Wall clock time and date at job start Wed Apr 1 2020 02:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 120.00381 * 2 1 4 4 C 1.53000 * 109.46840 * 90.00024 * 3 2 1 5 5 N 1.46901 * 109.46769 * 180.02562 * 4 3 2 6 6 C 1.46906 * 110.99793 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47183 * 180.02562 * 6 5 4 8 8 C 1.38208 * 119.97146 * 269.72809 * 7 6 5 9 9 C 1.38479 * 120.02156 * 179.77020 * 8 7 6 10 10 F 1.35106 * 120.01280 * 180.27233 * 9 8 7 11 11 C 1.38419 * 119.97704 * 0.52111 * 9 8 7 12 12 C 1.38419 * 119.94440 * 359.72971 * 11 9 8 13 13 F 1.35101 * 120.00973 * 179.97438 * 12 11 9 14 14 C 1.38208 * 119.97722 * 89.99682 * 7 6 5 15 15 C 1.34781 * 119.99832 * 180.02562 * 2 1 3 16 16 O 1.21281 * 120.00142 * 180.02562 * 15 2 1 17 17 C 1.50703 * 120.00021 * 359.97438 * 15 2 1 18 18 S 1.80999 * 109.47324 * 180.02562 * 17 15 2 19 19 C 1.76197 * 100.00030 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00038 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99974 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00316 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99814 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47215 * 90.00186 * 23 21 19 25 25 H 1.48504 * 109.47087 * 209.99862 * 23 21 19 26 26 H 1.48496 * 109.47354 * 329.99741 * 23 21 19 27 27 H 1.08996 * 109.47253 * 89.99251 * 1 2 3 28 28 H 1.08999 * 109.47380 * 210.00276 * 1 2 3 29 29 H 1.09001 * 109.46721 * 329.99669 * 1 2 3 30 30 H 1.09001 * 109.46813 * 330.00298 * 3 2 1 31 31 H 1.08992 * 109.47397 * 210.00360 * 3 2 1 32 32 H 1.09002 * 109.47398 * 300.00326 * 4 3 2 33 33 H 1.09001 * 109.47194 * 60.00507 * 4 3 2 34 34 H 1.00899 * 111.00283 * 303.95539 * 5 4 3 35 35 H 1.08995 * 109.47087 * 299.99901 * 6 5 4 36 36 H 1.09002 * 109.46903 * 59.99922 * 6 5 4 37 37 H 1.08001 * 119.98967 * 359.97438 * 8 7 6 38 38 H 1.07997 * 120.02499 * 179.70386 * 11 9 8 39 39 H 1.07999 * 119.98491 * 359.97438 * 14 7 6 40 40 H 1.08997 * 109.47209 * 300.00559 * 17 15 2 41 41 H 1.09001 * 109.47189 * 59.99732 * 17 15 2 42 42 H 0.96997 * 120.00221 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1867 2.9827 1.4425 6 6 3.4504 3.4383 2.8140 7 6 4.2026 4.7435 2.7738 8 6 5.5846 4.7438 2.7602 9 6 6.2768 5.9425 2.7185 10 9 7.6278 5.9424 2.6996 11 6 5.5843 7.1409 2.7014 12 6 4.2002 7.1393 2.7203 13 9 3.5230 8.3082 2.7041 14 6 3.5101 5.9394 2.7563 15 6 2.1389 -1.1673 -0.0005 16 8 3.3517 -1.1673 -0.0001 17 6 1.3854 -2.4724 -0.0005 18 16 2.5615 -3.8482 -0.0005 19 6 1.4413 -5.2082 0.0003 20 1 0.3761 -5.0305 0.0001 21 6 1.9280 -6.5081 -0.0001 22 7 1.0912 -7.5242 0.0000 23 14 3.7705 -6.8155 -0.0006 24 1 4.2592 -6.8972 1.3993 25 1 4.0590 -8.0929 -0.7009 26 1 4.4581 -5.7010 -0.7007 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6085 2.0283 -0.5138 31 1 3.1499 1.1383 -0.5138 32 1 1.5002 1.8406 1.9564 33 1 3.0417 0.9506 1.9563 34 1 4.0441 2.9056 0.9163 35 1 2.5052 3.5801 3.3378 36 1 4.0470 2.6906 3.3368 37 1 6.1249 3.8089 2.7788 38 1 6.1234 8.0762 2.6737 39 1 2.4302 5.9380 2.7709 40 1 0.7590 -2.5303 0.8896 41 1 0.7583 -2.5299 -0.8903 42 1 1.4313 -8.4326 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493482520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:48 Heat of formation + Delta-G solvation = -97.847936 kcal Electronic energy + Delta-G solvation = -25762.891952 eV Core-core repulsion = 21505.229803 eV Total energy + Delta-G solvation = -4257.662149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.46393 -49.44233 -39.79921 -39.53625 -36.77361 -35.25140 -32.46924 -32.41944 -30.83212 -30.30589 -28.34980 -26.69602 -25.68055 -25.17492 -23.36037 -22.52778 -22.11160 -19.36773 -18.28891 -17.75001 -17.68783 -16.91298 -16.84472 -16.48594 -16.39538 -16.12515 -15.88564 -15.75181 -15.45823 -15.01283 -14.88335 -14.69453 -14.40543 -13.86521 -13.61894 -13.40500 -13.11084 -13.08818 -12.82236 -12.73579 -12.44537 -12.43851 -12.32124 -12.24045 -11.91912 -11.71348 -11.31901 -11.24858 -11.03546 -10.62353 -9.88748 -9.60050 -9.50913 -9.25603 -9.03194 -8.90989 -8.67914 -8.52673 -6.95436 -6.31572 -4.03681 0.41828 0.46898 2.62408 2.79429 2.87352 3.13914 3.30475 3.32510 3.47917 3.54933 3.83332 3.89622 4.12120 4.29605 4.30332 4.41803 4.56822 4.61660 4.74374 4.81807 4.97038 4.99375 5.05268 5.07563 5.18414 5.27272 5.29279 5.33338 5.35678 5.46342 5.49438 5.62223 5.65934 5.71395 5.79765 5.82982 5.97192 6.24147 6.36721 6.57665 6.90292 7.36631 7.91391 8.36681 8.38790 9.14568 10.77582 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.001741 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.422129 B =16074.298060 C =17175.216235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.622 5.622 3 C 0.121 3.879 4 C 0.042 3.958 5 N -0.682 5.682 6 C 0.096 3.904 7 C -0.023 4.023 8 C -0.158 4.158 9 C 0.132 3.868 10 F -0.130 7.130 11 C -0.194 4.194 12 C 0.129 3.871 13 F -0.131 7.131 14 C -0.141 4.141 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.121 4.121 18 S -0.144 6.144 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.346 0.654 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.728 29.906 5.722 30.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.358 5.358 3 C -0.003 4.003 4 C -0.088 4.088 5 N -0.314 5.314 6 C -0.033 4.033 7 C -0.024 4.024 8 C -0.177 4.177 9 C 0.112 3.888 10 F -0.109 7.109 11 C -0.213 4.213 12 C 0.110 3.890 13 F -0.109 7.109 14 C -0.161 4.161 15 C 0.319 3.681 16 O -0.393 6.393 17 C -0.272 4.272 18 S 0.082 5.918 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.164 0.836 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.163 0.837 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.928 30.107 5.641 30.882 hybrid contribution -0.020 -0.728 0.312 0.792 sum 3.908 29.379 5.954 30.230 Atomic orbital electron populations 1.21822 0.79233 1.03312 1.02099 1.47788 1.07063 1.05475 1.75509 1.21253 0.98462 0.84780 0.95824 1.22365 0.98845 0.89315 0.98234 1.60473 1.27484 1.30690 1.12722 1.20915 0.99612 0.91723 0.91005 1.19425 0.92153 0.94972 0.95806 1.21180 0.94429 0.97707 1.04396 1.17229 0.77135 0.93552 1.00873 1.91554 1.28414 1.97330 1.93588 1.21049 0.93380 0.99052 1.07862 1.17267 0.89101 0.81636 1.00997 1.91546 1.79873 1.45902 1.93620 1.21100 1.01571 0.90170 1.03225 1.20360 0.87936 0.84715 0.75101 1.90687 1.13733 1.86869 1.47975 1.23314 1.03086 0.95126 1.05639 1.84785 1.12004 0.97581 1.97422 1.22300 0.94851 0.90874 1.58854 0.89379 1.24712 0.98532 0.94880 0.93174 1.69933 1.34795 0.98886 1.47996 0.86737 0.85366 0.79842 0.79915 1.19231 1.19918 1.15942 0.92416 0.90526 0.91152 0.89810 0.89911 0.90659 0.94038 0.83579 0.89222 0.93134 0.83949 0.83461 0.83708 0.88520 0.88448 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.24 59.85 0.61 1.33 16 2 N -0.62 -7.74 2.87 -181.57 -0.52 -8.26 16 3 C 0.12 1.25 5.67 -4.04 -0.02 1.22 16 4 C 0.04 0.39 6.01 -3.82 -0.02 0.37 16 5 N -0.68 -5.24 6.49 -115.05 -0.75 -5.99 16 6 C 0.10 0.63 5.81 -4.97 -0.03 0.60 16 7 C -0.02 -0.15 5.39 -104.64 -0.56 -0.72 16 8 C -0.16 -1.10 9.68 -39.50 -0.38 -1.48 16 9 C 0.13 1.01 7.30 -39.43 -0.29 0.72 16 10 F -0.13 -1.13 17.27 2.25 0.04 -1.09 16 11 C -0.19 -1.37 10.01 -39.45 -0.39 -1.77 16 12 C 0.13 0.95 7.30 -39.43 -0.29 0.67 16 13 F -0.13 -1.06 17.27 2.25 0.04 -1.02 16 14 C -0.14 -0.94 9.68 -39.51 -0.38 -1.33 16 15 C 0.53 9.18 7.69 -10.98 -0.08 9.09 16 16 O -0.52 -10.75 15.44 5.56 0.09 -10.67 16 17 C -0.12 -2.29 4.71 36.01 0.17 -2.12 16 18 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 19 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 20 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 21 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.27 13.97 55.49 0.78 -25.49 16 23 Si 0.86 21.58 27.74 -169.99 -4.71 16.86 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.72 6.44 -51.93 -0.33 0.38 16 29 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 30 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.08 1.00 7.42 -51.93 -0.39 0.61 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.35 2.66 8.72 -39.29 -0.34 2.32 16 35 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 36 H 0.05 0.34 8.08 -51.93 -0.42 -0.08 16 37 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.10 1.69 7.40 -51.92 -0.38 1.31 16 41 H 0.10 1.73 8.11 -51.92 -0.42 1.31 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -33.20 380.91 -8.42 -41.61 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.66 Total: -0.85 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.46 Total: -5.24 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -0.49 Total: -39.74 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.08 Total: -2.11 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.20 -8.42 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493482520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.233 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds