Wall clock time and date at job start Wed Apr 1 2020 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34775 * 116.99879 * 2 1 4 4 O 1.21528 * 120.00400 * 359.97438 * 3 2 1 5 5 C 1.47276 * 119.99857 * 180.02562 * 3 2 1 6 6 N 1.36104 * 126.46205 * 0.17344 * 5 3 2 7 7 C 1.29917 * 108.47691 * 180.27499 * 6 5 3 8 8 O 1.34061 * 109.25991 * 359.73383 * 7 6 5 9 9 C 1.34234 * 108.24146 * 0.02562 * 8 7 6 10 10 C 1.50695 * 126.53028 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47000 * 270.02113 * 10 9 8 12 12 C 1.34777 * 120.00414 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99283 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00190 * 180.26869 * 12 11 10 15 15 H 1.08997 * 109.47248 * 321.77569 * 14 12 11 16 16 C 1.50703 * 109.46609 * 81.77183 * 14 12 11 17 17 H 1.07997 * 119.99884 * 54.32117 * 16 14 12 18 18 C 1.37878 * 120.00237 * 234.30928 * 16 14 12 19 19 N 1.31510 * 120.00139 * 172.34374 * 18 16 14 20 20 Si 1.86798 * 119.99915 * 352.35017 * 18 16 14 21 21 H 1.48503 * 109.46901 * 83.76735 * 20 18 16 22 22 H 1.48495 * 109.47463 * 203.76949 * 20 18 16 23 23 H 1.48502 * 109.47157 * 323.77275 * 20 18 16 24 24 C 1.50697 * 109.47253 * 201.77304 * 14 12 11 25 25 C 1.38237 * 119.99680 * 292.52605 * 24 14 12 26 26 C 1.38235 * 119.99640 * 179.78748 * 25 24 14 27 27 C 1.38234 * 120.00051 * 0.44033 * 26 25 24 28 28 C 1.38228 * 120.00059 * 359.81565 * 27 26 25 29 29 C 1.38227 * 120.00133 * 112.79812 * 24 14 12 30 30 H 1.08999 * 109.47359 * 59.99982 * 1 2 3 31 31 H 1.09002 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46976 * 299.99877 * 1 2 3 33 33 H 1.08004 * 125.37267 * 179.70471 * 7 6 5 34 34 H 1.08993 * 109.47773 * 150.02009 * 10 9 8 35 35 H 1.09004 * 109.47135 * 30.01559 * 10 9 8 36 36 H 0.97007 * 119.99725 * 359.97438 * 11 10 9 37 37 H 0.97003 * 119.99960 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.00222 * 0.02562 * 25 24 14 39 39 H 1.08005 * 120.00161 * 180.27362 * 26 25 24 40 40 H 1.08008 * 120.00058 * 179.83107 * 27 26 25 41 41 H 1.07999 * 120.00424 * 180.02562 * 28 27 26 42 42 H 1.08001 * 119.99916 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5345 1.2779 -0.0006 6 7 4.3996 0.2272 -0.0044 7 6 5.6126 0.6924 0.0023 8 8 5.5722 2.0324 0.0047 9 6 4.2853 2.4140 -0.0002 10 6 3.7696 3.8300 -0.0002 11 7 3.5971 4.2869 1.3810 12 6 3.1431 5.5318 1.6273 13 8 2.8779 6.2739 0.7054 14 6 2.9715 6.0039 3.0481 15 1 2.5936 5.1848 3.6600 16 6 4.3011 6.4629 3.5889 17 1 4.8727 7.2081 3.0557 18 6 4.7878 5.9317 4.7645 19 7 6.0095 6.2169 5.1588 20 14 3.7117 4.8069 5.7971 21 1 3.7970 3.4207 5.2713 22 1 4.1790 4.8314 7.2064 23 1 2.3036 5.2742 5.7343 24 6 1.9928 7.1493 3.0821 25 6 2.3263 8.3606 2.5057 26 6 1.4268 9.4100 2.5330 27 6 0.1974 9.2508 3.1448 28 6 -0.1339 8.0411 3.7259 29 6 0.7639 6.9904 3.6947 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 6.5117 0.0940 0.0059 34 1 2.8110 3.8676 -0.5177 35 1 4.4835 4.4767 -0.5104 36 1 3.8096 3.6934 2.1183 37 1 6.3520 5.8429 5.9857 38 1 3.2880 8.4860 2.0306 39 1 1.6855 10.3551 2.0788 40 1 -0.5043 10.0715 3.1686 41 1 -1.0945 7.9165 4.2035 42 1 0.5049 6.0452 4.1485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471486993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:40 Heat of formation + Delta-G solvation = -65.017776 kcal Electronic energy + Delta-G solvation = -29767.356854 eV Core-core repulsion = 25486.761892 eV Total energy + Delta-G solvation = -4280.594962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.76456 -40.35901 -39.36372 -37.95019 -36.68131 -35.15963 -34.61704 -33.65181 -31.61327 -31.04343 -30.12844 -28.53957 -27.85371 -26.33322 -24.30227 -23.53375 -22.37586 -21.84726 -21.13715 -20.84530 -19.50566 -18.59713 -17.34497 -17.21930 -17.15853 -16.74019 -16.31878 -16.09319 -15.94394 -15.40441 -15.10592 -14.69745 -14.27269 -14.13734 -13.87018 -13.76723 -13.50667 -13.23194 -12.89832 -12.75115 -12.62470 -12.45709 -12.30017 -12.07328 -11.78804 -11.67671 -11.18097 -11.09826 -11.08624 -10.97118 -10.82999 -10.49452 -10.18375 -10.05066 -9.63436 -9.47885 -9.06347 -8.71896 -8.61304 -8.13151 -7.83134 -6.35718 -4.37704 0.60119 1.65454 2.10647 2.15277 2.21613 2.50973 2.79957 3.06562 3.19876 3.22020 3.54912 3.74882 3.85197 4.16006 4.24385 4.57959 4.62847 4.92119 4.98972 5.01444 5.02959 5.05790 5.32506 5.54181 5.57830 5.62318 5.68412 5.72533 5.75193 5.95320 6.05678 6.13100 6.16450 6.33944 6.40525 6.72851 6.81417 6.87060 7.09644 7.17006 7.23539 7.26662 7.55783 7.58489 7.78805 8.01633 8.23411 8.68428 9.00052 9.22021 10.75458 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.009915 B = 0.003918 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.444471 B = 7144.564240 C = 8209.926535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.340 6.340 3 C 0.550 3.450 4 O -0.483 6.483 5 C -0.047 4.047 6 N -0.451 5.451 7 C 0.186 3.814 8 O -0.182 6.182 9 C 0.050 3.950 10 C 0.197 3.803 11 N -0.728 5.728 12 C 0.540 3.460 13 O -0.552 6.552 14 C 0.036 3.964 15 H 0.059 0.941 16 C -0.507 4.507 17 H 0.085 0.915 18 C 0.084 3.916 19 N -0.878 5.878 20 Si 0.863 3.137 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.258 1.258 24 C -0.032 4.032 25 C -0.069 4.069 26 C -0.131 4.131 27 C -0.141 4.141 28 C -0.131 4.131 29 C -0.132 4.132 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.261 0.739 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.401 0.599 37 H 0.270 0.730 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 -11.143 -8.335 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.255 6.255 3 C 0.393 3.607 4 O -0.369 6.369 5 C -0.166 4.166 6 N -0.180 5.180 7 C -0.043 4.043 8 O -0.067 6.067 9 C -0.008 4.008 10 C 0.073 3.927 11 N -0.383 5.383 12 C 0.329 3.671 13 O -0.429 6.429 14 C 0.014 3.986 15 H 0.077 0.923 16 C -0.544 4.544 17 H 0.103 0.897 18 C -0.121 4.121 19 N -0.513 5.513 20 Si 0.690 3.310 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.033 4.033 25 C -0.087 4.087 26 C -0.150 4.150 27 C -0.159 4.159 28 C -0.149 4.149 29 C -0.150 4.150 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.276 0.724 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.235 0.765 37 H 0.080 0.920 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.251 -10.953 -8.860 15.413 hybrid contribution -0.046 -0.495 1.116 1.222 sum -6.297 -11.448 -7.744 15.188 Atomic orbital electron populations 1.23358 0.75642 1.03911 1.02937 1.86636 1.23512 1.31509 1.83892 1.19360 0.86062 0.82050 0.73244 1.90962 1.65260 1.35570 1.45117 1.20295 0.92569 0.89315 1.14445 1.70875 0.99898 1.30915 1.16282 1.28229 0.98477 0.78015 0.99572 1.84497 1.27816 1.26264 1.68163 1.23868 0.80428 0.97775 0.98693 1.19855 1.01954 0.83332 0.87555 1.45907 1.70089 1.16436 1.05819 1.21541 0.73445 0.79216 0.92874 1.90589 1.51309 1.54106 1.46908 1.18308 0.96753 0.93545 0.89951 0.92269 1.20540 1.00012 1.25350 1.08485 0.89653 1.25032 0.94524 0.95595 0.96978 1.69863 1.14697 1.43743 1.23020 0.87044 0.82191 0.81196 0.80615 1.19829 1.20776 1.18279 1.19944 0.92617 0.96015 0.94761 1.20922 0.98924 0.91942 0.96890 1.21054 0.94497 0.98699 1.00705 1.20884 0.97084 0.97199 1.00759 1.20879 0.98983 0.93807 1.01236 1.21001 0.94013 0.98664 1.01311 0.91604 0.87823 0.91501 0.72384 0.86652 0.89131 0.76537 0.92017 0.86080 0.87061 0.87318 0.87248 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.34 -4.42 10.58 -40.69 -0.43 -4.86 16 3 C 0.55 8.10 7.96 34.40 0.27 8.38 16 4 O -0.48 -7.92 14.60 -19.29 -0.28 -8.20 16 5 C -0.05 -0.68 7.04 -83.04 -0.58 -1.26 16 6 N -0.45 -5.80 11.36 -11.50 -0.13 -5.93 16 7 C 0.19 1.80 13.19 51.95 0.69 2.48 16 8 O -0.18 -2.24 10.72 6.54 0.07 -2.17 16 9 C 0.05 0.70 6.81 -35.05 -0.24 0.46 16 10 C 0.20 3.11 5.66 -5.19 -0.03 3.08 16 11 N -0.73 -13.60 5.55 -61.47 -0.34 -13.94 16 12 C 0.54 11.84 6.93 -10.99 -0.08 11.76 16 13 O -0.55 -13.08 15.21 5.56 0.08 -12.99 16 14 C 0.04 0.83 2.20 -94.08 -0.21 0.62 16 15 H 0.06 1.31 4.73 -51.93 -0.25 1.06 16 16 C -0.51 -13.17 8.23 -34.44 -0.28 -13.45 16 17 H 0.09 2.46 7.71 -52.49 -0.40 2.06 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 19 N -0.88 -24.67 13.96 55.43 0.77 -23.90 16 20 Si 0.86 19.53 26.84 -169.99 -4.56 14.97 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.26 -5.68 6.96 56.52 0.39 -5.28 16 24 C -0.03 -0.72 4.53 -104.63 -0.47 -1.20 16 25 C -0.07 -1.49 8.04 -39.58 -0.32 -1.81 16 26 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 27 C -0.14 -2.43 10.05 -39.59 -0.40 -2.83 16 28 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 29 C -0.13 -2.65 9.67 -39.58 -0.38 -3.04 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.26 1.00 8.06 -52.48 -0.42 0.57 16 34 H 0.12 1.89 6.49 -51.93 -0.34 1.55 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.40 7.21 8.46 -40.82 -0.35 6.87 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.12 2.75 7.46 -52.49 -0.39 2.36 16 39 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.11 2.05 7.96 -52.49 -0.42 1.63 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -33.30 372.35 -5.73 -39.04 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -4.67 Total: 11.24 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -1.86 Total: 1.13 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.30 Total: -43.77 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.56 Total: -28.22 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.56 Total: 14.97 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.30 -5.73 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471486993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.981 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds