Wall clock time and date at job start Wed Apr 1 2020 01:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46951 * 2 1 4 4 C 1.53001 * 109.47529 * 120.00181 * 2 1 3 5 5 N 1.46495 * 109.47163 * 175.00024 * 4 2 1 6 6 C 1.34778 * 120.00079 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99868 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00222 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.47139 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00028 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00151 * 0.02562 * 10 9 8 12 12 C 1.38801 * 120.00331 * 179.97438 * 10 9 8 13 13 N 1.31634 * 119.99410 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00494 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46561 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46989 * 120.00058 * 14 12 10 17 17 H 1.48492 * 109.47259 * 240.00398 * 14 12 10 18 18 N 1.46907 * 109.47194 * 240.00687 * 2 1 3 19 19 C 1.46898 * 110.99938 * 84.99468 * 18 2 1 20 20 C 1.50706 * 109.46877 * 179.97438 * 19 18 2 21 21 C 1.38247 * 120.00269 * 259.72695 * 20 19 18 22 22 C 1.38212 * 120.06987 * 179.71830 * 21 20 19 23 23 C 1.38256 * 120.07333 * 0.55713 * 22 21 20 24 24 C 1.38371 * 119.99605 * 359.72539 * 23 22 21 25 25 F 1.35100 * 120.03493 * 179.97438 * 24 23 22 26 26 C 1.38373 * 119.99746 * 80.00006 * 20 19 18 27 27 F 1.35100 * 120.03437 * 359.97438 * 26 20 19 28 28 H 1.09010 * 109.46705 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47204 * 299.99474 * 1 2 3 30 30 H 1.08997 * 109.47547 * 59.99892 * 1 2 3 31 31 H 1.08996 * 109.47004 * 295.00317 * 4 2 1 32 32 H 1.09003 * 109.46374 * 55.00292 * 4 2 1 33 33 H 0.97002 * 120.00305 * 0.02562 * 5 4 2 34 34 H 1.08996 * 109.47332 * 300.00231 * 8 6 5 35 35 H 1.09007 * 109.47178 * 60.00137 * 8 6 5 36 36 H 0.97007 * 119.99690 * 180.02562 * 13 12 10 37 37 H 1.00900 * 110.99558 * 321.03979 * 18 2 1 38 38 H 1.09000 * 109.47219 * 60.00455 * 19 18 2 39 39 H 1.08997 * 109.47590 * 300.00019 * 19 18 2 40 40 H 1.08003 * 119.96666 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.96571 * 180.27379 * 22 21 20 42 42 H 1.07996 * 120.00364 * 179.73873 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1732 -1.4282 2.1910 7 8 3.5702 -1.8833 3.1398 8 6 5.6750 -1.5369 2.1303 9 16 6.2784 -2.3900 3.6082 10 6 8.0102 -2.3770 3.2833 11 1 8.3864 -1.9238 2.3781 12 6 8.8910 -2.9483 4.1913 13 7 8.4324 -3.5002 5.2949 14 14 10.7268 -2.9352 3.8466 15 1 10.9819 -2.2600 2.5488 16 1 11.4289 -2.2032 4.9313 17 1 11.2291 -4.3313 3.7860 18 7 2.0197 -0.6924 -1.1996 19 6 2.0824 0.2228 -2.3469 20 6 2.5885 -0.5212 -3.5558 21 6 3.9112 -0.3992 -3.9390 22 6 4.3782 -1.0855 -5.0440 23 6 3.5209 -1.8864 -5.7754 24 6 2.1950 -2.0061 -5.3980 25 9 1.3565 -2.7881 -6.1124 26 6 1.7278 -1.3221 -4.2857 27 9 0.4339 -1.4379 -3.9148 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.7517 -0.1584 2.1369 32 1 1.6055 -1.7199 1.2950 33 1 3.9825 -0.4621 0.4318 34 1 5.9630 -2.1004 1.2429 35 1 6.1100 -0.5384 2.0837 36 1 9.0480 -3.8992 5.9296 37 1 1.4496 -1.4978 -1.4101 38 1 2.7587 1.0464 -2.1182 39 1 1.0870 0.6165 -2.5525 40 1 4.5813 0.2298 -3.3718 41 1 5.4129 -0.9924 -5.3393 42 1 3.8860 -2.4188 -6.6412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480426716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:19 Heat of formation + Delta-G solvation = -131.674027 kcal Electronic energy + Delta-G solvation = -26533.949488 eV Core-core repulsion = 22274.820530 eV Total energy + Delta-G solvation = -4259.128958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.53104 -49.62359 -40.60853 -40.06923 -38.31374 -35.29568 -34.55159 -33.40286 -31.26743 -31.14869 -30.21823 -27.70710 -26.87833 -26.07599 -23.82825 -22.73493 -22.03033 -21.55775 -19.77382 -18.96629 -18.27812 -17.98742 -17.64124 -17.45516 -17.31405 -16.88442 -16.85125 -16.24343 -16.07113 -15.92408 -15.73868 -15.52638 -15.51080 -15.03919 -14.58132 -14.43755 -14.21300 -13.97824 -13.76803 -13.58062 -13.19279 -13.12306 -13.10080 -13.02320 -12.88511 -12.73139 -12.65258 -12.51372 -12.09142 -11.87304 -11.66622 -11.13026 -10.88304 -10.22346 -10.02785 -9.94756 -9.73817 -9.43764 -8.62979 -8.31686 -6.09293 -0.05520 -0.01545 1.31199 1.43955 1.51203 1.62008 1.71934 2.29834 2.35673 2.42868 2.78481 3.02538 3.17258 3.31966 3.38318 3.55349 3.76039 3.85440 3.95219 4.03954 4.16841 4.21722 4.29995 4.36767 4.41694 4.56983 4.59243 4.64226 4.77113 4.81495 4.87416 4.92207 4.96644 5.02225 5.21934 5.22837 5.34800 5.45248 5.55905 5.78011 5.94421 6.23309 6.24445 6.67769 7.09687 7.38146 8.77849 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.011534 B = 0.002310 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.104688 B =12118.046554 C =13922.938270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 H 0.107 0.893 4 C 0.132 3.868 5 N -0.696 5.696 6 C 0.529 3.471 7 O -0.574 6.574 8 C -0.125 4.125 9 S -0.157 6.157 10 C -0.542 4.542 11 H 0.084 0.916 12 C 0.011 3.989 13 N -0.913 5.913 14 Si 1.000 3.000 15 H -0.254 1.254 16 H -0.275 1.275 17 H -0.275 1.275 18 N -0.683 5.683 19 C 0.100 3.900 20 C -0.092 4.092 21 C -0.079 4.079 22 C -0.092 4.092 23 C -0.127 4.127 24 C 0.038 3.962 25 F -0.146 7.146 26 C 0.047 3.953 27 F -0.143 7.143 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.418 0.582 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.270 0.730 37 H 0.341 0.659 38 H 0.114 0.886 39 H 0.047 0.953 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.141 12.006 -26.083 31.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.024 4.024 3 H 0.125 0.875 4 C 0.007 3.993 5 N -0.349 5.349 6 C 0.315 3.685 7 O -0.454 6.454 8 C -0.277 4.277 9 S 0.070 5.930 10 C -0.690 4.690 11 H 0.102 0.898 12 C -0.194 4.194 13 N -0.550 5.550 14 Si 0.822 3.178 15 H -0.178 1.178 16 H -0.200 1.200 17 H -0.201 1.201 18 N -0.314 5.314 19 C -0.028 4.028 20 C -0.093 4.093 21 C -0.098 4.098 22 C -0.110 4.110 23 C -0.145 4.145 24 C 0.018 3.982 25 F -0.125 7.125 26 C 0.027 3.973 27 F -0.121 7.121 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.256 0.744 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.159 0.841 38 H 0.132 0.868 39 H 0.066 0.934 40 H 0.185 0.815 41 H 0.189 0.811 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.565 11.244 -24.231 29.520 hybrid contribution 0.064 -0.062 -1.486 1.489 sum -12.501 11.182 -25.717 30.703 Atomic orbital electron populations 1.22371 0.95131 1.02659 1.03432 1.21725 0.93959 0.98499 0.88239 0.87537 1.21392 0.79621 1.00305 0.97954 1.45516 1.07617 1.59044 1.22719 1.20081 0.88903 0.77231 0.82307 1.90682 1.70515 1.48979 1.35191 1.23334 0.94904 1.05623 1.03802 1.85611 1.05960 1.75286 1.26109 1.23236 0.91563 1.44131 1.10059 0.89809 1.26158 1.05300 0.93870 0.94046 1.70206 1.37297 1.36762 1.10714 0.84886 0.75797 0.78226 0.78911 1.17771 1.20016 1.20086 1.60610 1.57919 1.09605 1.03301 1.20937 1.00963 0.94630 0.86257 1.19922 0.94234 0.98003 0.97134 1.21456 0.93389 0.98621 0.96303 1.21540 1.01405 0.94208 0.93876 1.21446 0.89930 1.00727 1.02444 1.18073 0.90305 0.96600 0.93229 1.91487 1.71309 1.72635 1.77061 1.17883 0.79693 1.02784 0.96942 1.91472 1.34594 1.94940 1.91118 0.92675 0.90814 0.91288 0.91672 0.93400 0.74439 0.87497 0.87199 0.92082 0.84061 0.86783 0.93441 0.81471 0.81107 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.16 71.98 0.66 -1.40 16 2 C 0.09 1.11 2.75 44.91 0.12 1.23 16 3 H 0.11 1.04 7.80 -2.38 -0.02 1.02 16 4 C 0.13 2.83 5.37 86.38 0.46 3.29 16 5 N -0.70 -17.38 5.39 -463.08 -2.49 -19.87 16 6 C 0.53 19.70 7.85 87.66 0.69 20.38 16 7 O -0.57 -27.12 15.86 -3.03 -0.05 -27.17 16 8 C -0.13 -4.97 6.16 71.23 0.44 -4.53 16 9 S -0.16 -8.77 20.57 -56.49 -1.16 -9.94 16 10 C -0.54 -30.89 9.50 67.95 0.65 -30.24 16 11 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 12 C 0.01 0.61 5.49 84.86 0.47 1.07 16 13 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16 14 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 15 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 18 N -0.68 -9.10 5.68 -495.55 -2.81 -11.91 16 19 C 0.10 1.01 5.33 85.56 0.46 1.46 16 20 C -0.09 -1.14 5.40 -19.83 -0.11 -1.25 16 21 C -0.08 -0.69 9.67 22.27 0.22 -0.47 16 22 C -0.09 -0.73 10.04 22.27 0.22 -0.51 16 23 C -0.13 -1.45 10.02 22.31 0.22 -1.22 16 24 C 0.04 0.66 7.31 22.41 0.16 0.82 16 25 F -0.15 -3.09 17.18 44.97 0.77 -2.32 16 26 C 0.05 0.82 7.25 22.41 0.16 0.99 16 27 F -0.14 -2.89 16.58 44.97 0.75 -2.15 16 28 H 0.05 0.74 8.13 -2.38 -0.02 0.72 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.70 7.45 -2.39 -0.02 0.68 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.42 7.90 8.14 -92.71 -0.75 7.15 16 34 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 35 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 36 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 37 H 0.34 5.45 8.46 -89.69 -0.76 4.69 16 38 H 0.11 0.68 7.91 -2.39 -0.02 0.66 16 39 H 0.05 0.49 7.24 -2.39 -0.02 0.48 16 40 H 0.17 0.63 8.03 -2.91 -0.02 0.61 16 41 H 0.17 0.36 8.06 -2.91 -0.02 0.33 16 42 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -79.68 382.76 1.69 -77.99 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -0.45 Total: 16.40 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 4.82 Total: -10.37 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -5.02 Total: -87.86 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.05 Total: -27.17 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 1.52 Total: -4.46 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.94 kcal Total: -79.68 1.69 -77.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480426716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.681 kcal (2) G-P(sol) polarization free energy of solvation -79.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds