Wall clock time and date at job start Wed Apr 1 2020 03:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34776 * 117.00027 * 2 1 4 4 O 1.21539 * 120.00132 * 0.02562 * 3 2 1 5 5 C 1.47272 * 120.00482 * 180.02562 * 3 2 1 6 6 N 1.36111 * 126.45249 * 359.97438 * 5 3 2 7 7 C 1.29916 * 108.46846 * 180.02562 * 6 5 3 8 8 O 1.34061 * 109.26516 * 359.97438 * 7 6 5 9 9 C 1.34231 * 108.24251 * 0.02562 * 8 7 6 10 10 C 1.50693 * 126.53243 * 179.97438 * 9 8 7 11 11 N 1.46504 * 109.46966 * 270.02141 * 10 9 8 12 12 C 1.34780 * 119.99815 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99903 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99685 * 180.02562 * 12 11 10 15 15 H 1.09004 * 109.47352 * 59.99980 * 14 12 11 16 16 C 1.50703 * 109.46832 * 299.99802 * 14 12 11 17 17 H 1.07993 * 120.00512 * 325.09971 * 16 14 12 18 18 C 1.37877 * 119.99426 * 145.10287 * 16 14 12 19 19 N 1.31519 * 119.99993 * 184.98247 * 18 16 14 20 20 Si 1.86801 * 120.00373 * 4.98188 * 18 16 14 21 21 H 1.48497 * 109.46945 * 84.67028 * 20 18 16 22 22 H 1.48503 * 109.47128 * 204.67331 * 20 18 16 23 23 H 1.48494 * 109.47084 * 324.66963 * 20 18 16 24 24 C 1.50700 * 109.46864 * 179.97438 * 14 12 11 25 25 C 1.38242 * 119.99786 * 65.02467 * 24 14 12 26 26 C 1.38236 * 119.99512 * 179.81079 * 25 24 14 27 27 C 1.38229 * 120.00302 * 0.39322 * 26 25 24 28 28 C 1.38231 * 119.99944 * 359.85325 * 27 26 25 29 29 C 1.38230 * 120.00061 * 245.29253 * 24 14 12 30 30 H 1.09001 * 109.46419 * 299.99914 * 1 2 3 31 31 H 1.08995 * 109.47021 * 59.99578 * 1 2 3 32 32 H 1.08993 * 109.46891 * 180.02562 * 1 2 3 33 33 H 1.08006 * 125.36814 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47437 * 30.01896 * 10 9 8 35 35 H 1.09004 * 109.47355 * 150.02053 * 10 9 8 36 36 H 0.96993 * 119.99965 * 0.02562 * 11 10 9 37 37 H 0.96993 * 120.00230 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.00102 * 359.97438 * 25 24 14 39 39 H 1.08009 * 119.99385 * 180.22688 * 26 25 24 40 40 H 1.07999 * 119.99957 * 179.83720 * 27 26 25 41 41 H 1.08007 * 119.99954 * 179.97438 * 28 27 26 42 42 H 1.07993 * 120.00083 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2202 0.0005 5 6 3.5346 1.2781 -0.0006 6 7 4.3996 0.2271 -0.0006 7 6 5.6126 0.6925 -0.0007 8 8 5.5723 2.0325 -0.0012 9 6 4.2854 2.4141 -0.0009 10 6 3.7696 3.8301 -0.0008 11 7 3.6033 4.2890 1.3806 12 6 3.1504 5.5343 1.6270 13 8 2.8811 6.2750 0.7052 14 6 2.9798 6.0066 3.0478 15 1 3.9408 5.9695 3.5609 16 6 1.9958 5.1138 3.7591 17 1 1.1573 4.6975 3.2208 18 6 2.1661 4.8288 5.0973 19 7 1.3655 3.9731 5.6945 20 14 3.5339 5.6578 6.0623 21 1 3.0675 6.9832 6.5430 22 1 3.9027 4.8112 7.2253 23 1 4.7190 5.8381 5.1858 24 6 2.4651 7.4229 3.0480 25 6 1.2087 7.7018 2.5433 26 6 0.7351 9.0005 2.5471 27 6 1.5210 10.0214 3.0480 28 6 2.7793 9.7433 3.5480 29 6 3.2516 8.4440 3.5477 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 6.5117 0.0941 -0.0011 34 1 4.4813 4.4761 -0.5150 35 1 2.8088 3.8669 -0.5141 36 1 3.8197 3.6970 2.1177 37 1 1.4855 3.7723 6.6358 38 1 0.5962 6.9047 2.1485 39 1 -0.2480 9.2179 2.1561 40 1 1.1519 11.0364 3.0485 41 1 3.3935 10.5410 3.9390 42 1 4.2346 8.2267 3.9384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471486990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:35 Heat of formation + Delta-G solvation = -88.671481 kcal Electronic energy + Delta-G solvation = -29859.603568 eV Core-core repulsion = 25577.982905 eV Total energy + Delta-G solvation = -4281.620664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.70668 -41.41549 -41.02304 -39.47628 -37.75326 -36.13016 -36.05215 -35.54695 -33.39645 -32.22037 -31.62500 -29.79672 -29.10617 -27.53712 -25.53837 -25.09814 -23.44525 -23.32153 -22.58431 -21.94263 -21.08006 -19.60003 -19.14180 -18.46925 -18.28161 -18.06386 -17.66109 -17.31186 -17.05069 -16.71206 -16.51475 -16.15551 -15.86624 -15.60067 -15.24446 -14.89895 -14.80203 -14.47652 -14.39456 -14.27451 -14.13192 -13.93936 -13.65842 -13.44809 -13.12203 -12.98673 -12.72583 -12.63870 -12.10822 -12.03972 -11.98263 -11.92543 -11.88575 -11.64540 -11.43570 -10.98508 -10.74820 -10.29877 -10.13238 -9.64107 -9.37779 -8.36122 -6.45037 -0.46683 0.64238 0.70338 0.79106 1.13443 1.30231 1.38702 1.42743 1.57855 1.75619 1.79638 2.28174 2.43298 2.94554 2.95818 3.15005 3.19053 3.60639 3.94039 4.04110 4.10530 4.20552 4.21138 4.25049 4.25945 4.33652 4.39569 4.48626 4.54894 4.58641 4.63355 4.81891 4.90351 4.98158 5.13701 5.17919 5.31325 5.33524 5.40309 5.69876 5.74318 5.94085 6.17600 6.18661 6.29761 6.48629 6.53702 6.58406 7.19502 7.30715 8.78640 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.003602 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.865936 B = 7771.802801 C = 8019.027718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.346 6.346 3 C 0.541 3.459 4 O -0.511 6.511 5 C -0.051 4.051 6 N -0.484 5.484 7 C 0.222 3.778 8 O -0.181 6.181 9 C 0.038 3.962 10 C 0.202 3.798 11 N -0.715 5.715 12 C 0.540 3.460 13 O -0.576 6.576 14 C 0.024 3.976 15 H 0.084 0.916 16 C -0.501 4.501 17 H 0.032 0.968 18 C 0.034 3.966 19 N -0.931 5.931 20 Si 0.924 3.076 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.230 1.230 24 C -0.056 4.056 25 C -0.104 4.104 26 C -0.134 4.134 27 C -0.135 4.135 28 C -0.124 4.124 29 C -0.150 4.150 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.320 0.680 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.408 0.592 37 H 0.270 0.730 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.655 -3.476 -9.486 13.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.261 6.261 3 C 0.385 3.615 4 O -0.400 6.400 5 C -0.169 4.169 6 N -0.212 5.212 7 C -0.007 4.007 8 O -0.067 6.067 9 C -0.019 4.019 10 C 0.079 3.921 11 N -0.368 5.368 12 C 0.329 3.671 13 O -0.456 6.456 14 C 0.003 3.997 15 H 0.102 0.898 16 C -0.539 4.539 17 H 0.050 0.950 18 C -0.166 4.166 19 N -0.569 5.569 20 Si 0.747 3.253 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.154 1.154 24 C -0.057 4.057 25 C -0.122 4.122 26 C -0.152 4.152 27 C -0.153 4.153 28 C -0.141 4.141 29 C -0.168 4.168 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.159 0.841 33 H 0.335 0.665 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.243 0.757 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.151 0.849 40 H 0.168 0.832 41 H 0.168 0.832 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.005 -3.421 -9.994 13.880 hybrid contribution -0.156 -0.008 0.975 0.987 sum 8.849 -3.429 -9.019 13.092 Atomic orbital electron populations 1.23650 0.73927 1.06166 1.02622 1.86606 1.25308 1.30758 1.83459 1.19750 0.86930 0.82097 0.72679 1.90968 1.66131 1.36551 1.46312 1.20306 0.92250 0.90327 1.14002 1.70895 1.01034 1.30800 1.18434 1.29600 0.99085 0.77096 0.94894 1.84470 1.26167 1.27528 1.68565 1.23262 0.81336 0.96587 1.00740 1.19727 1.01824 0.84922 0.85670 1.45731 1.68277 1.15347 1.07420 1.21015 0.73756 0.80509 0.91851 1.90580 1.51694 1.55971 1.47385 1.18488 0.98964 0.91382 0.90867 0.89793 1.20433 1.10178 1.28159 0.95100 0.94963 1.25763 0.98480 0.94291 0.98087 1.70011 1.40417 1.34280 1.12169 0.86080 0.80981 0.79269 0.78935 1.19054 1.20874 1.15355 1.20053 0.94672 0.94852 0.96164 1.20815 0.95746 0.96571 0.99102 1.21342 1.00641 0.92502 1.00673 1.21350 0.94646 0.99688 0.99631 1.21377 0.96760 0.96143 0.99860 1.21247 0.99939 0.93464 1.02193 0.92812 0.91110 0.84124 0.66548 0.87525 0.88566 0.75686 0.92066 0.89682 0.84943 0.83172 0.83209 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.57 113.37 1.20 1.90 16 2 O -0.35 -10.73 10.58 -56.87 -0.60 -11.34 16 3 C 0.54 18.92 7.96 70.20 0.56 19.48 16 4 O -0.51 -20.69 14.60 19.71 0.29 -20.40 16 5 C -0.05 -1.56 7.04 40.38 0.28 -1.27 16 6 N -0.48 -12.21 11.36 -305.20 -3.47 -15.68 16 7 C 0.22 3.43 13.19 130.53 1.72 5.15 16 8 O -0.18 -3.74 10.72 0.53 0.01 -3.74 16 9 C 0.04 1.07 6.81 25.20 0.17 1.24 16 10 C 0.20 6.51 5.66 85.63 0.49 6.99 16 11 N -0.72 -27.47 5.45 -466.78 -2.54 -30.01 16 12 C 0.54 24.24 7.04 87.66 0.62 24.86 16 13 O -0.58 -27.92 15.37 -3.03 -0.05 -27.97 16 14 C 0.02 1.13 1.89 -13.03 -0.02 1.11 16 15 H 0.08 3.65 4.89 -2.39 -0.01 3.64 16 16 C -0.50 -27.38 8.07 25.60 0.21 -27.18 16 17 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 18 C 0.03 1.86 5.47 84.65 0.46 2.32 16 19 N -0.93 -55.29 13.96 21.45 0.30 -54.99 16 20 Si 0.92 40.75 27.18 68.60 1.86 42.62 16 21 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.23 -8.87 6.06 99.48 0.60 -8.27 16 24 C -0.06 -2.55 4.09 -19.87 -0.08 -2.63 16 25 C -0.10 -4.74 8.26 22.27 0.18 -4.55 16 26 C -0.13 -4.97 10.05 22.27 0.22 -4.74 16 27 C -0.14 -4.28 10.05 22.27 0.22 -4.06 16 28 C -0.12 -3.99 10.05 22.27 0.22 -3.76 16 29 C -0.15 -5.78 9.46 22.27 0.21 -5.57 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.32 0.36 8.06 -2.91 -0.02 0.34 16 34 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.10 3.52 6.48 -2.39 -0.02 3.51 16 36 H 0.41 15.42 8.35 -92.71 -0.77 14.65 16 37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.08 4.29 7.93 -2.91 -0.02 4.26 16 39 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 40 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 41 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 42 H 0.12 4.26 7.95 -2.91 -0.02 4.23 16 Total: -1.00 -79.46 371.88 2.67 -76.79 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.20 Total: 35.43 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 6.67 Total: 9.28 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -5.71 Total: -100.68 kcal Atomic # 8 Polarization: -63.09 SS G_CDS: -0.35 Total: -63.45 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.86 Total: 42.62 kcal Total: -79.46 2.67 -76.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471486990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.880 kcal (2) G-P(sol) polarization free energy of solvation -79.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds