Wall clock time and date at job start Wed Apr 1 2020 01:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53004 * 109.46857 * 239.99875 * 2 1 3 5 5 N 1.46505 * 109.46638 * 64.99855 * 4 2 1 6 6 C 1.34783 * 119.99564 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99859 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99854 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.47083 * 180.02562 * 8 6 5 10 10 C 1.76199 * 99.99850 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00162 * 359.97438 * 10 9 8 12 12 C 1.38798 * 119.99956 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00171 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00090 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46991 * 60.00489 * 14 12 10 16 16 H 1.48500 * 109.47132 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47284 * 300.00275 * 14 12 10 18 18 C 1.52996 * 109.47212 * 120.00567 * 2 1 3 19 19 N 1.46504 * 109.46681 * 294.99295 * 18 2 1 20 20 C 1.34777 * 119.99854 * 179.97438 * 19 18 2 21 21 O 1.21743 * 120.00050 * 0.02562 * 20 19 18 22 22 C 1.46377 * 120.00307 * 180.27510 * 20 19 18 23 23 C 1.33976 * 119.22871 * 359.46430 * 22 20 19 24 24 O 1.35002 * 121.69250 * 180.02562 * 23 22 20 25 25 C 1.43243 * 116.82955 * 343.35155 * 24 23 22 26 26 C 1.53559 * 108.08981 * 45.23306 * 25 24 23 27 27 O 1.36208 * 119.23645 * 179.72570 * 22 20 19 28 28 H 1.08998 * 109.47104 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46459 * 299.99928 * 1 2 3 30 30 H 1.08994 * 109.47070 * 59.99512 * 1 2 3 31 31 H 1.08999 * 109.47248 * 185.00089 * 4 2 1 32 32 H 1.08997 * 109.47454 * 305.00354 * 4 2 1 33 33 H 0.96994 * 120.00258 * 0.02562 * 5 4 2 34 34 H 1.08999 * 109.46982 * 300.00003 * 8 6 5 35 35 H 1.09003 * 109.47276 * 59.99466 * 8 6 5 36 36 H 0.96995 * 120.00337 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.47328 * 174.99628 * 18 2 1 38 38 H 1.08997 * 109.47540 * 54.99374 * 18 2 1 39 39 H 0.97000 * 120.00410 * 0.02562 * 19 18 2 40 40 H 1.08007 * 119.15637 * 0.36492 * 23 22 20 41 41 H 1.09003 * 109.74140 * 285.58758 * 25 24 23 42 42 H 1.08998 * 109.74305 * 164.88191 * 25 24 23 43 43 H 1.08999 * 109.75155 * 182.21528 * 26 25 24 44 44 H 1.08999 * 109.79258 * 61.50074 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6523 0.0354 -2.4424 6 6 1.9963 -0.4131 -3.6660 7 8 2.6263 -1.4432 -3.7793 8 6 1.5980 0.3655 -4.8933 9 16 2.2011 -0.4878 -6.3712 10 6 1.6116 0.6077 -7.6189 11 1 1.0589 1.4935 -7.3427 12 6 1.8575 0.3322 -8.9569 13 7 2.5306 -0.7476 -9.2937 14 14 1.2318 1.4932 -10.2799 15 1 1.8232 2.8401 -10.0764 16 1 1.6237 0.9780 -11.6163 17 1 -0.2480 1.5849 -10.1985 18 6 2.0401 -0.7214 1.2491 19 7 1.6526 0.0353 2.4423 20 6 1.9957 -0.4137 3.6659 21 8 2.6281 -1.4478 3.7796 22 6 1.6035 0.3391 4.8584 23 6 0.9128 1.4782 4.7152 24 8 0.5262 2.2119 5.7804 25 6 0.5528 1.5623 7.0568 26 6 1.8791 0.7976 7.1751 27 8 1.9537 -0.1319 6.0875 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.1263 -0.7996 -1.2057 32 1 1.6054 -1.7198 -1.2952 33 1 1.1488 0.8594 -2.3517 34 1 0.5117 0.4438 -4.9372 35 1 2.0326 1.3641 -4.8470 36 1 2.7021 -0.9403 -10.2287 37 1 3.1264 -0.7996 1.2055 38 1 1.6054 -1.7199 1.2951 39 1 1.1485 0.8591 2.3518 40 1 0.6540 1.8153 3.7222 41 1 -0.2820 0.8655 7.1327 42 1 0.4850 2.3066 7.8502 43 1 1.9109 0.2598 8.1227 44 1 2.7141 1.4960 7.1198 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500057840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:55 Heat of formation + Delta-G solvation = -131.184582 kcal Electronic energy + Delta-G solvation = -26291.548949 eV Core-core repulsion = 22143.528731 eV Total energy + Delta-G solvation = -4148.020219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66087 -39.96676 -39.24185 -37.65252 -36.97114 -34.73555 -33.13387 -32.43418 -31.97748 -29.68700 -29.22877 -27.14616 -26.09184 -25.58115 -25.12955 -22.33341 -21.06496 -20.42844 -20.01764 -18.94710 -18.85193 -17.82760 -17.03321 -16.64634 -16.31764 -16.06331 -15.93755 -15.48131 -15.40335 -15.20940 -14.81049 -14.79928 -14.75975 -14.39955 -14.03245 -13.80902 -13.66263 -13.16184 -13.13608 -12.95693 -12.73540 -12.56691 -11.95381 -11.66388 -11.59220 -11.42289 -11.29759 -11.25885 -11.05175 -11.04369 -10.77603 -10.36977 -9.83233 -9.60384 -9.43450 -9.07038 -8.91992 -8.78151 -8.24619 -6.50697 -6.21909 -3.92823 0.74888 2.04816 2.50960 2.78258 2.99465 3.08287 3.19372 3.22959 3.27641 3.31841 3.67007 3.69742 4.13570 4.19979 4.21021 4.27946 4.36457 4.39636 4.47381 4.53285 4.70075 4.88047 4.98474 5.11581 5.13115 5.19088 5.25636 5.33608 5.40828 5.51806 5.60161 5.64969 5.82177 5.85474 5.87610 5.93691 6.11961 6.15470 6.56426 6.65558 6.98859 7.58488 7.66460 7.72120 8.34326 8.59145 9.23150 10.85442 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.033619 B = 0.001448 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.670552 B =19326.616560 C =19962.756528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 H 0.086 0.914 4 C 0.129 3.871 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.128 3.872 19 N -0.721 5.721 20 C 0.574 3.426 21 O -0.517 6.517 22 C -0.068 4.068 23 C 0.005 3.995 24 O -0.300 6.300 25 C 0.014 3.986 26 C 0.018 3.982 27 O -0.285 6.285 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.398 0.602 40 H 0.178 0.822 41 H 0.083 0.917 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 8.612 33.930 35.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.135 4.135 3 H 0.104 0.896 4 C 0.004 3.996 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.199 1.199 18 C 0.005 3.995 19 N -0.377 5.377 20 C 0.361 3.639 21 O -0.393 6.393 22 C -0.117 4.117 23 C -0.061 4.061 24 O -0.212 6.212 25 C -0.062 4.062 26 C -0.058 4.058 27 O -0.199 6.199 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.234 0.766 40 H 0.195 0.805 41 H 0.101 0.899 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.077 5.994 33.734 34.636 hybrid contribution -1.653 2.851 -0.515 3.336 sum -6.730 8.845 33.218 35.028 Atomic orbital electron populations 1.21912 0.93931 1.03058 1.01983 1.21610 0.97172 1.00824 0.93857 0.89565 1.21160 1.00385 0.95433 0.82653 1.45961 1.59782 1.28116 1.05462 1.20309 0.78694 0.85501 0.83763 1.90714 1.38263 1.23830 1.86157 1.23528 1.04788 1.03443 0.98643 1.85421 1.72821 1.32929 0.92134 1.22829 1.41620 1.11287 0.92814 0.90982 1.24986 0.94831 0.95783 0.97915 1.70003 1.37388 1.24568 1.18289 0.86227 0.79174 0.80337 0.79774 1.19956 1.20799 1.19950 1.21368 1.00954 0.95400 0.81781 1.45772 1.58601 1.28046 1.05259 1.17086 0.80016 0.84853 0.81978 1.90893 1.38816 1.23305 1.86283 1.20374 1.05290 0.98572 0.87423 1.23116 0.97248 0.93289 0.92474 1.86104 1.81151 1.39126 1.14817 1.23768 0.98460 0.99154 0.84778 1.23703 0.97684 0.93814 0.90594 1.86437 1.83661 1.36854 1.12928 0.91745 0.92628 0.91729 0.91134 0.91059 0.76849 0.89243 0.89240 0.92107 0.90393 0.90352 0.76575 0.80540 0.89877 0.85870 0.85836 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.94 37.16 0.33 -0.50 16 2 C -0.12 -0.72 2.46 -90.62 -0.22 -0.95 16 3 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 4 C 0.13 1.31 5.06 -4.04 -0.02 1.29 16 5 N -0.74 -8.86 5.28 -60.29 -0.32 -9.18 16 6 C 0.53 9.54 7.85 -10.98 -0.09 9.45 16 7 O -0.52 -11.53 15.86 5.56 0.09 -11.44 16 8 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 10 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 11 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 14 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.13 0.94 5.06 -4.04 -0.02 0.92 16 19 N -0.72 -4.72 5.21 -61.71 -0.32 -5.04 16 20 C 0.57 5.78 7.73 -12.99 -0.10 5.68 16 21 O -0.52 -7.60 16.92 -10.06 -0.17 -7.77 16 22 C -0.07 -0.57 6.61 -37.81 -0.25 -0.82 16 23 C 0.01 0.03 10.58 29.23 0.31 0.34 16 24 O -0.30 -1.74 10.47 -30.83 -0.32 -2.06 16 25 C 0.01 0.05 7.30 37.45 0.27 0.32 16 26 C 0.02 0.08 7.31 37.45 0.27 0.36 16 27 O -0.29 -2.69 10.28 -45.74 -0.47 -3.16 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.21 7.18 -51.93 -0.37 -0.16 16 30 H 0.06 0.37 7.18 -51.93 -0.37 -0.01 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 3.53 7.65 -40.82 -0.31 3.21 16 34 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 35 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.40 1.36 5.49 -40.82 -0.22 1.13 16 40 H 0.18 0.43 6.08 -52.48 -0.32 0.11 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -39.60 386.15 -7.51 -47.11 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.22 Total: -1.76 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 0.91 Total: 0.43 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.09 Total: -39.54 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.87 Total: -24.43 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.60 -7.51 -47.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500057840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.077 kcal (2) G-P(sol) polarization free energy of solvation -39.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds