 12 26 26 C 1.38236 * 119.99512 * 179.81079 * 25 24 14 27 27 C 1.38229 * 120.00302 * 0.39322 * 26 25 24 28 28 C 1.38231 * 119.99944 * 359.85325 * 27 26 25 29 29 C 1.38230 * 120.00061 * 245.29253 * 24 14 12 30 30 H 1.09001 * 109.46419 * 299.99914 * 1 2 3 31 31 H 1.08995 * 109.47021 * 59.99578 * 1 2 3 32 32 H 1.08993 * 109.46891 * 180.02562 * 1 2 3 33 33 H 1.08006 * 125.36814 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47437 * 30.01896 * 10 9 8 35 35 H 1.09004 * 109.47355 * 150.02053 * 10 9 8 36 36 H 0.96993 * 119.99965 * 0.02562 * 11 10 9 37 37 H 0.96993 * 120.00230 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.00102 * 359.97438 * 25 24 14 39 39 H 1.08009 * 119.99385 * 180.22688 * 26 25 24 40 40 H 1.07999 * 119.99957 * 179.83720 * 27 26 25 41 41 H 1.08007 * 119.99954 * 179.97438 * 28 27 26 42 42 H 1.07993 * 120.00083 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2202 0.0005 5 6 3.5346 1.2781 -0.0006 6 7 4.3996 0.2271 -0.0006 7 6 5.6126 0.6925 -0.0007 8 8 5.5723 2.0325 -0.0012 9 6 4.2854 2.4141 -0.0009 10 6 3.7696 3.8301 -0.0008 11 7 3.6033 4.2890 1.3806 12 6 3.1504 5.5343 1.6270 13 8 2.8811 6.2750 0.7052 14 6 2.9798 6.0066 3.0478 15 1 3.9408 5.9695 3.5609 16 6 1.9958 5.1138 3.7591 17 1 1.1573 4.6975 3.2208 18 6 2.1661 4.8288 5.0973 19 7 1.3655 3.9731 5.6945 20 14 3.5339 5.6578 6.0623 21 1 3.0675 6.9832 6.5430 22 1 3.9027 4.8112 7.2253 23 1 4.7190 5.8381 5.1858 24 6 2.4651 7.4229 3.0480 25 6 1.2087 7.7018 2.5433 26 6 0.7351 9.0005 2.5471 27 6 1.5210 10.0214 3.0480 28 6 2.7793 9.7433 3.5480 29 6 3.2516 8.4440 3.5477 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 6.5117 0.0941 -0.0011 34 1 4.4813 4.4761 -0.5150 35 1 2.8088 3.8669 -0.5141 36 1 3.8197 3.6970 2.1177 37 1 1.4855 3.7723 6.6358 38 1 0.5962 6.9047 2.1485 39 1 -0.2480 9.2179 2.1561 40 1 1.1519 11.0364 3.0485 41 1 3.3935 10.5410 3.9390 42 1 4.2346 8.2267 3.9384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471486990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:36 Heat of formation + Delta-G solvation = -63.254728 kcal Electronic energy + Delta-G solvation = -29858.501415 eV Core-core repulsion = 25577.982905 eV Total energy + Delta-G solvation = -4280.518510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.72140 -40.16217 -39.37351 -37.94224 -36.49190 -35.11546 -34.58187 -33.66322 -31.54969 -30.98943 -30.12053 -28.43072 -27.76338 -26.22166 -24.21659 -23.50761 -22.32251 -21.84590 -21.10460 -20.76875 -19.45283 -18.49260 -17.19254 -17.15491 -17.11408 -16.69664 -16.15933 -16.07483 -15.88995 -15.39543 -15.08318 -14.55551 -14.38367 -14.11127 -13.81058 -13.67530 -13.30250 -13.14655 -12.90325 -12.70211 -12.62490 -12.43116 -12.10711 -12.03953 -11.86330 -11.61256 -11.17114 -11.01642 -11.00072 -10.75694 -10.66599 -10.46246 -10.25197 -9.93593 -9.58167 -9.44930 -8.98694 -8.70226 -8.58443 -8.12506 -7.81085 -6.30485 -4.34734 0.67982 1.74260 2.14798 2.18810 2.23407 2.62695 2.94571 3.13043 3.21565 3.26290 3.50911 3.80620 3.89866 4.20890 4.31255 4.64124 4.69501 5.00144 5.03054 5.11496 5.12829 5.24344 5.52789 5.55673 5.59743 5.62013 5.72200 5.75023 5.81113 5.95577 6.04850 6.28281 6.31505 6.32907 6.46032 6.74397 6.84779 6.88762 7.15977 7.17727 7.26570 7.26647 7.59749 7.73280 7.80513 8.08780 8.23336 8.71473 9.00096 9.26825 10.80414 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.003602 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.865936 B = 7771.802801 C = 8019.027718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.341 6.341 3 C 0.547 3.453 4 O -0.475 6.475 5 C -0.036 4.036 6 N -0.449 5.449 7 C 0.183 3.817 8 O -0.188 6.188 9 C 0.043 3.957 10 C 0.198 3.802 11 N -0.722 5.722 12 C 0.543 3.457 13 O -0.555 6.555 14 C 0.021 3.979 15 H 0.074 0.926 16 C -0.511 4.511 17 H 0.084 0.916 18 C 0.085 3.915 19 N -0.881 5.881 20 Si 0.865 3.135 21 H -0.266 1.266 22 H -0.285 1.285 23 H -0.262 1.262 24 C -0.028 4.028 25 C -0.072 4.072 26 C -0.129 4.129 27 C -0.143 4.143 28 C -0.129 4.129 29 C -0.137 4.137 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.260 0.740 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.408 0.592 37 H 0.269 0.731 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.551 -4.791 -9.649 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.257 6.257 3 C 0.390 3.610 4 O -0.361 6.361 5 C -0.155 4.155 6 N -0.177 5.177 7 C -0.046 4.046 8 O -0.074 6.074 9 C -0.014 4.014 10 C 0.074 3.926 11 N -0.377 5.377 12 C 0.332 3.668 13 O -0.433 6.433 14 C 0.000 4.000 15 H 0.092 0.908 16 C -0.548 4.548 17 H 0.102 0.898 18 C -0.120 4.120 19 N -0.517 5.517 20 Si 0.692 3.308 21 H -0.191 1.191 22 H -0.211 1.211 23 H -0.187 1.187 24 C -0.029 4.029 25 C -0.090 4.090 26 C -0.147 4.147 27 C -0.161 4.161 28 C -0.147 4.147 29 C -0.155 4.155 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.275 0.725 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.243 0.757 37 H 0.079 0.921 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.893 -4.695 -10.127 12.622 hybrid contribution 0.865 0.477 1.130 1.501 sum 6.758 -4.217 -8.997 12.017 Atomic orbital electron populations 1.23360 0.75542 1.03820 1.03104 1.86610 1.23611 1.31487 1.83959 1.19324 0.85998 0.82173 0.73548 1.90987 1.65137 1.35515 1.44486 1.20332 0.92700 0.89168 1.13328 1.70889 0.99886 1.31008 1.15938 1.28197 0.98524 0.77958 0.99941 1.84445 1.27916 1.26350 1.68644 1.23789 0.80321 0.97788 0.99484 1.19824 1.01967 0.83231 0.87550 1.45802 1.69543 1.16382 1.05937 1.21175 0.73567 0.79675 0.92359 1.90610 1.50590 1.55064 1.47043 1.18565 0.99727 0.91162 0.90572 0.90832 1.20554 1.11143 1.28020 0.95069 0.89766 1.24984 0.95886 0.93866 0.97249 1.69865 1.37914 1.32147 1.11742 0.87035 0.82950 0.80700 0.80118 1.19068 1.21133 1.18729 1.20046 0.93982 0.94680 0.94203 1.20864 0.95360 0.95718 0.97051 1.21036 0.99317 0.93385 1.00963 1.20862 0.95157 0.98341 1.01730 1.20878 0.96326 0.96138 1.01354 1.20964 0.99358 0.92893 1.02269 0.91137 0.91759 0.87921 0.72464 0.89476 0.86609 0.75715 0.92129 0.86425 0.87100 0.87326 0.87267 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.57 101.05 1.07 1.47 16 2 O -0.34 -5.09 10.58 -40.70 -0.43 -5.52 16 3 C 0.55 9.03 7.96 34.40 0.27 9.31 16 4 O -0.48 -8.86 14.60 -19.30 -0.28 -9.15 16 5 C -0.04 -0.55 7.04 -83.04 -0.58 -1.13 16 6 N -0.45 -5.97 11.36 -11.50 -0.13 -6.10 16 7 C 0.18 1.72 13.19 51.95 0.69 2.40 16 8 O -0.19 -2.16 10.72 6.55 0.07 -2.09 16 9 C 0.04 0.60 6.81 -35.05 -0.24 0.37 16 10 C 0.20 3.09 5.66 -5.19 -0.03 3.06 16 11 N -0.72 -13.36 5.45 -61.47 -0.33 -13.70 16 12 C 0.54 11.73 7.04 -10.98 -0.08 11.65 16 13 O -0.56 -12.93 15.37 5.56 0.09 -12.85 16 14 C 0.02 0.48 1.89 -94.07 -0.18 0.30 16 15 H 0.07 1.63 4.89 -51.93 -0.25 1.37 16 16 C -0.51 -13.20 8.07 -34.44 -0.28 -13.48 16 17 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 18 C 0.09 2.26 5.47 -17.82 -0.10 2.16 16 19 N -0.88 -25.02 13.96 55.43 0.77 -24.25 16 20 Si 0.87 19.92 27.18 -169.99 -4.62 15.30 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.26 -5.57 6.06 56.52 0.34 -5.23 16 24 C -0.03 -0.63 4.09 -104.62 -0.43 -1.06 16 25 C -0.07 -1.58 8.26 -39.58 -0.33 -1.91 16 26 C -0.13 -2.45 10.05 -39.59 -0.40 -2.85 16 27 C -0.14 -2.51 10.05 -39.59 -0.40 -2.91 16 28 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 29 C -0.14 -2.78 9.46 -39.58 -0.37 -3.15 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.26 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.12 1.97 6.48 -51.93 -0.34 1.63 16 36 H 0.41 7.43 8.35 -40.82 -0.34 7.09 16 37 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.12 2.70 7.93 -52.49 -0.42 2.28 16 39 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 42 H 0.11 2.02 7.95 -52.49 -0.42 1.60 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -33.65 371.88 -5.81 -39.45 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -4.76 Total: 11.78 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.78 Total: 1.52 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.31 Total: -44.05 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.56 Total: -29.60 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.62 Total: 15.30 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.65 -5.81 -39.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471486990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.801 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds