Wall clock time and date at job start Wed Apr 1 2020 01:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53004 * 109.46857 * 239.99875 * 2 1 3 5 5 N 1.46505 * 109.46638 * 64.99855 * 4 2 1 6 6 C 1.34783 * 119.99564 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99859 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99854 * 180.02562 * 6 5 4 9 9 S 1.81001 * 109.47083 * 180.02562 * 8 6 5 10 10 C 1.76199 * 99.99850 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00162 * 359.97438 * 10 9 8 12 12 C 1.38798 * 119.99956 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00171 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00090 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46991 * 60.00489 * 14 12 10 16 16 H 1.48500 * 109.47132 * 179.97438 * 14 12 10 17 17 H 1.48491 * 109.47284 * 300.00275 * 14 12 10 18 18 C 1.52996 * 109.47212 * 120.00567 * 2 1 3 19 19 N 1.46504 * 109.46681 * 294.99295 * 18 2 1 20 20 C 1.34777 * 119.99854 * 179.97438 * 19 18 2 21 21 O 1.21743 * 120.00050 * 0.02562 * 20 19 18 22 22 C 1.46377 * 120.00307 * 180.27510 * 20 19 18 23 23 C 1.33976 * 119.22871 * 359.46430 * 22 20 19 24 24 O 1.35002 * 121.69250 * 180.02562 * 23 22 20 25 25 C 1.43243 * 116.82955 * 343.35155 * 24 23 22 26 26 C 1.53559 * 108.08981 * 45.23306 * 25 24 23 27 27 O 1.36208 * 119.23645 * 179.72570 * 22 20 19 28 28 H 1.08998 * 109.47104 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46459 * 299.99928 * 1 2 3 30 30 H 1.08994 * 109.47070 * 59.99512 * 1 2 3 31 31 H 1.08999 * 109.47248 * 185.00089 * 4 2 1 32 32 H 1.08997 * 109.47454 * 305.00354 * 4 2 1 33 33 H 0.96994 * 120.00258 * 0.02562 * 5 4 2 34 34 H 1.08999 * 109.46982 * 300.00003 * 8 6 5 35 35 H 1.09003 * 109.47276 * 59.99466 * 8 6 5 36 36 H 0.96995 * 120.00337 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.47328 * 174.99628 * 18 2 1 38 38 H 1.08997 * 109.47540 * 54.99374 * 18 2 1 39 39 H 0.97000 * 120.00410 * 0.02562 * 19 18 2 40 40 H 1.08007 * 119.15637 * 0.36492 * 23 22 20 41 41 H 1.09003 * 109.74140 * 285.58758 * 25 24 23 42 42 H 1.08998 * 109.74305 * 164.88191 * 25 24 23 43 43 H 1.08999 * 109.75155 * 182.21528 * 26 25 24 44 44 H 1.08999 * 109.79258 * 61.50074 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6523 0.0354 -2.4424 6 6 1.9963 -0.4131 -3.6660 7 8 2.6263 -1.4432 -3.7793 8 6 1.5980 0.3655 -4.8933 9 16 2.2011 -0.4878 -6.3712 10 6 1.6116 0.6077 -7.6189 11 1 1.0589 1.4935 -7.3427 12 6 1.8575 0.3322 -8.9569 13 7 2.5306 -0.7476 -9.2937 14 14 1.2318 1.4932 -10.2799 15 1 1.8232 2.8401 -10.0764 16 1 1.6237 0.9780 -11.6163 17 1 -0.2480 1.5849 -10.1985 18 6 2.0401 -0.7214 1.2491 19 7 1.6526 0.0353 2.4423 20 6 1.9957 -0.4137 3.6659 21 8 2.6281 -1.4478 3.7796 22 6 1.6035 0.3391 4.8584 23 6 0.9128 1.4782 4.7152 24 8 0.5262 2.2119 5.7804 25 6 0.5528 1.5623 7.0568 26 6 1.8791 0.7976 7.1751 27 8 1.9537 -0.1319 6.0875 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.1263 -0.7996 -1.2057 32 1 1.6054 -1.7198 -1.2952 33 1 1.1488 0.8594 -2.3517 34 1 0.5117 0.4438 -4.9372 35 1 2.0326 1.3641 -4.8470 36 1 2.7021 -0.9403 -10.2287 37 1 3.1264 -0.7996 1.2055 38 1 1.6054 -1.7199 1.2951 39 1 1.1485 0.8591 2.3518 40 1 0.6540 1.8153 3.7222 41 1 -0.2820 0.8655 7.1327 42 1 0.4850 2.3066 7.8502 43 1 1.9109 0.2598 8.1227 44 1 2.7141 1.4960 7.1198 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500057840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:55 Heat of formation + Delta-G solvation = -162.456074 kcal Electronic energy + Delta-G solvation = -26292.904983 eV Core-core repulsion = 22143.528731 eV Total energy + Delta-G solvation = -4149.376252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.128 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.14040 -40.80140 -40.40804 -38.23276 -37.75480 -35.68905 -34.56746 -33.94297 -32.61060 -30.84852 -29.91338 -27.81907 -27.60420 -26.64225 -25.94539 -22.94229 -21.81115 -21.65851 -20.54150 -19.85676 -19.39276 -19.32981 -17.77304 -17.56847 -17.41222 -16.86810 -16.83791 -16.72354 -16.40659 -16.26379 -15.82310 -15.68553 -15.47940 -15.25706 -15.09650 -14.76954 -14.49464 -14.37320 -14.14297 -13.92061 -13.68259 -13.31952 -13.15257 -13.14878 -12.84706 -12.62389 -12.21338 -12.15517 -11.99553 -11.85426 -11.73449 -11.70562 -11.11102 -11.09773 -10.93828 -10.30307 -10.25097 -10.09248 -9.27260 -8.64924 -8.32632 -6.10929 0.21175 1.28067 1.45466 1.46159 1.52754 1.60743 1.64611 2.04352 2.22034 2.28228 2.32932 2.73772 3.01549 3.34347 3.37475 3.63598 3.75197 3.78028 3.84998 3.95331 3.97098 4.06473 4.25319 4.33349 4.41010 4.43846 4.51426 4.54288 4.62471 4.72648 4.80013 4.85013 4.89616 4.98631 5.13237 5.25599 5.39354 5.43328 5.47647 5.75153 6.16789 6.21321 6.49383 6.54514 7.08113 7.08554 7.28543 8.76290 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.033619 B = 0.001448 C = 0.001402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.670552 B =19326.616560 C =19962.756528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 H 0.113 0.887 4 C 0.125 3.875 5 N -0.707 5.707 6 C 0.532 3.468 7 O -0.568 6.568 8 C -0.128 4.128 9 S -0.156 6.156 10 C -0.547 4.547 11 H 0.085 0.915 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 0.998 3.002 15 H -0.262 1.262 16 H -0.281 1.281 17 H -0.261 1.261 18 C 0.130 3.870 19 N -0.700 5.700 20 C 0.571 3.429 21 O -0.579 6.579 22 C -0.106 4.106 23 C 0.042 3.958 24 O -0.306 6.306 25 C 0.012 3.988 26 C 0.011 3.989 27 O -0.324 6.324 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.418 0.582 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.271 0.729 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.416 0.584 40 H 0.211 0.789 41 H 0.087 0.913 42 H 0.155 0.845 43 H 0.143 0.857 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.006 12.403 35.181 38.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 H 0.131 0.869 4 C 0.001 3.999 5 N -0.362 5.362 6 C 0.318 3.682 7 O -0.447 6.447 8 C -0.280 4.280 9 S 0.071 5.929 10 C -0.695 4.695 11 H 0.103 0.897 12 C -0.191 4.191 13 N -0.549 5.549 14 Si 0.820 3.180 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.186 1.186 18 C 0.006 3.994 19 N -0.356 5.356 20 C 0.360 3.640 21 O -0.460 6.460 22 C -0.155 4.155 23 C -0.025 4.025 24 O -0.218 6.218 25 C -0.062 4.062 26 C -0.064 4.064 27 O -0.239 6.239 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.256 0.744 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.256 0.744 40 H 0.227 0.773 41 H 0.105 0.895 42 H 0.172 0.828 43 H 0.161 0.839 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.460 9.880 35.032 37.155 hybrid contribution -0.975 1.740 -0.698 2.113 sum -8.435 11.620 34.335 37.216 Atomic orbital electron populations 1.21953 0.92720 1.02803 1.03542 1.21436 0.97888 1.01203 0.90834 0.86935 1.21279 0.99916 0.95376 0.83367 1.45630 1.58112 1.28404 1.04026 1.20085 0.78455 0.84709 0.84974 1.90706 1.40949 1.26075 1.86954 1.23367 1.05824 1.03344 0.95434 1.85637 1.74358 1.35945 0.96984 1.23187 1.41546 1.11450 0.93277 0.89731 1.26130 0.94795 0.97536 1.00673 1.70181 1.38998 1.26843 1.18831 0.85005 0.79003 0.77968 0.76023 1.18611 1.20569 1.18592 1.21256 1.00245 0.95309 0.82596 1.45533 1.57766 1.28244 1.04009 1.17489 0.79090 0.84225 0.83213 1.90854 1.41900 1.26052 1.87164 1.20232 1.08333 1.00097 0.86789 1.23605 0.93937 0.91186 0.93808 1.86107 1.80430 1.39587 1.15668 1.24030 0.97776 0.99982 0.84454 1.23986 0.98451 0.93779 0.90193 1.86362 1.84523 1.39025 1.14030 0.93023 0.90068 0.91165 0.92229 0.92333 0.74396 0.87008 0.87010 0.92048 0.91663 0.91655 0.74390 0.77250 0.89465 0.82755 0.83893 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.94 71.98 0.64 -0.54 16 2 C -0.09 -0.95 2.46 -10.79 -0.03 -0.97 16 3 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 4 C 0.13 2.41 5.06 86.38 0.44 2.85 16 5 N -0.71 -15.45 5.28 -463.04 -2.45 -17.90 16 6 C 0.53 18.71 7.85 87.66 0.69 19.39 16 7 O -0.57 -26.06 15.86 -3.03 -0.05 -26.11 16 8 C -0.13 -4.86 6.16 71.24 0.44 -4.42 16 9 S -0.16 -8.60 20.57 -56.49 -1.16 -9.77 16 10 C -0.55 -30.83 9.50 67.95 0.65 -30.19 16 11 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 12 C 0.01 0.76 5.49 84.86 0.47 1.22 16 13 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 14 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 16 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 18 C 0.13 1.81 5.06 86.38 0.44 2.25 16 19 N -0.70 -8.00 5.21 -467.35 -2.44 -10.44 16 20 C 0.57 11.52 7.73 86.36 0.67 12.19 16 21 O -0.58 -18.10 16.92 10.06 0.17 -17.93 16 22 C -0.11 -1.72 6.61 23.42 0.15 -1.57 16 23 C 0.04 0.36 10.58 66.85 0.71 1.06 16 24 O -0.31 -2.59 10.47 -69.24 -0.72 -3.32 16 25 C 0.01 0.05 7.30 72.17 0.53 0.58 16 26 C 0.01 0.09 7.31 72.17 0.53 0.62 16 27 O -0.32 -6.19 10.28 -71.70 -0.74 -6.93 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.25 7.18 -2.39 -0.02 0.23 16 30 H 0.07 0.51 7.18 -2.39 -0.02 0.49 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.42 5.80 7.65 -92.71 -0.71 5.09 16 34 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 35 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.42 1.35 5.49 -92.71 -0.51 0.84 16 40 H 0.21 0.08 6.08 -2.91 -0.02 0.07 16 41 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.15 -0.33 8.14 -2.39 -0.02 -0.35 16 43 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -92.48 386.15 1.07 -91.42 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -0.18 Total: 9.09 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 6.31 Total: 2.47 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -4.60 Total: -84.00 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -1.34 Total: -54.28 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -92.48 1.07 -91.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500057840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.038 kcal (2) G-P(sol) polarization free energy of solvation -92.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds