Wall clock time and date at job start Wed Apr 1 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34775 * 116.99879 * 2 1 4 4 O 1.21528 * 120.00400 * 359.97438 * 3 2 1 5 5 C 1.47276 * 119.99857 * 180.02562 * 3 2 1 6 6 N 1.36104 * 126.46205 * 0.17344 * 5 3 2 7 7 C 1.29917 * 108.47691 * 180.27499 * 6 5 3 8 8 O 1.34061 * 109.25991 * 359.73383 * 7 6 5 9 9 C 1.34234 * 108.24146 * 0.02562 * 8 7 6 10 10 C 1.50695 * 126.53028 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47000 * 270.02113 * 10 9 8 12 12 C 1.34777 * 120.00414 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99283 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00190 * 180.26869 * 12 11 10 15 15 H 1.08997 * 109.47248 * 321.77569 * 14 12 11 16 16 C 1.50703 * 109.46609 * 81.77183 * 14 12 11 17 17 H 1.07997 * 119.99884 * 54.32117 * 16 14 12 18 18 C 1.37878 * 120.00237 * 234.30928 * 16 14 12 19 19 N 1.31510 * 120.00139 * 172.34374 * 18 16 14 20 20 Si 1.86798 * 119.99915 * 352.35017 * 18 16 14 21 21 H 1.48503 * 109.46901 * 83.76735 * 20 18 16 22 22 H 1.48495 * 109.47463 * 203.76949 * 20 18 16 23 23 H 1.48502 * 109.47157 * 323.77275 * 20 18 16 24 24 C 1.50697 * 109.47253 * 201.77304 * 14 12 11 25 25 C 1.38237 * 119.99680 * 292.52605 * 24 14 12 26 26 C 1.38235 * 119.99640 * 179.78748 * 25 24 14 27 27 C 1.38234 * 120.00051 * 0.44033 * 26 25 24 28 28 C 1.38228 * 120.00059 * 359.81565 * 27 26 25 29 29 C 1.38227 * 120.00133 * 112.79812 * 24 14 12 30 30 H 1.08999 * 109.47359 * 59.99982 * 1 2 3 31 31 H 1.09002 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46976 * 299.99877 * 1 2 3 33 33 H 1.08004 * 125.37267 * 179.70471 * 7 6 5 34 34 H 1.08993 * 109.47773 * 150.02009 * 10 9 8 35 35 H 1.09004 * 109.47135 * 30.01559 * 10 9 8 36 36 H 0.97007 * 119.99725 * 359.97438 * 11 10 9 37 37 H 0.97003 * 119.99960 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.00222 * 0.02562 * 25 24 14 39 39 H 1.08005 * 120.00161 * 180.27362 * 26 25 24 40 40 H 1.08008 * 120.00058 * 179.83107 * 27 26 25 41 41 H 1.07999 * 120.00424 * 180.02562 * 28 27 26 42 42 H 1.08001 * 119.99916 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5345 1.2779 -0.0006 6 7 4.3996 0.2272 -0.0044 7 6 5.6126 0.6924 0.0023 8 8 5.5722 2.0324 0.0047 9 6 4.2853 2.4140 -0.0002 10 6 3.7696 3.8300 -0.0002 11 7 3.5971 4.2869 1.3810 12 6 3.1431 5.5318 1.6273 13 8 2.8779 6.2739 0.7054 14 6 2.9715 6.0039 3.0481 15 1 2.5936 5.1848 3.6600 16 6 4.3011 6.4629 3.5889 17 1 4.8727 7.2081 3.0557 18 6 4.7878 5.9317 4.7645 19 7 6.0095 6.2169 5.1588 20 14 3.7117 4.8069 5.7971 21 1 3.7970 3.4207 5.2713 22 1 4.1790 4.8314 7.2064 23 1 2.3036 5.2742 5.7343 24 6 1.9928 7.1493 3.0821 25 6 2.3263 8.3606 2.5057 26 6 1.4268 9.4100 2.5330 27 6 0.1974 9.2508 3.1448 28 6 -0.1339 8.0411 3.7259 29 6 0.7639 6.9904 3.6947 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 6.5117 0.0940 0.0059 34 1 2.8110 3.8676 -0.5177 35 1 4.4835 4.4767 -0.5104 36 1 3.8096 3.6934 2.1183 37 1 6.3520 5.8429 5.9857 38 1 3.2880 8.4860 2.0306 39 1 1.6855 10.3551 2.0788 40 1 -0.5043 10.0715 3.1686 41 1 -1.0945 7.9165 4.2035 42 1 0.5049 6.0452 4.1485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471486993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:39 Heat of formation + Delta-G solvation = -89.922868 kcal Electronic energy + Delta-G solvation = -29768.436819 eV Core-core repulsion = 25486.761892 eV Total energy + Delta-G solvation = -4281.674928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.73686 -41.42899 -41.02057 -39.48036 -37.75254 -36.14944 -36.08858 -35.53512 -33.43734 -32.24718 -31.62108 -29.79548 -29.12018 -27.59003 -25.53669 -25.10352 -23.42868 -23.34705 -22.58644 -21.96853 -21.13484 -19.61531 -19.16464 -18.46222 -18.30766 -18.07033 -17.66976 -17.31458 -17.05427 -16.74235 -16.52936 -16.23898 -15.76517 -15.55717 -15.29561 -14.92594 -14.79940 -14.48713 -14.45790 -14.24411 -14.13381 -13.90177 -13.74496 -13.35778 -13.09328 -12.93798 -12.78619 -12.66369 -12.12534 -12.08928 -11.94180 -11.90825 -11.90562 -11.73033 -11.46080 -11.01160 -10.76085 -10.33463 -10.17431 -9.63488 -9.38312 -8.39148 -6.46389 -0.49197 0.63439 0.70478 0.75565 1.13104 1.27829 1.35765 1.43925 1.57471 1.73081 1.80518 2.25765 2.37851 2.93126 2.96245 3.14977 3.15426 3.59137 3.93082 4.03020 4.06883 4.20156 4.22433 4.25361 4.29585 4.34456 4.41627 4.44236 4.49858 4.55595 4.66252 4.83127 4.89333 4.95531 5.11506 5.18717 5.28583 5.33924 5.37425 5.70090 5.75228 5.94251 6.14979 6.16535 6.29608 6.46522 6.52043 6.56935 7.16786 7.29281 8.75931 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.009915 B = 0.003918 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.444471 B = 7144.564240 C = 8209.926535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.345 6.345 3 C 0.548 3.452 4 O -0.508 6.508 5 C -0.049 4.049 6 N -0.480 5.480 7 C 0.219 3.781 8 O -0.188 6.188 9 C 0.035 3.965 10 C 0.202 3.798 11 N -0.721 5.721 12 C 0.537 3.463 13 O -0.576 6.576 14 C 0.038 3.962 15 H 0.068 0.932 16 C -0.505 4.505 17 H 0.037 0.963 18 C 0.036 3.964 19 N -0.926 5.926 20 Si 0.921 3.079 21 H -0.250 1.250 22 H -0.282 1.282 23 H -0.245 1.245 24 C -0.064 4.064 25 C -0.098 4.098 26 C -0.135 4.135 27 C -0.133 4.133 28 C -0.125 4.125 29 C -0.147 4.147 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.064 0.936 33 H 0.316 0.684 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.404 0.596 37 H 0.272 0.728 38 H 0.090 0.910 39 H 0.135 0.865 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.841 -12.882 -7.809 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.260 6.260 3 C 0.392 3.608 4 O -0.397 6.397 5 C -0.167 4.167 6 N -0.207 5.207 7 C -0.010 4.010 8 O -0.074 6.074 9 C -0.023 4.023 10 C 0.078 3.922 11 N -0.373 5.373 12 C 0.326 3.674 13 O -0.456 6.456 14 C 0.017 3.983 15 H 0.086 0.914 16 C -0.542 4.542 17 H 0.055 0.945 18 C -0.165 4.165 19 N -0.563 5.563 20 Si 0.743 3.257 21 H -0.175 1.175 22 H -0.208 1.208 23 H -0.169 1.169 24 C -0.065 4.065 25 C -0.117 4.117 26 C -0.153 4.153 27 C -0.151 4.151 28 C -0.143 4.143 29 C -0.165 4.165 30 H 0.087 0.913 31 H 0.156 0.844 32 H 0.083 0.917 33 H 0.331 0.669 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.239 0.761 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.153 0.847 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.282 -12.741 -8.355 17.342 hybrid contribution 0.598 0.037 0.848 1.038 sum -7.684 -12.704 -7.507 16.637 Atomic orbital electron populations 1.23697 0.73617 1.06209 1.03000 1.86629 1.25553 1.30541 1.83321 1.19546 0.86403 0.82206 0.72694 1.90943 1.65884 1.36404 1.46440 1.20356 0.92696 0.89806 1.13871 1.70909 1.00797 1.30641 1.18386 1.29564 0.99264 0.77018 0.95107 1.84510 1.26785 1.27726 1.68350 1.23330 0.81298 0.96722 1.00954 1.19730 1.01929 0.84857 0.85639 1.45796 1.68703 1.15428 1.07400 1.21352 0.73667 0.80048 0.92360 1.90561 1.52577 1.55043 1.47376 1.18230 0.95381 0.94300 0.90407 0.91380 1.20455 1.01151 1.24185 1.08426 0.94493 1.25784 0.95557 0.97199 0.97916 1.69997 1.16697 1.45788 1.23835 0.86111 0.80794 0.80196 0.78574 1.17460 1.20816 1.16885 1.19998 0.93943 0.95787 0.96781 1.20865 0.98812 0.93490 0.98518 1.21367 0.94695 0.98670 1.00546 1.21372 0.96694 0.98301 0.98683 1.21354 0.99845 0.92964 1.00101 1.21250 0.93642 1.00265 1.01311 0.91287 0.84419 0.91745 0.66943 0.87296 0.89082 0.76131 0.91832 0.89147 0.84746 0.83095 0.83298 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.66 16 2 O -0.35 -8.65 10.58 -56.86 -0.60 -9.25 16 3 C 0.55 16.00 7.96 70.20 0.56 16.56 16 4 O -0.51 -16.86 14.60 19.74 0.29 -16.57 16 5 C -0.05 -1.37 7.04 40.38 0.28 -1.08 16 6 N -0.48 -11.39 11.36 -305.20 -3.47 -14.86 16 7 C 0.22 3.59 13.19 130.53 1.72 5.31 16 8 O -0.19 -4.34 10.72 0.50 0.01 -4.33 16 9 C 0.03 0.96 6.81 25.20 0.17 1.14 16 10 C 0.20 6.59 5.66 85.63 0.48 7.07 16 11 N -0.72 -27.72 5.55 -466.79 -2.59 -30.31 16 12 C 0.54 24.54 6.93 87.66 0.61 25.15 16 13 O -0.58 -28.72 15.21 -3.04 -0.05 -28.77 16 14 C 0.04 1.82 2.20 -13.03 -0.03 1.79 16 15 H 0.07 3.01 4.73 -2.39 -0.01 3.00 16 16 C -0.50 -27.64 8.23 25.60 0.21 -27.43 16 17 H 0.04 2.32 7.71 -2.91 -0.02 2.30 16 18 C 0.04 1.96 5.47 84.66 0.46 2.42 16 19 N -0.93 -54.02 13.96 21.45 0.30 -53.72 16 20 Si 0.92 40.04 26.84 68.60 1.84 41.88 16 21 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.25 -10.08 6.96 99.48 0.69 -9.39 16 24 C -0.06 -2.92 4.53 -19.87 -0.09 -3.01 16 25 C -0.10 -4.45 8.04 22.27 0.18 -4.27 16 26 C -0.13 -4.93 10.05 22.27 0.22 -4.70 16 27 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16 28 C -0.12 -4.01 10.05 22.27 0.22 -3.79 16 29 C -0.15 -5.70 9.67 22.27 0.22 -5.48 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.32 0.89 8.06 -2.91 -0.02 0.86 16 34 H 0.11 3.72 6.49 -2.39 -0.02 3.71 16 35 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 36 H 0.40 14.76 8.46 -92.70 -0.78 13.98 16 37 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.09 4.50 7.46 -2.91 -0.02 4.48 16 39 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 40 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.12 4.30 7.96 -2.91 -0.02 4.28 16 Total: -1.00 -77.20 372.35 2.66 -74.54 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.29 Total: 33.99 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 6.65 Total: 7.42 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -5.76 Total: -98.90 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -0.35 Total: -58.93 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.84 Total: 41.88 kcal Total: -77.20 2.66 -74.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471486993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.383 kcal (2) G-P(sol) polarization free energy of solvation -77.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds